ID:

dsi_3081

 Coordinate:

3r:16913960-16914144 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.7 -17.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. 2l:10920944-10920958 -
  2. 2l:11716990-11717004 +
  3. 2r:7653512-7653526 -
  4. 3l:11750891-11750905 -
  5. 3r:7545895-7545909 +
  6. dsi_3081  3r:16914121-16914135 -
  7. 3r:17134904-17134918 +
  8. node_44918:323-337 -
star

Sense Strand Reads

CCAGTTTGGAGCATCAAACTCAAGGCACAGGAACATTTGCCAGCACAGTGGTATGTTACTTTTAAAAAACACTTTTTAAACTCTAAGAAATCAGAAAATGATATCACTAAACTATATACGCTCAAAATATGTCTGGGTTGTATGTTTTTTGCAGCTCTATTAAATTATTTAATATTTTCACATTTCGTTCAAAATTATTACATTATAAGTCTATTAAATTTCTATATATTTTAAGGCTTTTTGAAACACTGTTGGCTTAAGAGAAGAGCTCAGAAATTTGTGATT
**************************************************((((((....((((((((....))))))))......((.((((.....)))).))........)))))).((.(((((((((..((((((((.......))))))))(((((((...)))))))....................((((......))))...............))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
....................................................................................................................................................................................CATTTCGTTCCAGACTATTAC.................................................................................... 21 3 4 0.75 3 3 0 0 0 0 0 0 0
..............................................................................................................................ATATGTCTAGGTTGTATCT............................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTGTTGACACACTGTTGGGT............................ 20 3 7 0.14 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................TTAAGAGAAGAGTTC.............. 15 1 7 0.14 1 0 0 0 1 0 0 0 0
.....................................................TGTTACTTTGAAAAAA........................................................................................................................................................................................................................ 16 1 15 0.13 2 0 0 1 0 1 0 0 0
...........................................................TTTTAAAAAACACTT................................................................................................................................................................................................................... 15 0 8 0.13 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................ACTGTTGGCTTGAGA....................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................TTGTGAGGCTTTTTGAAA....................................... 18 2 16 0.06 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................ACATTTCGTTCCAGACTATT...................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTCAAACCTCGTAGTTTGAGTTCCGTGTCCTTGTAAACGGTCGTGTCACCATACAATGAAAATTTTTTGTGAAAAATTTGAGATTCTTTAGTCTTTTACTATAGTGATTTGATATATGCGAGTTTTATACAGACCCAACATACAAAAAACGTCGAGATAATTTAATAAATTATAAAAGTGTAAAGCAAGTTTTAATAATGTAATATTCAGATAATTTAAAGATATATAAAATTCCGAAAAACTTTGTGACAACCGAATTCTCTTCTCGAGTCTTTAAACACTAA
**************************************************((((((....((((((((....))))))))......((.((((.....)))).))........)))))).((.(((((((((..((((((((.......))))))))(((((((...)))))))....................((((......))))...............))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 GSM343915
embryo
 O002
Head
 SRR902008
ovaries
 M024
male body		 M023
head
......................................................................................................................................................................................AAAGCAAGTTTTAATA....................................................................................... 16 0 2 284.50 569 426 31 32 43 19 0 17 0 0 0 1 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAATA....................................................................................... 15 0 2 147.50 295 192 43 35 3 19 0 3 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATAA...................................................................................... 17 0 2 73.50 147 97 18 11 10 4 0 7 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAATAA...................................................................................... 16 0 2 61.50 123 64 35 14 3 2 0 4 0 0 0 1 0 0
....................................................................................................................................................................................GTAAAGCAAGTTTTAATA....................................................................................... 18 0 1 19.00 19 1 0 0 0 0 10 0 7 0 1 0 0 0
........................................................................................................................................................................................AGCAAGTTTTAATAA...................................................................................... 15 0 2 13.00 26 17 5 3 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAAT........................................................................................ 15 0 2 10.50 21 10 4 5 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TGGAAAGCAAGTTTTAATA....................................................................................... 19 1 3 7.33 22 14 0 0 0 0 7 0 0 1 0 0 0 0
....................................................................................................................................................................................GAAAAGCAAGTTTTAATA....................................................................................... 18 1 2 3.00 6 1 0 0 0 0 5 0 0 0 0 0 0 0
...................................................................................................................................................................................GGTAAAGCAAGTTTTAATA....................................................................................... 19 1 2 2.50 5 2 0 0 0 0 2 0 0 1 0 0 0 0
..................................................................................................................................................................................GTGGAAAGCAAGTTTTAATA....................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATAAAGCAAGTTTTAATA....................................................................................... 18 1 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GTAAAGCAAGTTTTAATAA...................................................................................... 19 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0 0
..................................................................................................................................................................................GAGGAAAGCAAGTTTTAATA....................................................................................... 20 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GTAAAGCAAGTTTTCATA....................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAGCAAGTTTTAATAA...................................................................................... 18 1 6 1.00 6 0 1 3 0 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTGGAAAGCAAGTTTTAATAA...................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATGTGGAAAGCAAGTTTTAATA....................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGAAAGCAAGTTTTAAT........................................................................................ 18 1 3 1.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................ATGTAAAGCAAGTTTTAATA....................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGAAAGCAAGTTTTAATAA...................................................................................... 20 1 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GATAATTTCAAGATATACTAAAT.................................................... 23 3 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................................................AAAGAGGAAAGCAAGTTTTAATAA...................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAAAGCAAGTTTTAATAA...................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ACCGTGGAAAGCAAGTTTTAATA....................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTAGAGCAAGTTTTAATA....................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGAGGAAAGCAAGTTTTAATA....................................................................................... 21 3 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGAGCAAGTTTTAATA....................................................................................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATGGTGATTTGATATGGGCG.................................................................................................................................................................... 20 3 5 0.60 3 0 0 1 0 0 1 0 0 0 0 0 1 0
...............................................................................................................................................................................TAAGGGGAAAGCAAGTTTTAATA....................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCGGAAAGCAAGTTTTAATA....................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGAAAGCAAGTTTTAATACT..................................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATAATT.................................................................................... 19 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GTAAAGCAAGTTTTAATAAG..................................................................................... 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GAAAAGCAAGTTTTAATAA...................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGTAAAGCAAGTTTTAATAA...................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGCAAGTTTTAATA....................................................................................... 16 1 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGAAAGCAAGTTTTAAGA....................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GCAAAGCAAGTTTTAATAA...................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTGGAAAGCAAGTTTTAATA....................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGAAAGCAAGTTTGCATAAT..................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAGCAAGTTTTAATA....................................................................................... 17 1 9 0.33 3 0 0 2 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ACGAGAAAAGCAAGTTTTAATA....................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGTAAAGCAAGTTTTAATA....................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAGGTTTTAATA....................................................................................... 16 1 6 0.33 2 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATGTTGAAAGCAAGTTTTAATA....................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAGGTAAAGCAAGTTTTAATA....................................................................................... 22 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATAT...................................................................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGAAAGCAAGTTTTAATAGAGT................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATAG...................................................................................... 17 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CCTGGAAAGCAAGTTTTAATAA...................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCGTGGAAAGCAAGTTTTAATA....................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATTTTGGTTGAAAAATTTGAGA......................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGGTGGAAAGCAAGTTTTAATA....................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATAAC..................................................................................... 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTCAATAA...................................................................................... 17 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAAGA....................................................................................... 16 1 18 0.22 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTCCGTGCCCTTGTA......................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGAAAGCAAGTTTTAATA....................................................................................... 19 2 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGTAATGCAAGTTTTAATA....................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGACAAGCAAGTTTTAATA....................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAGTCGAAAGCAAGTTTTAATA....................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TCATTTCTCTTCTCGAGTCTT.......... 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTAATG....................................................................................... 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGGGGAAAGCAAGTTTTA.......................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAATG....................................................................................... 15 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAATAAA..................................................................................... 17 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTTGATA....................................................................................... 16 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTTGAAAGCAAGTTTTAATA....................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACAGCAAGTTTTAATA....................................................................................... 16 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAAGA....................................................................................... 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CTCTTCTTGAGTCTTGGAA...... 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCGAGTTTTAATA....................................................................................... 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAACAAGTTTTAATA....................................................................................... 16 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCATCAAGCAAGTTTTAATA....................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................GAAGAGCAAGTTTTAATA....................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAAGTTTCAATA....................................................................................... 16 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTAATCA...................................................................................... 16 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTACAGCAAGTTTTAATA....................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGTTGAAAGCAAGTTTTAATA....................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGAAAAGCAAGTTTTAATA....................................................................................... 19 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGTGGAAAGCAAGTTTTA.......................................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGAGAGCAAGTTTTGATA....................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGCAGGTTTTAATAA...................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................AAATTAATAATTTATAAAAGAGT....................................................................................................... 23 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CAGCAAGTTTTAATA....................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGCAAGTTTTACTAA...................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GCAAGTTTTAATAAA..................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAAAGCAAGTTTTAAT........................................................................................ 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAGCAAGTTTTAATA....................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAACAAGTTTTAATAA...................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................CGAGCAAGTTTTAATAA...................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTGAAGCAAGTTTTAATA....................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGCAATTTTTAATA....................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGCAAGTTTTAATA....................................................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTTGAAAGCAAGTTTTAATA....................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCAAAGCAAGTTTTAATA....................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GCGGTTCTTTAGGCTTTTAC......................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGCAAGTTTTAATAT...................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATGTCAAGCAAGTTTTCATA....................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:16913910-16914194 - dsi_3081 CCA--GTTT--------------GGAGCATCAA--AC-------TCAAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGTTACTTTTAAAAA----------------------------------------------------------------------------------------------A--------------------------CACTTTTTA-AACTCTAAGAAA-------TC-------------------------------------------AGAAAATGATATCACTAAACTATA------------TACGCTCAA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CTGGGTTGTATGT--TT--TTT---------------------------------------------GC---------------A-GCTCTATTAAATTATT--------TAATATTTT-------------CACATTTCGTT---------------------------------CA--AAATTA---------------------------------------------------------------------------------------------------TT---ACATT------------------------------------------------ATAAGTCTAT-T---------AAATTTCTATATATTT-TAAGG------CT-TTTTGAAACACTGTTG-------------GCTTAA-------GAGAAGAGCTCAGAAA-TTTGTGATT
droSec2 scaffold_0:17775705-17775995 - CCA--GTTT--------------GGAGCATCAA--AC-------TCAAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGCTATTTCTGAAAA----------------------------------------------------------------------------------------------A--------------------------CACTTTTTA-AACTCTAAGA-ATAAGAAATC-------------------------------------------AGAAAATGATATCACTAAACTATA------------TACGCTTAA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CCGGGTTGTATGT--TT--TTT---------------------------------------------GG---------------A-GCTCTATTAAAACATT--------TAATATTTT-------------CACATTTTGTT---------------------------------CA--AAATGA---------------------------------------------------------------------------------------------------TT---ACATT------------------------------------------------ATTAGTCTAT-T---------AAATTTCTATATATTT-TAAGG------CT-TTTTGAAACACTGTTG-------------GCTTAA-------GAAAAGAGCTCAAAAA-TTTGTGATT
dm3 chr3R:4054396-4054684 + CCA--GTTT--------------GGAGAATCAA--AC-------TCGAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGCTACTTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAACTTTTTATAAGTCTAAGAAA-------TC-------------------------------------------TTTAAAATATAT-----------------GTATACATAAGCTCCA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CTGGGTTGTATGT--TT--TTT---------------------------------------------GG---------------A-ACTCCATTAAATCATA--------TAACACTTT-------------AACATTTTTTT---------------------------------TT--AAATTA---------------------------------------------------------------------------------------------------TT---TCATT------------------------------------------------ATAAGTCTTT-T---------CAATTTCTATACATTT-TAAGG------CT-TTTGGAAACACTGTTG-------------GCTTAG-------GAGAAGAGCTCAGAAA-TTTGTGATT
droEre2 scaffold_4770:17522252-17522501 - CCA--GTTT--------------GGAGCTGGAA--TC-------TGAAGGCACAGGAACA-TTTGCCA-GCACAGTGGCATGCTACTTTTGAAAAA---------------------------------------------------------------------------------------------A--------------------------CACTTTTAC-CAGTCTAGGAAATAAGAAA--------------------------------------------------TT-TAATTACAAAGCTATG------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-----CAT-C--TT--TTT---------------------------------------------GG---------------A-ACTGTATTAAAACTTAAATG--------GCTGG-------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------TT---AAATG------------------------------------------------ACAAGTCTAT-T---------ATAATTGTATATGTTT-TAAGG------CT-ATATGAAACACTGTTG-------------GCTCAA-------GAGAAGAGCTCTGAAA-TTTGTGATT
droYak3 3R:8129180-8129469 + CCA--GTTT--------------GGAGCTCGGA--AC-------TCCAGGCACAGGAACA-TTTGCCA-GCACAGTGGCTTGCTACTTATGAGGAA---------------------------------------------------------------------------------------------A--------------------------CACTCTTGACTGGTCTAGGAAA-------TC-------------------------------------------AGAAAAGCTTAT-----------------AAA----TACTTTCTA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--------------------GTGGGATGCATGT--TT--TTT---------------------------------------------GG---------------AAACTATATCAAATCTTCGGTGTGCGTAACATGTT--------TAAGACACTTTTTGTAAAC----------------------------------AAAGGA---------------------------------------------------------------------------------------------------TT---ATATT------------------------------------------------ATAGATCTAT-T---------A---TTATATATACTT-TAAGG------CT-TTAGGAAACACTGTTG-------------GCTTAA-------GGGAAGAGCTCTGAAA-TTGGTGATA
droEug1 scf7180000409490:667223-667528 - CCAGAGCTT--------------GGAGCTCGAAAAGCTCAAGACTCGAGTCTTAGGACCA-TGTGCTAGCTACAGTGGCATGAGATCTTTCGAGAAA------------------------------------------TTTGA---------------TTTAAAATAATTAATATT-------------------------------------------------------------------------------------------------------------------------------------TATA------------TAAGCTTAAAATTAAAAAGTTGTTGAAATTGAGACC------------------------------------------TTAGGACTG--------------------------ACAC-TTTCCTTTAATATATATTATAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAATT-------GTGAAC----CTAAAAA---------------------------------C----------TTCTAAGCTGGGCTTTTCCAGGACTT------------------------------------------------ACAAAGTTC--------------AACTTT--AGTTTT-TGATC------AT-CCAACAAACACTGTTT-------------CCTTTT-------GAGAAGAACTCAGAAA-TTTGTGATT
droBia1 scf7180000302402:6738212-6738554 + CCA--GTTT--------------GCAGCTCGAA--AC-------TTAAGACTGAAAGCTCTAAAACAAGCCACAGTGGCAGAAGATCTTAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAATATTTAAAAAGA------------AACATTAAT-------AAAACGTTTAAATTGTAATTTTTTGGA----GATATC-------------------------T-TGCTTGGATACTTGCTTTAATATTTCCTTG-----------------ATATATAACTTAAGAAAACATACATTTATTTATTTATGT------------------------------------------------------TT--TA--TTT---------------------------------------------ATTATATTTTAATTAGTA-TATATTTGAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCCTTTTTTCTAAATTTTAGTTTAGC-----------------------------------AAG-----------------------------------ACAGAGTGTTTATATCTTT-TGAGA------TT-CCAGCGAGCACTGTTG-------------GTTTTT-------GGGAAGAGCTCAGAAA-TTTCTGATT
droTak1 scf7180000415711:1785020-1785403 + CCA--GTTT--------------GGAGCTCGAA--AT-------TGAAGACTCAAGCCTC-TGAGCCCGCTACAGTGGCATGATATATTTGAAAATGTTTAAAAAAATAATATGGCTTATGAAAATTCAAATAAGG---TTATAAA-------------------------------------------------------------------------------------------------------------------------------------------CATTT-----------------------------------------------------------------------CATTTAATCGGAA---ATTTATGTTT---------TT-AAAA---------AATAAGTGCTTTAAC--TTATTAAATTACGC-TTTCTTTATA--AA-----------------------------------------------------CTGAAAAAATTTTAATAAATTAAACAAAAATAT--T--------------------------------------------------------------------------ATTTTACAAAAAATTA--------TTTTTATTG-------------TAAAATTATTT---------------------------------T---------ACAAAACAATTAGTTTTTGTCCGGGAAAAGCTATAGAAAAATG----------------------T-------------------------TTAACTTTTGGAAC-----------------------------------------------------------------------------ACTTACATTTTT-TGAGA------TT-CCAGCA----TTGAGAT--------TTTGAGATTG-------AAGA----AACAGAAC-TTAGTGATT
droEle1 scf7180000491212:1788114-1788234 - TTT--AATT--------------TTTGTTCAAT--AT-------TT-CTGTTGGCCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---GACTT------------------------------------------------ATAAGCTCCA------------TAATTTTATATATCT-TGAGC------TT-CCAGCAAACACTGTGAT------------TTGTTT-------AAGGAGAGCTCTGAAATTTTGTGATT
droRho1 scf7180000779995:1666-1849 + CGA--GCTC--------------AAAAACTGAG--AC-------TCAAGAC-------CA-AGTTTCAAGTACAGTGGCTTGAGATCTTAAAAAA----------------------------------------------------------------------------------------------A---------------------------------------------------------AAAACCAACACAAAAAACGAATGCCTTTAAAATACTCTGAACCAATATTTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---GTAT-------------------------------------------------TCCAGGCGAT-C---------CAACTATTCTATATTTTTAAGG------TT-TTTATAATTTATACTA-------------ATTTA----------------------------------
droFic1 scf7180000454106:528677-528905 - CTC--A------------------GATCTCAAG--AC-------TCGAGACTTACCACTCGCTAACCAGGAACAGTGGCTAAAGGTATTTCAGAAA---------------------------------------------------------------------------------------------ATAAAATGATTAAATA---------------------------AATAAATAAATAA----------------------------------------------TATATAAATATAATATAATTATACTTAT--------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------------------------AAACATATT--------TAAGAAACCCAT--TAGATTTAGTATTGTATACTAGATTTAATTTTGTTAAATAAATAA---------------------------------------------------------------------------------------------------AT---AATAT------------------------------------------------TTAAATATAT-T---------TAATTTTT-----------------------GTTT-------------------------------------------------------------GAA
droKik1 scf7180000302313:486354-486641 - GTG--TCTCTCTGCAGGCGACT-GCAGCCTCAA--AC-------TCAAGGCATTTCAG-----GCTTTGGTACAGTGGATTAACATTTATTTAAAA---------------------------------------------------------------------------------------------TTAGATTCCTTATACTAAATTCTAAA------------------------------TC-------------------------------------------ATAGTTTGCTACTACAAAATTATTTTTAT--------------AA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--------------------ACA-----TAA------------------------------------------------------------------------------------------------------------------------------TTCT-T---------------------------------T---------AGCAAACAACTAATT-------ATGAAAGAATCAAAACACATG----------------------G-------------------------TCA---------------ACTTTTTCTATTAATT-------CTTTTATAATAAA-------------------------------------TTTAACACAATT-TAAAG------CTTCCATAAATCACTGTT-------------------A-------AAGAAGTGCTCAGAAACGTTTTGATT
droAna3 scaffold_13340:21512751-21513104 + CGA--ATTT--------------G-TGCTCAAG--AT-------TC-AGACTGAAAGCCA-TGGGCCAGGAACAGTGGTTTTGTGGTCTTCAAAAT---------------------------------------------------------------------------------------------A---------------------------------------------------------GGGGGTTATTTTATAAATAAATGTTCAT-------CTCCATAT-----------------------------------------------------------------------CATATATT----AGTTAGTTAGGTATTATATAAAAATTAAAAAATAATTTTACTAACTACTTTAACAGTTTTTTAATTACTT------------------------------------------------------TTATTTGAAAGAATATGT--------------------CTAATATATATTT--TT--TTT---------------------------------------------ATAATA-------AAGTA-TCTCTATGAAATATTG--------TTTCATTTG-------------TAAACTTATTT---------------------------------TA--AAAT--------------------------------------------------------------------------------------------------------------------------------------CTTAAAAA-----------------------------------ACAAAAATTATAAGCTTTT-TAATA------TC-CTCAAAAACACTGTCAT------------AGTCCC-------CTGTTGTTTTTTAAAA-TGTATGATT
droBip1 scf7180000396413:1026051-1026430 - CTC--TCCA------GGCGAATTTCTGTTCAAG--AT-------TC-TGACTGGAAACCA-TGAGCCAAGAACAGTGGTTTAGGGTCTTTTAAAT----------------------------------------------------------------------------------------------A---------------------------------------------------------GGGAATTATTTTACCAATAAATATGTATAAAAAATTATGAAAT-----------------------------------------------------------------------TTTATAAA----AATGGATCAGATATTATATATCATTAACGATATAGTTTTATTAACTTCCTTAATA----------------------------AAG------GGACATCATATATGTATGTAAGTATGTAGTTAGTACTAGAGAAGATCTAC--------------------TTATTAAAAATCTTT--CTTAAGTCCCAAAAAT-ATATATAAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------CT---TTCCT------------------------------------------------ACAAGTTTCGAAATCTTTA-TCAAATTTTA-AGCTTT-TAATA------TC-CTCAAAAACACTGTTAC------------AGTCCC-------CTGTAGTTTTCCAAAA-TGTATGATT
dp5 2:13014591-13014912 - CTC--TTCA------GGCC------AGACTCCG--AC-------TCC--------------AGACCCAAGCACAGTGTCTGGAGATCGTTCGGAAA-------------------------------------------GTATA---------------GCCAGAATAAACAAGATGATCAATTCAATAAGAGGCTGCTTATGTGGAGTAGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------TTT--CTTCTGCTTCAGAGAT-ATGGATATGGTCAGTCG-----ATACTGATTGCATGAAG-------ACGT----------------------------------G-------------GACATTTTGGG---------------------------------GA-------------------------------------AGTCAAG----------------------------------------------------------------G---GTACTACAATTTCTGGGAACT-------CTGCCAAAATGAA-------------------------------------T--TACATATTT-CAATATTCTGCTC-TCACAGAACACTGTCCAAAGTTTGGGTTGAGGCTG-------AAGAAGTGCCCACAAA-TTTCTGATT
droPer2 scaffold_0:7440533-7440855 + CTC--TTCA------GG------------CCAT--AC-------TC-CGACTGGGACTCT-AGACCTAAGCACAGTGTCTGCAGATCGTTCGGAAA-------------------------------------------GTATA---------------GCCAGAATAAACAAGATGATCAATTCAATAAGAGGCTGCTTATGTGGAGTAGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------TTT--CTTCTGCTTCACAGAT-ATGGATATGGACAGTCG-----ATACTGA-----------------------------------------------------TTG-------------GACATTTTGTA---------------------------------GA-------------------------------------AGTCAAG----------------------------------------------------------------G---GTACTACAATTTCTCGAAACTCATTTCTCTGCCAAAATGAA---------------------------------------TTACATATTT-TAAGATACTACTA-TCACAGAACACTGTACAAAGTTTGGGTTGAGGCTG-------AAGAAGTGCCCACAAA-TTTCTGATT
droWil2 scf2_1100000004943:14177181-14177590 + TAG--TCTT--------------CAGGCTCAAC--AC-------AAATGGAGATGGGAAA-CACCAAT-GCACAGTGATACGAAATAGATTAAATGATAGAAAATAGAAATG---------------------AGGAAAGTATAAATATTTATATTCAACCTAGAGTAAAAGAAATAGTAAATTTACCAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATAAATCATTA-------------------------------------------------------AAAAGTGA--------------------CAAAAATATATTT----CATTTACATAAAAAATTATAAAGAATTTTACACATTTTTCCATTAATTATAT-------------------------------------------------GTAAACTTTTAAGGATCTTTTTGTT---------------------------------AC-------------------AATT-------GAA----AATCCAAGAAAATGTTATCATTAGTTTCGAAAATTGTTAAAATA----------TTTCTTGTT--------------------------------------------------GAATTTTACTGAATTTAAGGATCA--------------AAGCTT--AGA------------------CTTCGTTCCACTGTGC-------------CCTTAAGTAGGGAGAGAAATGCATACAAA-TTTATGACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCA--GTTT--------------GGAGCATCAA--AC-------TCAAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGTTACTTTTAAAAA----------------------------------------------------------------------------------------------A--------------------------CACTTTTTA-AACTCTAAGAAA-------TC-------------------------------------------AGAAAATGATATCACTAAACTATA------------TACGCTCAA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CTGGGTTGTATGT--TT--TTT---------------------------------------------GC---------------A-GCTCTATTAAATTATT--------TAATATTTT-------------CACATTTCGTT---------------------------------CA--AAATTA---------------------------------------------------------------------------------------------------TT---ACATT------------------------------------------------ATAAGTCTAT-T---------AAATTTCTATATATTT-TAAGG------CT-TTTTGAAACACTGTTG-------------GCTTAA-------GAGAAGAGCTCAGAAA-TTTGTGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................TTTTAAAAA----------------------------------------------------------------------------------------------A--------------------------CACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000010000000000
droSec2
CCA--GTTT--------------GGAGCATCAA--AC-------TCAAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGCTATTTCTGAAAA----------------------------------------------------------------------------------------------A--------------------------CACTTTTTA-AACTCTAAGA-ATAAGAAATC-------------------------------------------AGAAAATGATATCACTAAACTATA------------TACGCTTAA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CCGGGTTGTATGT--TT--TTT---------------------------------------------GG---------------A-GCTCTATTAAAACATT--------TAATATTTT-------------CACATTTTGTT---------------------------------CA--AAATGA---------------------------------------------------------------------------------------------------TT---ACATT------------------------------------------------ATTAGTCTAT-T---------AAATTTCTATATATTT-TAAGG------CT-TTTTGAAACACTGTTG-------------GCTTAA-------GAAAAGAGCTCAAAAA-TTTGTGATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCA--GTTT--------------GGAGAATCAA--AC-------TCGAGGCACAGGAACA-TTTGCCA-GCACAGTGGTATGCTACTTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAACTTTTTATAAGTCTAAGAAA-------TC-------------------------------------------TTTAAAATATAT-----------------GTATACATAAGCTCCA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGT--------------------CTGGGTTGTATGT--TT--TTT---------------------------------------------GG---------------A-ACTCCATTAAATCATA--------TAACACTTT-------------AACATTTTTTT---------------------------------TT--AAATTA---------------------------------------------------------------------------------------------------TT---TCATT------------------------------------------------ATAAGTCTTT-T---------CAATTTCTATACATTT-TAAGG------CT-TTTGGAAACACTGTTG-------------GCTTAG-------GAGAAGAGCTCAGAAA-TTTGTGATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................ACTTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CTTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ACTTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAACTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................AAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AA----------------------------------------------------------------------------------------------------------------AAAAAAAAAACTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGAAAAA----------------------------------------------------------------------------------------------------------------AAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCA--GTTT--------------GGAGCTGGAA--TC-------TGAAGGCACAGGAACA-TTTGCCA-GCACAGTGGCATGCTACTTTTGAAAAA---------------------------------------------------------------------------------------------A--------------------------CACTTTTAC-CAGTCTAGGAAATAAGAAA--------------------------------------------------TT-TAATTACAAAGCTATG------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-----CAT-C--TT--TTT---------------------------------------------GG---------------A-ACTGTATTAAAACTTAAATG--------GCTGG-------------AATAT----------------------------------------------------------------------------------------------------------------------------------------------------TT---AAATG------------------------------------------------ACAAGTCTAT-T---------ATAATTGTATATGTTT-TAAGG------CT-ATATGAAACACTGTTG-------------GCTCAA-------GAGAAGAGCTCTGAAA-TTTGTGATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CCA--GTTT--------------GGAGCTCGGA--AC-------TCCAGGCACAGGAACA-TTTGCCA-GCACAGTGGCTTGCTACTTATGAGGAA---------------------------------------------------------------------------------------------A--------------------------CACTCTTGACTGGTCTAGGAAA-------TC-------------------------------------------AGAAAAGCTTAT-----------------AAA----TACTTTCTA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--------------------GTGGGATGCATGT--TT--TTT---------------------------------------------GG---------------AAACTATATCAAATCTTCGGTGTGCGTAACATGTT--------TAAGACACTTTTTGTAAAC----------------------------------AAAGGA---------------------------------------------------------------------------------------------------TT---ATATT------------------------------------------------ATAGATCTAT-T---------A---TTATATATACTT-TAAGG------CT-TTAGGAAACACTGTTG-------------GCTTAA-------GGGAAGAGCTCTGAAA-TTGGTGATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CCAGAGCTT--------------GGAGCTCGAAAAGCTCAAGACTCGAGTCTTAGGACCA-TGTGCTAGCTACAGTGGCATGAGATCTTTCGAGAAA------------------------------------------TTTGA---------------TTTAAAATAATTAATATT-------------------------------------------------------------------------------------------------------------------------------------TATA------------TAAGCTTAAAATTAAAAAGTTGTTGAAATTGAGACC------------------------------------------TTAGGACTG--------------------------ACAC-TTTCCTTTAATATATATTATAGTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAATT-------GTGAAC----CTAAAAA---------------------------------C----------TTCTAAGCTGGGCTTTTCCAGGACTT------------------------------------------------ACAAAGTTC--------------AACTTT--AGTTTT-TGATC------AT-CCAACAAACACTGTTT-------------CCTTTT-------GAGAAGAACTCAGAAA-TTTGTGATTSizeHit CountTotal NormTotal
No Reads
droBia1
CCA--GTTT--------------GCAGCTCGAA--AC-------TTAAGACTGAAAGCTCTAAAACAAGCCACAGTGGCAGAAGATCTTAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAATATTTAAAAAGA------------AACATTAAT-------AAAACGTTTAAATTGTAATTTTTTGGA----GATATC-------------------------T-TGCTTGGATACTTGCTTTAATATTTCCTTG-----------------ATATATAACTTAAGAAAACATACATTTATTTATTTATGT------------------------------------------------------TT--TA--TTT---------------------------------------------ATTATATTTTAATTAGTA-TATATTTGAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCCTTTTTTCTAAATTTTAGTTTAGC-----------------------------------AAG-----------------------------------ACAGAGTGTTTATATCTTT-TGAGA------TT-CCAGCGAGCACTGTTG-------------GTTTTT-------GGGAAGAGCTCAGAAA-TTTCTGATTSizeHit CountTotal NormTotal
No Reads
droTak1
CCA--GTTT--------------GGAGCTCGAA--AT-------TGAAGACTCAAGCCTC-TGAGCCCGCTACAGTGGCATGATATATTTGAAAATGTTTAAAAAAATAATATGGCTTATGAAAATTCAAATAAGG---TTATAAA-------------------------------------------------------------------------------------------------------------------------------------------CATTT-----------------------------------------------------------------------CATTTAATCGGAA---ATTTATGTTT---------TT-AAAA---------AATAAGTGCTTTAAC--TTATTAAATTACGC-TTTCTTTATA--AA-----------------------------------------------------CTGAAAAAATTTTAATAAATTAAACAAAAATAT--T--------------------------------------------------------------------------ATTTTACAAAAAATTA--------TTTTTATTG-------------TAAAATTATTT---------------------------------T---------ACAAAACAATTAGTTTTTGTCCGGGAAAAGCTATAGAAAAATG----------------------T-------------------------TTAACTTTTGGAAC-----------------------------------------------------------------------------ACTTACATTTTT-TGAGA------TT-CCAGCA----TTGAGAT--------TTTGAGATTG-------AAGA----AACAGAAC-TTAGTGATTSizeHit CountTotal NormTotal
No Reads
droEle1
TTT--AATT--------------TTTGTTCAAT--AT-------TT-CTGTTGGCCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---GACTT------------------------------------------------ATAAGCTCCA------------TAATTTTATATATCT-TGAGC------TT-CCAGCAAACACTGTGAT------------TTGTTT-------AAGGAGAGCTCTGAAATTTTGTGATTSizeHit CountTotal NormTotal
No Reads
droRho1
CGA--GCTC--------------AAAAACTGAG--AC-------TCAAGAC-------CA-AGTTTCAAGTACAGTGGCTTGAGATCTTAAAAAA----------------------------------------------------------------------------------------------A---------------------------------------------------------AAAACCAACACAAAAAACGAATGCCTTTAAAATACTCTGAACCAATATTTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---GTAT-------------------------------------------------TCCAGGCGAT-C---------CAACTATTCTATATTTTTAAGG------TT-TTTATAATTTATACTA-------------ATTTA----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTC--A------------------GATCTCAAG--AC-------TCGAGACTTACCACTCGCTAACCAGGAACAGTGGCTAAAGGTATTTCAGAAA---------------------------------------------------------------------------------------------ATAAAATGATTAAATA---------------------------AATAAATAAATAA----------------------------------------------TATATAAATATAATATAATTATACTTAT--------AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------------------------AAACATATT--------TAAGAAACCCAT--TAGATTTAGTATTGTATACTAGATTTAATTTTGTTAAATAAATAA---------------------------------------------------------------------------------------------------AT---AATAT------------------------------------------------TTAAATATAT-T---------TAATTTTT-----------------------GTTT-------------------------------------------------------------GAASizeHit CountTotal NormTotal
No Reads
droKik1
GTG--TCTCTCTGCAGGCGACT-GCAGCCTCAA--AC-------TCAAGGCATTTCAG-----GCTTTGGTACAGTGGATTAACATTTATTTAAAA---------------------------------------------------------------------------------------------TTAGATTCCTTATACTAAATTCTAAA------------------------------TC-------------------------------------------ATAGTTTGCTACTACAAAATTATTTTTAT--------------AA-------AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT--------------------ACA-----TAA------------------------------------------------------------------------------------------------------------------------------TTCT-T---------------------------------T---------AGCAAACAACTAATT-------ATGAAAGAATCAAAACACATG----------------------G-------------------------TCA---------------ACTTTTTCTATTAATT-------CTTTTATAATAAA-------------------------------------TTTAACACAATT-TAAAG------CTTCCATAAATCACTGTT-------------------A-------AAGAAGTGCTCAGAAACGTTTTGATTSizeHit CountTotal NormTotal
No Reads
droAna3
CGA--ATTT--------------G-TGCTCAAG--AT-------TC-AGACTGAAAGCCA-TGGGCCAGGAACAGTGGTTTTGTGGTCTTCAAAAT---------------------------------------------------------------------------------------------A---------------------------------------------------------GGGGGTTATTTTATAAATAAATGTTCAT-------CTCCATAT-----------------------------------------------------------------------CATATATT----AGTTAGTTAGGTATTATATAAAAATTAAAAAATAATTTTACTAACTACTTTAACAGTTTTTTAATTACTT------------------------------------------------------TTATTTGAAAGAATATGT--------------------CTAATATATATTT--TT--TTT---------------------------------------------ATAATA-------AAGTA-TCTCTATGAAATATTG--------TTTCATTTG-------------TAAACTTATTT---------------------------------TA--AAAT--------------------------------------------------------------------------------------------------------------------------------------CTTAAAAA-----------------------------------ACAAAAATTATAAGCTTTT-TAATA------TC-CTCAAAAACACTGTCAT------------AGTCCC-------CTGTTGTTTTTTAAAA-TGTATGATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTC--TCCA------GGCGAATTTCTGTTCAAG--AT-------TC-TGACTGGAAACCA-TGAGCCAAGAACAGTGGTTTAGGGTCTTTTAAAT----------------------------------------------------------------------------------------------A---------------------------------------------------------GGGAATTATTTTACCAATAAATATGTATAAAAAATTATGAAAT-----------------------------------------------------------------------TTTATAAA----AATGGATCAGATATTATATATCATTAACGATATAGTTTTATTAACTTCCTTAATA----------------------------AAG------GGACATCATATATGTATGTAAGTATGTAGTTAGTACTAGAGAAGATCTAC--------------------TTATTAAAAATCTTT--CTTAAGTCCCAAAAAT-ATATATAAAAAAAG----------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------CT---TTCCT------------------------------------------------ACAAGTTTCGAAATCTTTA-TCAAATTTTA-AGCTTT-TAATA------TC-CTCAAAAACACTGTTAC------------AGTCCC-------CTGTAGTTTTCCAAAA-TGTATGATTSizeHit CountTotal NormTotal
No Reads
dp5
CTC--TTCA------GGCC------AGACTCCG--AC-------TCC--------------AGACCCAAGCACAGTGTCTGGAGATCGTTCGGAAA-------------------------------------------GTATA---------------GCCAGAATAAACAAGATGATCAATTCAATAAGAGGCTGCTTATGTGGAGTAGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------TTT--CTTCTGCTTCAGAGAT-ATGGATATGGTCAGTCG-----ATACTGATTGCATGAAG-------ACGT----------------------------------G-------------GACATTTTGGG---------------------------------GA-------------------------------------AGTCAAG----------------------------------------------------------------G---GTACTACAATTTCTGGGAACT-------CTGCCAAAATGAA-------------------------------------T--TACATATTT-CAATATTCTGCTC-TCACAGAACACTGTCCAAAGTTTGGGTTGAGGCTG-------AAGAAGTGCCCACAAA-TTTCTGATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTC--TTCA------GG------------CCAT--AC-------TC-CGACTGGGACTCT-AGACCTAAGCACAGTGTCTGCAGATCGTTCGGAAA-------------------------------------------GTATA---------------GCCAGAATAAACAAGATGATCAATTCAATAAGAGGCTGCTTATGTGGAGTAGAATATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG---------TTT--CTTCTGCTTCACAGAT-ATGGATATGGACAGTCG-----ATACTGA-----------------------------------------------------TTG-------------GACATTTTGTA---------------------------------GA-------------------------------------AGTCAAG----------------------------------------------------------------G---GTACTACAATTTCTCGAAACTCATTTCTCTGCCAAAATGAA---------------------------------------TTACATATTT-TAAGATACTACTA-TCACAGAACACTGTACAAAGTTTGGGTTGAGGCTG-------AAGAAGTGCCCACAAA-TTTCTGATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAG--TCTT--------------CAGGCTCAAC--AC-------AAATGGAGATGGGAAA-CACCAAT-GCACAGTGATACGAAATAGATTAAATGATAGAAAATAGAAATG---------------------AGGAAAGTATAAATATTTATATTCAACCTAGAGTAAAAGAAATAGTAAATTTACCAAGTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAATAAATCATTA-------------------------------------------------------AAAAGTGA--------------------CAAAAATATATTT----CATTTACATAAAAAATTATAAAGAATTTTACACATTTTTCCATTAATTATAT-------------------------------------------------GTAAACTTTTAAGGATCTTTTTGTT---------------------------------AC-------------------AATT-------GAA----AATCCAAGAAAATGTTATCATTAGTTTCGAAAATTGTTAAAATA----------TTTCTTGTT--------------------------------------------------GAATTTTACTGAATTTAAGGATCA--------------AAGCTT--AGA------------------CTTCGTTCCACTGTGC-------------CCTTAAGTAGGGAGAGAAATGCATACAAA-TTTATGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 09:56 AM