ID:

dsi_30778

 Coordinate:

3r:11324682-11324895 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.7 -5.7 -5.7

Flybase annnotation

CDS [3r_11324880_11324992_-]; three_prime_UTR [3r_11324337_11324879_-]; exon [3r_11324337_11324992_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################################################################################
TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAAATTAGTTAATGCTATCACACGAAAAGCTAATCCTCAAATCCACCATTTTAAACCTTAACTGGGTTGTAGTTACTACATACTTTGCTTTAGTTGTTATAAATGAATTTCATTGTCTATTTTGTTTCATAATTTATATGTCTATTTAAATACCTACCCTCTCTCCCCCACACAAAACGAACCGGAAACGGAAACGCATAGAGCTGCTATGAGGCATCAGATTTTCCCTAATAACGTTTGGTAGCACGATC
***********************************************************************************************************************..((((((((....(((........)))....)))))))).....(((((...)))))................************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR902008
ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
.......................................................................................................................CTTAACTGGGTTGTAGTTACT.............................................................................................................................................................................. 21 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAACGGAAACGCATAGAGCTGT............................................ 22 1 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACGGAAACGCATAGAGCTGCTATGAGGC.................................... 28 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTAACTGGGTTGTAGTTACT.............................................................................................................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGAAACGGAAACGGAAACGCATAGAGC............................................... 27 2 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGAAACGCATAGAGCTGCTATGAGG..................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGAAACGCATAGAGCTGCTATGAGGC.................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAACGGAAACGCATAGAGCTG............................................. 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTCATTGTCTATTTTGTTTCAT......................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................................................................................................AACGGAAACGCATAGAGCTGC............................................ 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AGTTACTACATACTTTGCTT................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGAAACGCATAGAGCTGCTAT......................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AACGCATAGAGCTGCTATGAGGC.................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...AGAAAGGCGCAGAACATCAAC.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........GCAGAACATCAACACGCCGTCGTGCGA.................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............AACATCAACACGCCGTCGTGCGAGAATCTG............................................................................................................................................................................................................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TAGTTAATGCTATCACACGAAAAGCTAA.......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGCTATGAGGCATCAGATTTTCCCTAA.................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTATTTTGTTTCATA........................................................................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..CAGAAAGGCGCAGAACATCAACAC................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ATGAAACGGAAACGGAAACGCATAGAGC............................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TACAGAAAGGCGCAGAACATC..................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AAACGCATAGAGCTGCTATGA....................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................TATGAGGCATCGGATTTTCC........................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCACACAAAACGAACCGGAAACG............................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................TTAACTGGGTTGTAGTTACC.............................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGAAACGCATAGAGCTG............................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGAGACGCATAGAGCTGC............................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CCTAATAACGTTTGGTAGC...... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......AAGGCGCAGAACATCAAC.................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAGCGGAAACGCATAGAGCTG............................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CGGAAACGCATAGAGCTGCTA.......................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TAACTGGGTTGTAGTTACT.............................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAATACCTACCCTCTCTCCC.................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.ACAGAAAGGCGCAGAACAT...................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CGGAAACGCATAGAGCTGCTATGAGG..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............CAGAACATCAACACGCCGTCG......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...AGAAAGGCGCAGAACATCAACAC................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................TTAACTGGGTTGTAGTTACG.............................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGGAAACGGAAACGCATAGAGCTGC............................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
TACAGAAGGGCGCAGAACATC..................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................ACTGGGTTGTAGTTACTACA........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................AACTGGGTTGTAGTTACTACATACT....................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GCAAACGAATAGAGCTGCGA.......................................... 20 3 15 0.60 9 0 0 9 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AACGAATAGAGCTGC............................................ 15 1 11 0.55 6 0 0 6 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAACTCGGTTGTAGTTACC.............................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................AAGTATTTAATCACAT.......................................................................................................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................CAAAATGAAACGGAAACGGAAACG....................................................... 24 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CAAACGAATAGAGCTGC............................................ 17 2 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AAACGAATAGAGCTGCGA.......................................... 18 2 10 0.30 3 0 0 3 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGCTTTAGTTGTTCTATAAGA................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................ACCTGCACTGGGTTGTA.................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CCCTAATAAAGTTTGG.......... 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AGGCAAACGAATAGAGCTGC............................................ 20 3 13 0.15 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TATGCGGCATCAGATT............................ 16 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................TTTGAAACCTTGACTGGG......................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CCCTAATAAAGTTTGGTGGA...... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TGCTGCTATGCGGCATCA................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................GCAAACGAATAGAGCTGC............................................ 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AACGAATAGAGCTGCGAAGA....................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGGTAGAAATGAATTTGATTG........................................................................................................................................ 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACGCAAACGCGTAGAGC............................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................AAGGGTTGTAGTTAATACA........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCCCCTCTCTCCCCCA................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGGGTTGTAGTTACCACC........................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATGTCTTTCCGCGTCTTGTAGTTGTGCGGCAGCACGCTCTTAGACGTTTTCATAAATTAGTGTATTTAATCAATTACGATAGTGTGCTTTTCGATTAGGAGTTTAGGTGGTAAAATTTGGAATTGACCCAACATCAATGATGTATGAAACGAAATCAACAATATTTACTTAAAGTAACAGATAAAACAAAGTATTAAATATACAGATAAATTTATGGATGGGAGAGAGGGGGTGTGTTTTGCTTGGCCTTTGCCTTTGCGTATCTCGACGATACTCCGTAGTCTAAAAGGGATTATTGCAAACCATCGTGCTAG
*************************************************************************************************************************..((((((((....(((........)))....)))))))).....(((((...)))))................*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.................................................TCATAAATTAGTGTAT......................................................................................................................................................................................................................................................... 16 0 2 39.00 78 51 14 12 0 0 0 1 0 0 0 0
.................................................TCATAAATTAGTGTA.......................................................................................................................................................................................................................................................... 15 0 2 22.50 45 24 12 8 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................TCCGTAGTCTAAAAGGGATT.................... 20 0 1 3.00 3 0 0 0 0 2 0 0 1 0 0 0
................................................TTCATAAATTAGTGTA.......................................................................................................................................................................................................................................................... 16 0 2 2.00 4 2 2 0 0 0 0 0 0 0 0 0
...............................................ATTCATAAATTAGTGTATATAA..................................................................................................................................................................................................................................................... 22 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
................................................TTCATAAATTAGTGTAT......................................................................................................................................................................................................................................................... 17 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................TAGGAGTTTAGGTGGTAAAAT...................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTATGGATGGAAGAGAGGGGG.................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AGTGCTTTTCGGTTAGGAGTTTA................................................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTAATCAATTACGATAGT....................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................GCTCTTAGACGTTTTCATAAA.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......TCCGCGTCTTGTAGTTGTGCG.............................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TCCGTAGTCTAAAAGGGATTA................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................AGAGGGGGTGTGTTTTGCT....................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................ACGCTCTTAGACGTTTTCATA.................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................TCATAAATTAGTGTATCT....................................................................................................................................................................................................................................................... 18 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................GGAGTTTAGGTGGTAAAATTT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATGGATGGGAGAGAGGGGGT................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................AAGTAACAGATAAAACAAAGT.......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTATGGAGGGGAGAGAGGGGGT................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................CGGCAGCACGCTCTTAGACGTT.......................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TTAGGAGTTTAGGTGGTAAAA....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................TTTCGGTTAGGAGTTTAGGAGGT........................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.......TCCGCGTCTTGTAGTTGTGC............................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................TTCATAAATTAGTGTATT........................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........GCGTCTTGTAGTTGTGCGGCA........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATCAATGATGTATGAAACGAA................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........CGCGTCTTGTAGTTGTGCGGC............................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................CATAAATTAGTGTAT......................................................................................................................................................................................................................................................... 15 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCAATGATGTATGAAACGAAAT............................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................TCATAAATTAGTGTATT........................................................................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGCGTATCTCGACGATACTCCGTAGT................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CGTAGTCTAAAAGGGA...................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......CCCGCGTCTTGTAGTTGTGCG.............................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................TCATAAATTAGTGTATGT....................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................TTCATAAATTAGTGT........................................................................................................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................CTTTCATAAATTAGTGTATAT....................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................GGCTGGGAGAGAGGGGC.................................................................................. 17 2 10 0.40 4 0 4 0 0 0 0 0 0 0 0 0
.......................................................................................................TAGGTTGGAAAATTTGGAACT.............................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCGAGGGGGTGTGTTTAGAT....................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................GGCTGGGAGAGAGGGG................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGCCTTTGCGAATCTCAA.............................................. 18 2 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................ATGCCTTTGCGAATCTCAA.............................................. 19 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0
.........CGCGTCTGGTTGTTGTGCG.............................................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTGGAATGGACCCAA....................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................GATACGCCGTAGTCT.............................. 15 1 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0
.................................................ACATAAATTAGTGTATATAA..................................................................................................................................................................................................................................................... 20 2 10 0.20 2 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGTGAGGGGGTGTGT............................................................................. 15 1 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0
.......................................................................................................................................................................................................................GGCTGGGAGAGAGGG.................................................................................... 15 1 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0
.................................................GCATAAATTAGTGTAT......................................................................................................................................................................................................................................................... 16 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................................ATAAATTAGTGTATATA...................................................................................................................................................................................................................................................... 17 1 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0
.................................................TCATAAATTAGCGTATGT....................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ATGATACGCCGTAGTCT.............................. 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
........CCGCGTCCGGTTGTTGTGCG.............................................................................................................................................................................................................................................................................................. 20 3 17 0.12 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAGTATGAGTTTAGGT.............................................................................................................................................................................................................. 17 2 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CTTGGCCCCTGCCTTTG........................................................ 17 2 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.................................................TCATAAATTGGTGTAT......................................................................................................................................................................................................................................................... 16 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTGCCTTGGCGAATCTCAA.............................................. 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.................................................ACATAAATTAGTGTAT......................................................................................................................................................................................................................................................... 16 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................CGAGTATGAGTTTAGGTAG............................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 1 0 0 0 0 0 1
.................................................TCATAAATTAGTGTATCA....................................................................................................................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................ATACGATTATGAGTTTAGGT.............................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
........CCGCGTCTTGGAGTTG.................................................................................................................................................................................................................................................................................................. 16 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AGGGATTATTTCAAA............ 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
.................................................GCATAAATTAGTGTA.......................................................................................................................................................................................................................................................... 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACAAAGTTTTAAATATA................................................................................................................ 17 1 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................GTAGTCTCAAAGGGAGT.................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................AGAGTGTGCGTTTCGA............................................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTGGCCCCTGCCTTTG........................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................CATAAATTAGTGTATATAAAAA.................................................................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGGGAGAGAGGGGCG................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............TCCGGTTGTTGTGCGGCAGC......................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................TCATAAATTAGTGTAGG........................................................................................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGTTTTTGGATGGGAG.......................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GGAGGGAGTGCGTTTTGCT....................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTAAATATATAGATAA......................................................................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TGCTTTTCGACTGGGAG..................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11324632-11324945 - dsi_30778 TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TAATCC-TC----AAATCCAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTT--AC---------------TACATAC-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTACCC--TCTCTCCCCCAC-----------------A----------CAAAACGAACCGGAAACGGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------ATCAGATTTTCCCTAATAACG-----------TTTGGTAGCA----CGATC
droSec2 scaffold_0:12154551-12154864 - TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGATAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TAATTC-TC----AAATCCAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTT--AC---------------TACATAC-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTACCC--TCTCTCCCCCAC-----------------C----------CAAAACGAAACGGAAACGGATACGCATAGAGC---TGCTATGAGAC-------------------------------------ATCAGATTTTCCCTAATAACG-----------TTTGGTAGCA----CGATC
dm3 chr3R:9860149-9860463 + TACAGAAAGGCGCAGAACATCAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TACTCC-TC----AAATCCACCACTA-------------------TTTG--AAACCT-----TAAC--TGCTGGGTTGTGTAGTT--AT---------------TGCATAT-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTTCCC--TCTCTCCCCCAA-----------------A-------AAAAAAAATGAAACGGAA--TGAAACGTATAGAGC---TGCTATGAGGC-------------------------------------ATCAGGTTTTCCCCAATAACG-----------TTTGGTA------------
droEre2 scaffold_4770:9401319-9401633 + TACAGAAAGGCGCAGAACATCAACACGCCTTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTATCACACGAAA-A-CC---CACTCTCCA---CAAA-CCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--AT---------------TGCATA--TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TGCGTAATCTATA-TGTC----------------TATTCA-AATAACTTCCC--TCTCTCCCCCAA-----------------C-------ACCCAAATTGAAACGGAA--TGAAACGCATAGAGG---TGCTATGATGC-------------------------------------ATCAGGTTTACCCTAGTACCG-----------TTTGGTAGCA----CGATC
droYak3 3R:16572825-16573143 - TATAGAAAGGCGCAGAACATCAACACGCCTTCGTGCGATAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTATCACACGACA-A-CAACCTACTCC-CC----AAATCCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--AC---------------TACATATTTTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTCA-AATACCTTCCC--TCTCTCCCCCCC-----------------AC-------CAAAAAATGAAACGGAA--TGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------ATCAGGTTTTCCCTAGTAACG-----------TTTGGTAGCT----CGATC
droEug1 scf7180000409802:86249-86577 - TACAGAAAGGCGCAGAATATCAATACGCCATCGTGCGAGAATCTACAAAAGTATTTAAGCACATAATTTAGTTAA--------------T-------GCTACTACACGAAA-T-CC---TACTTT-TCTCCCATATCCCC-A--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTCTTAT---------------AGTCT---ATTGCTT-TATTTGTTATAAAAGA---ATTTCATTGTCT--G-T-----TTGT-TTCATAATTTATA-TTTC----------------TATTCA-AATACCTTTCA--TCTCTCCCTCCT-CA-A----AAAACCAAAC-------CAAAAAACGAAATGGAA--TGAAATGCATAGAGC---TGCTATGAGAT-------------------------------------ATCAGGTTTTCCCTAGAAATG-----------TTTGGTAGCG----CGCTC
droBia1 scf7180000302402:2643022-2643332 + TACAGAAAGGCGCAGAACATCAATACGCCCTCGTGCGAAAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTACTACACGAAG-T-CC---TACATC-CC---TA--TACAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--TC---------------TACATAA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCTTAATTTATG-TGTC----------------TATTCA-ACTACCTTCCT--TCTCTCCCCCAC-----------------A----------AAAAACGAATTGGAA--CGAAACGAGTAGTTA---TGCTATGGGAG-------------------------------------ATCAGGTTTTCCCTAATAATG-----------TTTGGTAACA----CGATC
droTak1 scf7180000415380:745970-746289 + TACAGAAAGGCGCAGAACATCAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTACAACACGAAC-T-TC---TACTTC-CC---CATA--CCC-C--A-------------------TTTT--AAGCCT-----TAAC--T---GGGTTG--TAGTC--A-GTCACAC--------TACCTTATTTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCTTAATTTATA-TGTC----------------TATTCA-ACTACCTTCCC--TCTCTTCCCCAC-----------------ACCCG---ATATAAAACGAATTGGAT--CGAAACGCATAGATA---TGCAATGAGAA-------------------------------------ATCAGGTTTTCCTCAATAATG-----------TTTGGTAGCA---------
droEle1 scf7180000491047:1303394-1303701 - TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATTTGCAAAAGTATTTAATTACATAACTTAGTTAA--------------A-------GCTGCTACACGAAA-A-CA---TACTTC-CC---T-A--CCCC-C--T-------------------TTTT--AAGCCT-----TAAC--C---AGGTTG--TAGTC-------------------TACCTTA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTA----------------TATTCCTACTACCT-CCC--TCTCTCCCCCAT-----------------T----------CAAAACAAATCGGAA--TGAAACGCATAGAAC---TGCTACGAGCC-------------------------------------GTAGAGTGTTCCCCAAAAATG-----------TATGGTAGCA----CGATG
droRho1 scf7180000779165:42207-42520 + TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTGCTACACGAAA-C-CA---TACTTC-CC---CAAACCCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC-------------------TACCTAA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTCA-ACTACCT-CCC--TCTCTCCCCCAC-----------------C----------CAAAACGAATCGGAA--TGAAACGCATAGAAC---TGCTATGAGAC-------------------------------------GTCAGGTTTTCCCTAACATCG-----------TATGGTAGCAGGATCGATC
droFic1 scf7180000453912:366619-366925 + TACAGAAAGGCACAGAACATCAACACGCCGTCGTGCGAAAATCTGCAAAAGTATTTAATTACATAATTTAGTTAA--------------T-------GCTGCTACACGAAA-C-AC---TACTTT-------ATATC--C-C--C-------------------TTTT--AGACCT-----TAAC--T---GGGTTT--TAGAT-------------------TACCTAA-TTCGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTT----------------CGTTCA-ACAACCTTCCC--TCTCTCCCCCGC-----------------GC---------AAAAACGAATTGGAA--TGAATCGCAAAGAAT---CACTTTGAGAA-------------------------------------ATCAGATTTTCCCAAGTAACA-----------TATGGTAGCA----CGATC
droKik1 scf7180000302475:1283386-1283687 - TATCGAAAGGCGCAGAATATCAACACGCCGTCGTGCGAGAATTTGCAAAAGTATTTAATCACATAAATTAGTTAGATGT---------TT-------GCTGCTACACGAAA-AACC---TACATA-T-------TTCCCCCAT-A-------------------TTTT-AAAGCCT-----TAAC--T---GGGTTG--TCGT-----------------------------TTGCT--TAGTTGTTATAAAAGA---ATTTCATTATCTTTGTTT----TTGTTTTTATAATTTATAAAGTC----------------TGTTTAAACTACCTTTCC--CCCCTCTCTCCC-C------------------------------AT------GAA--TGAACAGCATAATGCTGATGCTATGACCC-------------------------------------TTCAGGTTCTTGCTAATAACA-----------AAGG---GCA----CGATC
droAna3 scaffold_13340:20614345-20614647 - TACAGAAAGGCGCAGAACATCAATACGCCGTCTTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAATTGCGCGTACACAAT-------GCTGATACACGAAAGAAAC---AACTTC-CT---C----CCTC-A--C-------------------TTTT--AAATC--------------------------------------------------------TTTGCTT-TAGTTGTTATAAATGA---ATTTC--TGTCT--T-AT----TTGT-TTTATAATTTATA-TGTC----------------TATTCA-ACTACCTTTCC--TCTCTCCCACGCACCTGAACC------------CGCAAAAAAAAAC-----AATA--CGAATCGCATAGAGC---TGCTATGAGAC-------------------------------------------TTATCAATGTTAACG-----------AATGGTAGCC--ACCGATC
droBip1 scf7180000396413:1788363-1788645 + TATAGAAAGGCGCAGAACATCAATACACCCTCTTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------TGCGCAACACGAGA-AAAC---AACTTC-CT---C----CCCCCA--C-------------------TTTT--AAATC--------------------------------------------------------TTTGCTT-AAGTTGTTATAAATGA---ATTACTTTGTCT--G-TT----TTGT-TTTATAATTTATA-TGTC----------------TACTCA-ACTACCTAA-TTATCTCACCCCCGC-----------------GCCCC---AAAAAAAACGAAAC------CCAATCGCATAGAGC---TGCTATGAGAC-------------------------------------------TTATCAATATTAACG-----------ATTGGTAGCA----CGATC
dp5 2:13536540-13536895 - TATCGCAAGGCGCAGAATATTAATACGCCTTCATGCGAGAATCTGCAAAAGTATTTAATCACATAATCTAGTTAT--------------TACAAGTGGATGCTACACGATA-T-TC-----------------------C-C--C------------------TT-TTAAAAACCA-----TTACTTT---TGGTTG--TAGTT--T-GTCCCCCACCCCCCCTCCACCC-GTTGCTTATAGTTGTTATAAATGA---ATTTTATTGAT-----------------TTATCATTTGAT-TGTTATCATTT------------T-----CACCTTTCC--CTTCTTTCAC-CGCCTAACTC------------CTCGAC--CA-----------------ATCAAATAGATT---TTATATATGGCACGACGGTCAACACGATCAGAGTACTTGGTAGAAGATGTC---TCTTCTCCAAAAGTGGAATATATATAAATTATAGTG----CAATC
droPer2 scaffold_0:6912866-6913221 + TATCGCAAGGCGCAGAATATCAATACGCCTTCATGCGAGAATCTGCAAAAGTATTTAATCACATAATCTAGTTAT--------------TACAAGTGGATGCTACACGATA-T-TC-----------------------C-C--C------------------TT-TTAAAAACCA-----TTACCTT---TGGTTG--TAGTT--T-GTCCCCCACCCCCCCTACACCC-GTTGCTTATAGTTGTTATAAATGA---ATTTTATTGATT-----------------TATCATTTGAT-TGTTATCATTTTCACATTTCCTTTCT-ATCACCG-------------------CCTAACTC------------CTCGAC--CA-----------------ATCAAATAGATT---TTATATATGGCACGACGGTCAACACGATCAGAGTACTTGGTAGAAGATGTC---TCTTCTCCAAAAGTGGAATATATATAAATTATAGTG----CAATC
droWil2 scf2_1100000004921:2006824-2006898 + TATCGAAAGGCGCAAAATATTAATACGCCGTCTTGTGAGAATCTGCAAAAGTATTTAACAACATAATTTAGTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:555905-556179 - TATCGGAAGGCTCAGAACATTAATACGCCGTCATGCGAGAACCTGCAAAAGTATTTAATCACATGATTTCAATAT-----------------------CCGCAATACG------------------------------CT-C--GCAATGAAATTTAAACGTGAT-TTAACC---ATTTTTT-CGTTT---TGGTTC--TAGTT--TT---------------TG------TCTGCC--TAGTTGTTATAAAATG--AGTTTTGTTTAAAA-A---TAATTTG---TTATAGTTTATG-CCTT----------------TTTT----------------------ACACGA---------GACACCACAT-------C--AAATCAAACTCAAAATATTTATGCATAGATT---TAATGAGAAAC-------------------------------------AGCCGACTTT-----------------------------------------
droMoj3 scaffold_6540:33227915-33228189 - TATCGGAAGGCTCAAAACATAAACACCCCCTCGTGTGATAATCTGCAAAAGTATATAATCACATGATTTCAATAT-----------------------CCACAATACG------------------------------CT-C--GCTATCAAATTTATACGTGAT-TTAGAC---ACATTTTTGTTTT---TGATTC--TAGTT--------------------------------TT-TATCTGTTATAAAATATGAGTTTTGTTCAAA--A---TAATATG---TTATAGTT---------ACGCCTTTGAC------ATATG-CATACATTTAC--ACATACCTACAC-----------------A----------CACATCAATTT-ACAACATTTACGCATAGTTT---TAATAAGAAAC-------------------------------------ATCAG----------------------------------------------
droGri2 scaffold_15074:3219852-3220081 + TACCGGAAGGCTCAGAACATAAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATTACATGATTTCAACA-----------------------TCTGCAATACGATA-A-TC-----------------------A-T-CGTAAAGAAATTTAAACGTGAT-T--------T-----CAAC--T---TATTTT--T------AT---------------CGTTTTA-TCTGCA--TAATTGTTATAAATTG---ATTTTTTCGTTC-TA-ACTGGATTG---TTATAGTTTATT--CCC----------------CACACA-AACACACACAC--ACTCTGTCTCAC-----------------A----------CA------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TAATCC-TC----AAATCCAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTT--AC---------------TACATAC-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTACCC--TCTCTCCCCCAC-----------------A----------CAAAACGAACCGGAAACGGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------ATCAGATTTTCCCTAATAACG-----------TTTGGTAGCA----CGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................CT-----TAAC--T---GGGTTG--TAGTT--AC---------------T.................................................................................................................................................................................................................................................................................................2114.00421000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAAACGCATAGAGC---TGT................................................................................................2213.00300000000000003000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACGGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------...................................................2813.00300000012000000000
...............................................................................................................................................................................T-----TAAC--T---GGGTTG--TAGTT--AC---------------T.................................................................................................................................................................................................................................................................................................2013.00330000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAACGCATAGAGC---TGCTATGAGG.........................................................................................2812.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------...................................................2912.00200000020000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAAACGCATAGAGC---TG.................................................................................................2112.00210000000000001000
....................................................................................................................................................................................................................................................................TTCATTGTCT--A-TT----TTGT-TTCAT...............................................................................................................................................................................................................................2212.00200000000200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAACGCATAGAGC---TGC................................................................................................2112.00211000000000000000
........................................................................................................................................................................................................AGTT--AC---------------TACATAC-TTTGCTT-..................................................................................................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAACGCATAGAGC---TGCTAT.............................................................................................2411.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAGC---TGCTATGAGGC-------------------------------------...................................................2311.00100010000000000000
...AGAAAGGCGCAGAACATCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
...........GCAGAACATCAACACGCCGTCGTGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...............AACATCAACACGCCGTCGTGCGAGAATCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
....................................................................TAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TAA.......................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATGAGGC-------------------------------------ATCAGATTTTCCCTAA...................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................CT--A-TT----TTGT-TTCATA..............................................................................................................................................................................................................................1511.00100000001000000000
..CAGAAAGGCGCAGAACATCAACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
TACAGAAAGGCGCAGAACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACGCATAGAGC---TGCTATGA...........................................................................................2111.00100000100000000000
...........................................................................................................................................................................................................................................................................................................................................................CCAC-----------------A----------CAAAACGAACCGGAAACG....................................................................................................................2311.00100001000000000000
...............................................................................................................................................................................T-----TAAC--T---GGGTTG--TAGTT--AC---------------C.................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGAAACGCATAGAGC---TG.................................................................................................2011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATAACG-----------TTTGGTAGC..........1911.00110000000000000000
......AAGGCGCAGAACATCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACGCATAGAGC---TGCTA..............................................................................................2111.00101000000000000000
.....................................................................................................................................................................................TAAC--T---GGGTTG--TAGTT--AC---------------T.................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................TA-AATACCTACCC--TCTCTCCC......................................................................................................................................................................2111.00100000000000001000
.ACAGAAAGGCGCAGAACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACGCATAGAGC---TGCTATGAGG.........................................................................................2611.00100000010000000000
............CAGAACATCAACACGCCGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...AGAAAGGCGCAGAACATCAACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...............................................................................................................................................................................T-----TAAC--T---GGGTTG--TAGTT--AC---------------G.................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGGAAACGGAAACGCATAGAGC---TGC................................................................................................2511.00100000000000010000
.......................................................................................................................................................................................AC--T---GGGTTG--TAGTT--AC---------------TACA..............................................................................................................................................................................................................................................................................................2011.00100000000010000000
......................................................................................................................................................................................AAC--T---GGGTTG--TAGTT--AC---------------TACATAC-T.........................................................................................................................................................................................................................................................................................2511.00101000000000000000
................................................AAGTATTTAATCACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
droSec2
TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGATAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TAATTC-TC----AAATCCAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTT--AC---------------TACATAC-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTACCC--TCTCTCCCCCAC-----------------C----------CAAAACGAAACGGAAACGGATACGCATAGAGC---TGCTATGAGAC-------------------------------------ATCAGATTTTCCCTAATAACG-----------TTTGGTAGCA----CGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................CAACACGCCGTCGTGCGATAATCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACG-----------TTTGGTAGCA----CGAT.2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATAACG-----------TTTGGTAGCA----.....2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACG-----------TTTGGTAGCA----CGAT.2011.0010100
..............GAACATCAACACGCCGTCGTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............CAGAACATCAACACGCCGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................................................................................................................GC---TAATTC-TC----AAATCCAC-C--A-------------------T............................................................................................................................................................................................................................................................................................................................................................2111.0011000
.........................................................................................................ACGAAA-A-GC---TAATTC-TC----AAATCCAC-C--.................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATTTTCCCTAATAACG-----------T..................2111.0011000
.........GCGCAGAACATCAACACGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..............................................................................................................................................................................................................................................................A---ATTTCATTGTCT--A-TT----TTGT-....................................................................................................................................................................................................................................2011.0010010
...................................................................................................TATCACACGAAA-A-GC---TAATT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............AACATCAACACGCCGTCGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGGATACGCATAGAGC---TGCT...............................................................................................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGC---TGCTATGAGAC-------------------------------------ATCA...............................................1911.0010010
................................................................................................................................................................................................................................ACATAC-TTTGCTT-TAGTTGTT..........................................................................................................................................................................................................................................................................2111.0010010
dm3
TACAGAAAGGCGCAGAACATCAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATCACATAAATTAGTTAA--------------T-------GCTATCACACGAAA-A-GC---TACTCC-TC----AAATCCACCACTA-------------------TTTG--AAACCT-----TAAC--TGCTGGGTTGTGTAGTT--AT---------------TGCATAT-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--A-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTTA-AATACCTTCCC--TCTCTCCCCCAA-----------------A-------AAAAAAAATGAAACGGAA--TGAAACGTATAGAGC---TGCTATGAGGC-------------------------------------ATCAGGTTTTCCCCAATAACG-----------TTTGGTA------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.......................................................................................................................................................................................AC--TGCTGGGTTGTGTAGTT--AT---------------TGCA..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................ACCT-----TAAC--TGCTGGGTTGTGTAGT......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............GAACATCAATACGCCATCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................A---ATTTCATTGTCT--A-TT----TTGT-T...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................CCACCACTA-------------------TTTG--AAACCT-----TAAC--T.....................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CTT-TAGTTGTTATAAATGA---ATTTCAT........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGAGC---TGCTATGAGGC-------------------------------------ATCAGGTT...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................C--TGCTGGGTTGTGTAGTT--AT---------------T.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ATA-TGTC----------------TATTTA-AATACCTTCCC--..............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTATAAATGA---ATTTCATTGTCT--.................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................GCTGGGTTGTGTAGTT--AT---------------TGC...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGGC-------------------------------------ATCAGGTTTTCCC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGAAACGTATAGAGC---TGCTATGAGGC-------------------------------------...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATGAGGC-------------------------------------ATCAGGTTTTCCCCAAT..................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAC--TGCTGGGTTGTGTAGTT--A..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ACCT-----TAAC--TGCTGGGTTGTGTA........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TACAGAAAGGCGCAGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAACGTATAGAGC---TGCTATGAGGC-------------------------------------...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................AT---------------TGCATAT-TTTGCTT-TAGT..............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GAAACGTATAGAGC---TGCTAT.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................CACGAAA-A-GC---TACTCC-TC----AAATC........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAAAGTATTTAATCACATAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................T--A-TT----TTGT-TTCATAATTTATA-TGT...................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTGTCT--A-TT----TTGT-TTCATA..............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................GCTGGGTTGTGTAGTT--AT---------------..................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTATA-TGTC----------------TATTTA-AATACCTTCCC--..............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAGTT--AT---------------TGCATAT-TTTGCTT-T.................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TGTC----------------TATTTA-AATACCTTCCC--TCTC..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TCCCCCAA-----------------A-------AAAAAAAATGAAACGGAA--T....................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTGCTT-TAGTTGTTATAAATGA---...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TGCTT-TAGTTGTTATAAATG...................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAC--TGCTGGGTTGTGTAGTT--AT---------------T.................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGTTATAAATGA---ATTTCATT.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TACAGAAAGGCGCAGAACATCAACACGCCTTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTATCACACGAAA-A-CC---CACTCTCCA---CAAA-CCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--AT---------------TGCATA--TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TGCGTAATCTATA-TGTC----------------TATTCA-AATAACTTCCC--TCTCTCCCCCAA-----------------C-------ACCCAAATTGAAACGGAA--TGAAACGCATAGAGG---TGCTATGATGC-------------------------------------ATCAGGTTTACCCTAGTACCG-----------TTTGGTAGCA----CGATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................TTCATTGTCT--G-TT----TTGT-TGC.................................................................................................................................................................................................................................2012.0020001010
................................................................................................................................................................................................................................................................................G-TT----TTGT-TGCGTAATCTAT........................................................................................................................................................................................................................1911.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGG---TGCTATGATGC-------------------------------------ATCAGGT............................................2511.0010001000
..................................................................................................................................................................................................................................ATA--TTTGCTT-TAGTTGTTATAAATGA---...............................................................................................................................................................................................................................................................2611.0010000010
..............................................................................................................................................................................................................................................................A---ATTTCATTGTCT--G-TT----TTGT-TGA.................................................................................................................................................................................................................................2311.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................TGAAACGCATAGAGG---TGCTATG............................................................................................2211.0010000010
..................................................................................................................................................................................................................................................................ATTTCATTGTCT--G-TT----TTGT-TGCGT...............................................................................................................................................................................................................................2411.0010000010
......................................................................................................................................................................................AAC--T---GGGTTG--TAGTC--AT---------------TGC...............................................................................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................AAACCT-----TAAC--T---GGGTTG--TAGTC--AT---------------TG................................................................................................................................................................................................................................................................................................2611.0011000000
.............................................................................................................................CCA---CAAA-CCCC-C--A-------------------TTTT--AAACCT-----T...........................................................................................................................................................................................................................................................................................................................................2411.0010100000
.ACAGAAAGGCGCAGAACATCAACAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
......................................................................................................................................................................................................................................................................CATTGTCT--G-TT----TTGT-TGCGT...............................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................ATTGAAACGGAA--TGAAACGCATA..........................................................................................................2311.0010000010
...............................................................................................................................A---CAAA-CCCC-C--A-------------------TTTT--AAAC...................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.........................................................................................................................................................................................................................................................................................TGT-TGCGTAATCTATA-TGTC----------------..................................................................................................................................................................................................2011.0010010000
........................................................................................................................................................................................................................................................................................TTGT-TGCGTAATCTATA-TGTC----------------T.................................................................................................................................................................................................2211.0011000000
droYak3
TATAGAAAGGCGCAGAACATCAACACGCCTTCGTGCGATAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTATCACACGACA-A-CAACCTACTCC-CC----AAATCCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--AC---------------TACATATTTTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTCA-AATACCTTCCC--TCTCTCCCCCCC-----------------AC-------CAAAAAATGAAACGGAA--TGAAACGCATAGAGC---TGCTATGAGGC-------------------------------------ATCAGGTTTTCCCTAGTAACG-----------TTTGGTAGCT----CGATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGC---TGCTATGAGGC-------------------------------------...................................................2014.00400200020000
.........................................................................................................................................................................................................................................................................................................................................................................................CAAAAAATGAAACGGAA--TGAAAC...............................................................................................................2312.00220000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GAAACGCATAGAGC---TGCTATGAGGC-------------------------------------...................................................2511.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------------------ATCAGGTTTTCCCTAGTAACG-----------TT.................2511.00101000000000
.............................................................................................................................................................................................................................................................GA---ATTTCATTGTCT--G-TT----TTGT-....................................................................................................................................................................................................................................2111.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGAGGC-------------------------------------ATCAGGTTTTCC.......................................2211.00100000010000
...........................................................CACATAATTTAGTTAA--------------T-------GCT.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCCCTAGTAACG-----------TTTGGTA............2311.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTAACG-----------TTTGGTAGCT----CGAT.2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GGAA--TGAAACGCATAGAGC---TGCTAT.............................................................................................2511.00100000010000
....................................................................................................................................................................................................G--TAGTC--AC---------------TACATATTTTTGC.....................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGC---TGCTATGAGGC-------------------------------------ATC................................................2111.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGTTTTCCCTAGTAACG-----------TTTGGTA............2811.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACG-----------TTTGGTAGCT----CGAT.2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTAGTAACG-----------TTTGGTAGCT----.....2311.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGC---TGCTATGAGGC-------------------------------------ATCAG..............................................2511.00101000000000
.....................................................................................................................CCTACTCC-CC----AAATCCCC-C--A-------------------T............................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACG-----------TTTGGTAGCT----CGAC.2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAGGC-------------------------------------ATCAGGTTTTCCCTAGT..................................2611.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................C-----------------AC-------CAAAAAATGAAACGGAA--TGAAAC...............................................................................................................2611.00100000010000
droEug1
TACAGAAAGGCGCAGAATATCAATACGCCATCGTGCGAGAATCTACAAAAGTATTTAAGCACATAATTTAGTTAA--------------T-------GCTACTACACGAAA-T-CC---TACTTT-TCTCCCATATCCCC-A--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTCTTAT---------------AGTCT---ATTGCTT-TATTTGTTATAAAAGA---ATTTCATTGTCT--G-T-----TTGT-TTCATAATTTATA-TTTC----------------TATTCA-AATACCTTTCA--TCTCTCCCTCCT-CA-A----AAAACCAAAC-------CAAAAAACGAAATGGAA--TGAAATGCATAGAGC---TGCTATGAGAT-------------------------------------ATCAGGTTTTCCCTAGAAATG-----------TTTGGTAGCG----CGCTCSizeHit CountTotal NormTotal
No Reads
droBia1
TACAGAAAGGCGCAGAACATCAATACGCCCTCGTGCGAAAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTACTACACGAAG-T-CC---TACATC-CC---TA--TACAC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC--TC---------------TACATAA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCTTAATTTATG-TGTC----------------TATTCA-ACTACCTTCCT--TCTCTCCCCCAC-----------------A----------AAAAACGAATTGGAA--CGAAACGAGTAGTTA---TGCTATGGGAG-------------------------------------ATCAGGTTTTCCCTAATAATG-----------TTTGGTAACA----CGATCSizeHit CountTotal NormTotal
No Reads
droTak1
TACAGAAAGGCGCAGAACATCAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTACAACACGAAC-T-TC---TACTTC-CC---CATA--CCC-C--A-------------------TTTT--AAGCCT-----TAAC--T---GGGTTG--TAGTC--A-GTCACAC--------TACCTTATTTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCTTAATTTATA-TGTC----------------TATTCA-ACTACCTTCCC--TCTCTTCCCCAC-----------------ACCCG---ATATAAAACGAATTGGAT--CGAAACGCATAGATA---TGCAATGAGAA-------------------------------------ATCAGGTTTTCCTCAATAATG-----------TTTGGTAGCA---------SizeHit CountTotal NormTotal
No Reads
droEle1
TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATTTGCAAAAGTATTTAATTACATAACTTAGTTAA--------------A-------GCTGCTACACGAAA-A-CA---TACTTC-CC---T-A--CCCC-C--T-------------------TTTT--AAGCCT-----TAAC--C---AGGTTG--TAGTC-------------------TACCTTA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTA----------------TATTCCTACTACCT-CCC--TCTCTCCCCCAT-----------------T----------CAAAACAAATCGGAA--TGAAACGCATAGAAC---TGCTACGAGCC-------------------------------------GTAGAGTGTTCCCCAAAAATG-----------TATGGTAGCA----CGATGSizeHit CountTotal NormTotal
No Reads
droRho1
TACAGAAAGGCGCAGAACATCAACACGCCGTCGTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------GCTGCTACACGAAA-C-CA---TACTTC-CC---CAAACCCCC-C--A-------------------TTTT--AAACCT-----TAAC--T---GGGTTG--TAGTC-------------------TACCTAA-TTTGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTC----------------TATTCA-ACTACCT-CCC--TCTCTCCCCCAC-----------------C----------CAAAACGAATCGGAA--TGAAACGCATAGAAC---TGCTATGAGAC-------------------------------------GTCAGGTTTTCCCTAACATCG-----------TATGGTAGCAGGATCGATCSizeHit CountTotal NormTotal
No Reads
droFic1
TACAGAAAGGCACAGAACATCAACACGCCGTCGTGCGAAAATCTGCAAAAGTATTTAATTACATAATTTAGTTAA--------------T-------GCTGCTACACGAAA-C-AC---TACTTT-------ATATC--C-C--C-------------------TTTT--AGACCT-----TAAC--T---GGGTTT--TAGAT-------------------TACCTAA-TTCGCTT-TAGTTGTTATAAATGA---ATTTCATTGTCT--G-TT----TTGT-TTCATAATTTATA-TGTT----------------CGTTCA-ACAACCTTCCC--TCTCTCCCCCGC-----------------GC---------AAAAACGAATTGGAA--TGAATCGCAAAGAAT---CACTTTGAGAA-------------------------------------ATCAGATTTTCCCAAGTAACA-----------TATGGTAGCA----CGATCSizeHit CountTotal NormTotal
No Reads
droKik1
TATCGAAAGGCGCAGAATATCAACACGCCGTCGTGCGAGAATTTGCAAAAGTATTTAATCACATAAATTAGTTAGATGT---------TT-------GCTGCTACACGAAA-AACC---TACATA-T-------TTCCCCCAT-A-------------------TTTT-AAAGCCT-----TAAC--T---GGGTTG--TCGT-----------------------------TTGCT--TAGTTGTTATAAAAGA---ATTTCATTATCTTTGTTT----TTGTTTTTATAATTTATAAAGTC----------------TGTTTAAACTACCTTTCC--CCCCTCTCTCCC-C------------------------------AT------GAA--TGAACAGCATAATGCTGATGCTATGACCC-------------------------------------TTCAGGTTCTTGCTAATAACA-----------AAGG---GCA----CGATCSizeHit CountTotal NormTotal
No Reads
droAna3
TACAGAAAGGCGCAGAACATCAATACGCCGTCTTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAATTGCGCGTACACAAT-------GCTGATACACGAAAGAAAC---AACTTC-CT---C----CCTC-A--C-------------------TTTT--AAATC--------------------------------------------------------TTTGCTT-TAGTTGTTATAAATGA---ATTTC--TGTCT--T-AT----TTGT-TTTATAATTTATA-TGTC----------------TATTCA-ACTACCTTTCC--TCTCTCCCACGCACCTGAACC------------CGCAAAAAAAAAC-----AATA--CGAATCGCATAGAGC---TGCTATGAGAC-------------------------------------------TTATCAATGTTAACG-----------AATGGTAGCC--ACCGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACG-----------AATGGTAGCC--ACCGATC2212.002020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGC---TGCTATGAGAC-------------------------------------------TTATCAATGT...................................2712.002000002
..............................................................................................................................................................................................................................................................................................................................................TCC--TCTCTCCCACGCACCTG.............................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGC---TGCTATGAGAC-------------------------------------------TTAT.........................................2111.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................CGAATCGCATAGAGC---TGCTATGAGAC-------------------------------------------T............................................2711.001000001
.....................................................................................................................................................................................................................................................TTATAAATGA---ATTTC--TGTCT--T-...............................................................................................................................................................................................................................................2111.001000010
........................................................................................................................................................................................................................................TTGCTT-TAGTTGTTATAAATGA---AT.............................................................................................................................................................................................................................................................2411.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................AATA--CGAATCGCATAGAGC---TGCTATGA...........................................................................................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................................CACGCACCTGAACC------------CGCAAAAAAAAC.................................................................................................................................2611.001010000
....................................GAGAATCTGCAAAAGTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAGC---TGCTATGAGAC-------------------------------------------T............................................2111.001000010
........................................................................................................................................................................................................................................................................................................................................................CCCACGCACCTGAACC------------CGC..........................................................................................................................................1911.001010000
................................................................................................................AAAC---AACTTC-CT---C----CCTC-A--C-------------------T............................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........CGCAGAACATCAATACGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................TCTCTCCCACGCACCTGAACC------------C............................................................................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACG-----------AATGGTAGCC--ACC....2011.001010000
....................................................................TAGTTAATTGCGCGTACACAAT-------GCT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................GCACCTGAACC------------CGCAAAAAA....................................................................................................................................2011.001010000
droBip1
TATAGAAAGGCGCAGAACATCAATACACCCTCTTGCGAGAATCTGCAAAAGTATTTAATCACATAATTTAGTTAA--------------T-------TGCGCAACACGAGA-AAAC---AACTTC-CT---C----CCCCCA--C-------------------TTTT--AAATC--------------------------------------------------------TTTGCTT-AAGTTGTTATAAATGA---ATTACTTTGTCT--G-TT----TTGT-TTTATAATTTATA-TGTC----------------TACTCA-ACTACCTAA-TTATCTCACCCCCGC-----------------GCCCC---AAAAAAAACGAAAC------CCAATCGCATAGAGC---TGCTATGAGAC-------------------------------------------TTATCAATATTAACG-----------ATTGGTAGCA----CGATCSizeHit CountTotal NormTotal
No Reads
dp5
TATCGCAAGGCGCAGAATATTAATACGCCTTCATGCGAGAATCTGCAAAAGTATTTAATCACATAATCTAGTTAT--------------TACAAGTGGATGCTACACGATA-T-TC-----------------------C-C--C------------------TT-TTAAAAACCA-----TTACTTT---TGGTTG--TAGTT--T-GTCCCCCACCCCCCCTCCACCC-GTTGCTTATAGTTGTTATAAATGA---ATTTTATTGAT-----------------TTATCATTTGAT-TGTTATCATTT------------T-----CACCTTTCC--CTTCTTTCAC-CGCCTAACTC------------CTCGAC--CA-----------------ATCAAATAGATT---TTATATATGGCACGACGGTCAACACGATCAGAGTACTTGGTAGAAGATGTC---TCTTCTCCAAAAGTGGAATATATATAAATTATAGTG----CAATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACACGATCAGAGTACTTGGTAGA.......................................................2812.0020100001000
.........................................................................................................................................................................................TTT---TGGTTG--TAGTT--T-GTCCCCCACC.......................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCAGAGTACTTGGTAGA.......................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCACGACGGTCAACACGATC......................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACACGATCAGAGTACTTGGTAGAA......................................................2711.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATCAAATAGATT---TTATATATGGCACGAC...................................................................................2811.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGA.......................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCACGACGGTCAACACGATCA.....................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTAGAAGATGTC---TCTT.........................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACACGATCAGAGTACTT.............................................................2211.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................CAC-CGCCTAACTC------------CTCGAC--C....................................................................................................................................2011.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCACGACGGTCAACACGATCAG....................................................................2611.0010100000000
..............................................................................................................................................................................................................................................ATAGTTGTTATAAATGA---ATTTTATT.......................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGGCACGACGGTCAACAC..........................................................................2311.0010010000000
...........................................................................................................................................................................................................T--T-GTCCCCCACCCCCCCTCCACCC-GT........................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGAAG.....................................................2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGAA......................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTC---TCTTCTCCAAAAGTGGAAT..........................2511.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGAGTACTTGGTAGA.......................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAACACGATCAGAGTACTTGGTA.........................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGT..........................................................2211.0010000100000
droPer2
TATCGCAAGGCGCAGAATATCAATACGCCTTCATGCGAGAATCTGCAAAAGTATTTAATCACATAATCTAGTTAT--------------TACAAGTGGATGCTACACGATA-T-TC-----------------------C-C--C------------------TT-TTAAAAACCA-----TTACCTT---TGGTTG--TAGTT--T-GTCCCCCACCCCCCCTACACCC-GTTGCTTATAGTTGTTATAAATGA---ATTTTATTGATT-----------------TATCATTTGAT-TGTTATCATTTTCACATTTCCTTTCT-ATCACCG-------------------CCTAACTC------------CTCGAC--CA-----------------ATCAAATAGATT---TTATATATGGCACGACGGTCAACACGATCAGAGTACTTGGTAGAAGATGTC---TCTTCTCCAAAAGTGGAATATATATAAATTATAGTG----CAATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGA.......................................................2516.006600000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGAAG.....................................................2716.006600000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTGGTAGAA......................................................2613.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATCAGAGTACTTGGTAGA.......................................................2212.002200000
.........................................................................................................................................................................................CTT---TGGTTG--TAGTT--T-GTCCCCCACCC......................................................................................................................................................................................................................................................................................................2612.002200000
...........GCAGAATATCAATACGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.....................................................................................................................................................................................................................................C-GTTGCTTATAGTTGTTATAAATGA---...............................................................................................................................................................................................................................................................2512.002200000
.........................................................................AT--------------TACAAGTGGATGCTACAC......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................CA-----TTACCTT---TGGTTG--TAGTT--T-GTCCCC...........................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACGATCAGAGTACTTG............................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................TCCTTTCT-ATCACCG-------------------CCTAACTC------------CTCGAC--.....................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................................ATAAATGA---ATTTTATTGATT-----------------..................................................................................................................................................................................................................................2011.001100000
...........GCAGAATATCAATACGCCTTCATGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droWil2
TATCGAAAGGCGCAAAATATTAATACGCCGTCTTGTGAGAATCTGCAAAAGTATTTAACAACATAATTTAGTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................TGTGAGAATCTGCAAAAGTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................TCTTGTGAGAATCTGCAAAAGTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
...........GCAAAATATTAATACGCCGTCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............AAAATATTAATACGCCGTCTTGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..........................GCCGTCTTGTGAGAATCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
TATCGGAAGGCTCAGAACATTAATACGCCGTCATGCGAGAACCTGCAAAAGTATTTAATCACATGATTTCAATAT-----------------------CCGCAATACG------------------------------CT-C--GCAATGAAATTTAAACGTGAT-TTAACC---ATTTTTT-CGTTT---TGGTTC--TAGTT--TT---------------TG------TCTGCC--TAGTTGTTATAAAATG--AGTTTTGTTTAAAA-A---TAATTTG---TTATAGTTTATG-CCTT----------------TTTT----------------------ACACGA---------GACACCACAT-------C--AAATCAAACTCAAAATATTTATGCATAGATT---TAATGAGAAAC-------------------------------------AGCCGACTTT-----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................T-CGTTT---TGGTTC--TAGTT--TT---------------TG------TCTGC.....................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000000010000000200000000000000000000000
..................ATTAATACGCCGTCATGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000100000000000000000010000000000000000000000000
...............................................................................................................................................................................ATTTTTT-CGTTT---TGGTTC--TAG.......................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000010010000000000000000000000000000000
........................................................................................................................................................................................GTTT---TGGTTC--TAGTT--TT---------------TG------TCT.......................................................................................................................................................................................................................................................................................2212.002000000000000000000000000020000000000000000000000000000000000000
..................................................................TTTCAATAT-----------------------CCGCAATACG------------------------------CT-C--.................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................T----------------------ACACGA---------GACACCACAT-------C--AAATCAAAC............................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................ACGCCGTCATGCGAGAACCTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTTTT-CGTTT---TGGTTC--TAGTT--TT---------------TG------TC........................................................................................................................................................................................................................................................................................2711.001000010000000000000000000000000000000000000000000000000000000000
...................................................................TTCAATAT-----------------------CCGCAATACG------------------------------CT-....................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
TATCGGAAGGCTCAGAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ATG-CCTT----------------TTTT----------------------ACACGA---------GACACC...................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..................................................GTATTTAATCACATGATTTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATACG------------------------------CT-C--GCAATGAAATTTAAACGT...............................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
...................................................................TTCAATAT-----------------------CCGCAATACG------------------------------CT-C--GCAAT............................................................................................................................................................................................................................................................................................................................................................................2611.001000000000001000000000000000000000000000000000000000000000000000
............CAGAACATTAATACGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................TTT-CGTTT---TGGTTC--TAGTT--TT---------------..................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
............CAGAACATTAATACGCCGTCATGCGAGAACCTGCAAAAGTATTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................4511.001000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A---------GACACCACAT-------C--AAATCAAACTCAA........................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAATG--AGTTTTGTTTAAAA-A---A............................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........GGCTCAGAACATTAATACGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................TACGCCGTCATGCGAGAACCTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.........................CGCCGTCATGCGAGAACCTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................T-----------------------CCGCAATACG------------------------------CT-C--GCAATGAA.........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................TATAAAATG--AGTTTTGTTTAAAA-.................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................T-CGTTT---TGGTTC--TAGTT--TT---------------TG------TC........................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................TTAATACGCCGTCATGCGAGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TAACC---ATTTTTT-CGTTT---TGGTTC--TAGT......................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
.....................AATACGCCGTCATGCGAGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................T---TAATGAGAAAC-------------------------------------AGCCGA.............................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................CGCCGTCATGCGAGAACCTGCAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CACCACAT-------C--AAATCAAACTCAAAAT.....................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..........................GCCGTCATGCGAGAACCTGCAAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.......................TACGCCGTCATGCGAGAACCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................AGTT--TT---------------TG------TCTGCC--TAGTT.............................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................ACGCCGTCATGCGAGAACCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................AATACG------------------------------CT-C--GCAATGAAATTT.....................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........GCTCAGAACATTAATACGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.................CATTAATACGCCGTCATGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TT---TGGTTC--TAGTT--TT---------------TG------TCTG......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.......................................................................ATAT-----------------------CCGCAATACG------------------------------CT-C--GCAATGAAAT.......................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...............AACATTAATACGCCGTCATGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATAGTTTATG-CCTT----------------TTTT----------------------ACACGA---------.........................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATAAAATG--AGTTTTGTTTAA....................................................................................................................................................................................................................................................2020.501000000000000001000000000000000000000000000000000000000000000000
droMoj3
TATCGGAAGGCTCAAAACATAAACACCCCCTCGTGTGATAATCTGCAAAAGTATATAATCACATGATTTCAATAT-----------------------CCACAATACG------------------------------CT-C--GCTATCAAATTTATACGTGAT-TTAGAC---ACATTTTTGTTTT---TGATTC--TAGTT--------------------------------TT-TATCTGTTATAAAATATGAGTTTTGTTCAAA--A---TAATATG---TTATAGTT---------ACGCCTTTGAC------ATATG-CATACATTTAC--ACATACCTACAC-----------------A----------CACATCAATTT-ACAACATTTACGCATAGTTT---TAATAAGAAAC-------------------------------------ATCAG----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................G---TTATAGTT---------ACGCCTTTGAC------AT...............................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................CATTTAC--ACATACCTACAC-----------------A----------C.....................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................TGTTCAAA--A---TAATATG---TT.................................................................................................................................................................................................................................1811.001100000
........................................................................................................TACG------------------------------CT-C--GCTATCAAATTTATACGT...............................................................................................................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................AATATG---TTATAGTT---------ACGCCTTTGAC------.................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................ACGCCTTTGAC------ATATG-CATA.......................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................TTT---TGATTC--TAGTT--------------------------------TT-TATCTGTT..........................................................................................................................................................................................................................................................................2411.001100000
...............AACATAAACACCCCCTCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................AATTT-ACAACATTTACGCATAGTT.......................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................TTAC--ACATACCTACAC-----------------A----------CACAT.................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................................................................................ATATG-CATACATTTAC--ACATACCTACAC-----------------.................................................................................................................................................2811.001100000
droGri2
TACCGGAAGGCTCAGAACATAAATACGCCATCGTGCGAGAATCTGCAAAAGTATTTAATTACATGATTTCAACA-----------------------TCTGCAATACGATA-A-TC-----------------------A-T-CGTAAAGAAATTTAAACGTGAT-T--------T-----CAAC--T---TATTTT--T------AT---------------CGTTTTA-TCTGCA--TAATTGTTATAAATTG---ATTTTTTCGTTC-TA-ACTGGATTG---TTATAGTTTATT--CCC----------------CACACA-AACACACACAC--ACTCTGTCTCAC-----------------A----------CA------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:40 AM