ID:

dsi_3082

 Coordinate:

3r:4125323-4125472 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.6 -27.6 -27.3 -27.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTACTCGGTGTTTCAGTGCTGCTACCGTGAACACGGCGAGGAGTGCAAGGTGCGGGTGGTATGCGACCAGAAACGAGTCTTTCCTTACGAGGGCGAGCACGTGCACTTCATGCAGGCCAGCGACAAAAGCTGCCTGCCCTCTCAGTTCATGCCGGGCGAATCGGGAGTCATATCCTCGCTGTCGCCCAGTAAGGAGCTGCTGATCAAGAATACCACCAAGCTCGAGGAAGCCGACGACAAGGAGGAGGA
**************************************************************************.....((.......(((..((.....((((.(((....(((((.((((.......)))))))))......))).))))....))...)))))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 GSM343915
embryo
............TTCAGTGCTGCTACCGTGAGCACGGCGA.................................................................................................................................................................................................................. 28 1 1 2.00 2 0 0 2 0 0 0
..............................................................................................................................................................................................TAAGGAGCTGCTGATCAAGA........................................ 20 0 1 1.00 1 0 0 0 0 0 1
............................................................................................................................................TCTCAGTTCATGCCGGGCGAATCGGG.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................CCCTCTCAGTTCATGCCGGGC............................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0
..................................................................................................................................................TTCATGCCGGGCGAATCGGG.................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..........................................................................CGAGTCTTTCCTTACGAGGGCGAGCA...................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................CGACGACAAGGAGGA... 15 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TGAGGGCGAGCTGGTGCACTTC............................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................TAAGGAGCTGCTGATCAAGAA....................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................AGGGCGAGCACGTGCACTTCATGCA....................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................TCAAGAATACCACCAAGCTCGAGGAA.................... 26 0 1 1.00 1 0 0 0 0 1 0
.........................CCGTGAACTCGGCGA.................................................................................................................................................................................................................. 15 1 12 0.08 1 1 0 0 0 0 0
............................TGACCAAGGCGAGGAGT............................................................................................................................................................................................................. 17 2 13 0.08 1 0 1 0 0 0 0
ACTCCTCGGTGTTGCAG......................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

TGATGAGCCACAAAGTCACGACGATGGCACTTGTGCCGCTCCTCACGTTCCACGCCCACCATACGCTGGTCTTTGCTCAGAAAGGAATGCTCCCGCTCGTGCACGTGAAGTACGTCCGGTCGCTGTTTTCGACGGACGGGAGAGTCAAGTACGGCCCGCTTAGCCCTCAGTATAGGAGCGACAGCGGGTCATTCCTCGACGACTAGTTCTTATGGTGGTTCGAGCTCCTTCGGCTGCTGTTCCTCCTCCT
************************************************************************************.....((.......(((..((.....((((.(((....(((((.((((.......)))))))))......))).))))....))...)))))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................CATAGACCTCACTATAGGAGC....................................................................... 21 3 1 1.00 1 1 0 0
....................................................................................................GCACGTGAAGTACGTCCGGTCG................................................................................................................................ 22 0 1 1.00 1 1 0 0
......................................................................................................ACGTGAAGTACGGCCGG................................................................................................................................... 17 1 2 0.50 1 0 1 0
......................................................................................................................................................................................AGGGGGTGATTCCTCGA................................................... 17 2 9 0.11 1 0 0 1
.................ACGATGATGGTACTTGT........................................................................................................................................................................................................................ 17 2 14 0.07 1 0 1 0
.......................................................................................................................................................................................GGGGGTGATTCCTCGA................................................... 16 2 20 0.05 1 0 0 1

Generated: 04/23/2015 at 08:35 PM