ID:

dsi_30799

 Coordinate:

3r:10871724-10871783 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.5 -16.5 -16.5 -15.9

Flybase annnotation

CDS [3r_10871553_10871723_-]; exon [3r_10871494_10871723_-]; CDS [3r_10871784_10872068_-]; exon [3r_10871784_10872068_-]; intron [3r_10871724_10871783_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
TTGCAGCCATTAAGATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGGTCGGTATTCCGAAAAGTTTGAGGTATAACTCCGACTTAAGTTTATGCCTCGTTTCTTAGCAAATGTGTGAGATGCTCATCAGCATTGCCCGGACCTGTGGCATCAAAGT
**************************************************.......((..((((....((((((((((((........)))).))))))))))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
................................................................AAGTTTGAGGTATAACTCCGA........................................................................... 21 0 1 8.00 8 6 1 0 0 0 1 0 0
.................................................................AGTTTGAGGTATAACTCCGA........................................................................... 20 0 1 2.00 2 1 0 0 1 0 0 0 0
.................................................................AGTTTGAGGTATAACTCCGG........................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................TCCGAAAAGTTTGAGGTATAACTCCGA........................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0
...................................................................CTTGAGGTATAACTCCGA........................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0
.........TTAAGATTCAGGACCCGC..................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..GCAGCCATTAAGATTCAGGAC......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
...................................................................................................................................AGCATTGCCCAGACCTGCGGCA....... 22 2 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................AAAGTTTGAGGTATAACTCCGAC.......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................TCAGCATTGCCCGGACCTGTGGCATC..... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
........ATTGAGATTCGGGACCCGCCC................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................TCCGAAAAGTTTGAGGTATAACTCCGG........................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................TCATCAGCATTGCCCGGACCTGTGGCATC..... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................AAGTTTGAGGTATAACTCCTC........................................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................................................................................TGCCCGGACCTGTCGCACC..... 19 2 2 0.50 1 0 0 0 0 0 0 0 1
........GTTAAGATTCCGGAACCGC..................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0
........GTTAAGATTCCGGACCCT...................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AACGTCGGTAATTCTAAGTCCTGGGCGGGTTACATGAAGAATGGTACGTCCAGCCATAAGGCTTTTCAAACTCCATATTGAGGCTGAATTCAAATACGGAGCAAAGAATCGTTTACACACTCTACGAGTAGTCGTAACGGGCCTGGACACCGTAGTTTCA
**************************************************.......((..((((....((((((((((((........)))).))))))))))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...................TTTGGGCGGGTTACATGAAGA........................................................................................................................ 21 2 1 1.00 1 1 0 0
.......................TGCGGGTTACATGAAGAATGGT................................................................................................................... 22 1 1 1.00 1 1 0 0
...........................................GTAGGTCCAGCCATA...................................................................................................... 15 1 4 0.25 1 0 1 0
......GGGAATTCTAAGTCCAG......................................................................................................................................... 17 2 7 0.14 1 0 0 1
...........................................................................................................................................GGCCTGGACTGCGTAG..... 16 2 20 0.05 1 0 1 0

Generated: 04/24/2015 at 10:51 AM