ID:

dsi_30773

 Coordinate:

3r:11236099-11236383 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.6 -4.1 -4.1

Flybase annnotation

exon [3r_11236384_11237159_-]; CDS [3r_11236384_11237159_-]; CDS [3r_11235946_11236098_-]; exon [3r_11235650_11236098_-]; intron [3r_11236099_11236383_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGTGTGGAGGTTGTTAAGAAGGTGCGTTGATATGAATGCGAGTGGGTGTGGCTGCACTAAAGATTAGGGCTATAAAAAGCAAACACAGTGTGTATATTGTATGTGATTTATTTATTGCTTTCAAATCGCCAAATTCATTATACTTTTGATTCACGATCTCTAAAAATATTTTGAATCATAATAAGGTCATATGTCTCACTTTTTACTTGAAAAGTAAATCATTACATTGTGCAAATCATAAATGATAAGTAATTTTAAATCATACTAAATCTGATTCATGTTTGATAATAACGTTTTACATTTTAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGA
************************************************************************************************************************************************************************************************************************(((((((.......(((((((...))))))).....))).))))....************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 O001
Testis
 M024
male body		 M053
female body
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
..................TGGCGGCCCTTGGTGTGGAGGTTT....................................................................................................................................................................................................................................................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................CTTGAAATCGACAGCGGCAGC............................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................GGTGTGGAGGTTGTTAAGAAG............................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................AAATCGACAGCGGCAGCGAGC......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CATATGTCTCACTTTTTACTT.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................GCGAGCTGACCGAAGCC.............. 17 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................AAATCATTACATTGTGCAAA......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................ACATTTTAGCTTGAAATC......................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................CAACGAGCTGACCGAAGCCTT............ 21 1 1 1.00 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAGG............................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TGAAATCGACAGCGGCAGCGAGCT........................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................AAATCATTACATTGTGCAAATC....................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TACATTTTAGCTTGAAATCG........................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................CCGAAGCCTTCCTGCAGGACGT 22 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................GAGGTTGTTAAGAAGC.............................................................................................................................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 1 0
....................................AGGTTGTGACGAAGGGGCG.......................................................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGAGCAAACCATAAATGA............................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................CACGAACTCTCACAATATTT......................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAGGAAAGGAGCTGCTCGACCGCCGGGAACCACACCTCCAACAATTCTTCCACGCAACTATACTTACGCTCACCCACACCGACGTGATTTCTAATCCCGATATTTTTCGTTTGTGTCACACATATAACATACACTAAATAAATAACGAAAGTTTAGCGGTTTAAGTAATATGAAAACTAAGTGCTAGAGATTTTTATAAAACTTAGTATTATTCCAGTATACAGAGTGAAAAATGAACTTTTCATTTAGTAATGTAACACGTTTAGTATTTACTATTCATTAAAATTTAGTATGATTTAGACTAAGTACAAACTATTATTGCAAAATGTAAAATCGAACTTTAGCTGTCGCCGTCGCTCGACTGGCTTCGGAAGGACGTCCTGCT
*************************************************************************************************************************(((((((.......(((((((...))))))).....))).))))....************************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................................................................................................................................................CGCTCGACTGGCTTCGGAAGGACGT...... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGTATGATTTAGACTAAGT.............................................................................. 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AACACGTTTAGTATTTACTATTCATT........................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTGTGCTAGAGATCTTTATAAAACT...................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................CTAAGTGCTAGAGATT................................................................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGTGCTAGAGATCTTTATAAAACTTAGT.................................................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TAGACTAAGTACAAACTATTATTGCA.............................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GTAAAGTCGAACTTTAGCTGTTGCCGT............................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................CCGTCGCTCGACTGGCTTC................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TCCAGTATACAGAGTG............................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...GAAAGGAGCTGCTCGGCCGC.......................................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TCATTAAAATTTAGTATGATTTAGACT.................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................GTGCTAGAGATCTTTATAAAA........................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATGAAAACTAAGTGCTAGAG.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGTGCTAGAGATTTTTATAAAACTT..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................GCTTCGGAAGGACGTCCTGCT 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGTATTATTCCAGTATACAGAGTGAAA.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTAGGTAATATGAGGACTAA............................................................................................................................................................................................................. 21 3 5 0.60 3 0 0 0 0 2 0 1 0 0 0 0
.........................................................................................................................................ATAAATAACGAAAGTTTAAGAGT................................................................................................................................................................................................................................. 23 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TTATAATTTAGTATGATT........................................................................................ 18 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TAATTGCTAGACATTATTATA........................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................TTAGGTAATATGAGGACTAA............................................................................................................................................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGTATACAGGGTGAACAA........................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................TTTAGGTAATATGAGGACTA.............................................................................................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
......AGGAGCCGCTCGACCGCT......................................................................................................................................................................................................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................ACTAAGTGCACGAGATT................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11236049-11236433 - dsi_30773 CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGTGTGGAGGTTGTTAAGAAGGTGCGTTGATATGAA---------T--GCGAGTGGGTGTGGCTGCAC-------------------TAAAGATTAGGGCTATAAAAAGCAAACACAGTGTGTATATTGTATGTGATT--T------------------------ATTTATTGCTTTCAAATCGCCAAATTCATTATACTTTTGATTCACGATCTCTAAAAATATTTTGAATCATAATAAGGTCATATGTCTCAC-------------------TTTTTACTTGAAAAGTAAATCATTACATTGTG-------------------------------------------------CAAATCATAAATGATAAG-------TAATTTTAAATCATACTAAATCTGA-TTCATG--------------------------TTTGATAATAACGTTT-----TA-----CATTTTAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGA
droSec2 scaffold_0:12066550-12066934 - CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGGTGCGTTGATATGAA---------T--GCCAGTGGGTGTAGCTGCTC-------------------TAAAGATTAGGGCTATAAAAAGCAAACACAGTGTGTATATTGTATGTGATT--T------------------------ATTTATTGCTTTCAAATCTCCAAATTCATTATACTTTTGATTCACGATCTCTAGAAATATTTTGAATCATAATTAGGTCATATGTCTCAC-------------------TTTTTACTTGAAAAGTAAATCATTACATTGTG-------------------------------------------------CAAATCATAAATGATAAG-------TAATTTAAAATCATACTAAATCTGA-TTCATG--------------------------TTTGCTAACAACGTTT-----TA-----CATTTCAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGA
dm3 chr3R:9949423-9949806 + CTCCTTTTCTCGACGAGCTCGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGGTGAGTTGATATGAA---------T--GCGAGTGGGTGTGGCTGCGCTAATA----------GCACTAAAGATTAGGGCTATAAAAAGCAAAAGCAGGGTATATATTGTTTGTGATT--T------------------------ATTTATTGCTTTCAAATCGCCACATTCACTATACTTTTGATTCACGATCTCTAGAAATATTTTGAATCATAATTAGGGCGAATGTCTCAC-------------------TTTTCACTTGAAATAGAAATC---------TG-------------------------------------------------TAAATCATAAATAATGAG-------TAATTTTAAATCATACTAAATCTGA-TTCATG--------------------------TTT-CTAACAACGTTT-----TA-----CATTTCAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCTTGCAGGACGA
droEre2 scaffold_4770:9498329-9498755 + CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTAGAGGTTGTTAAGAAGGTGGGTTGATATGAA---------T--GCGAGCGGGTGTGGCTGCATTAGTAATAAATGATTGTAATAAAGATTAGGGCAATAAAAATCAAAAGCAATGTGTATATTGCATTTGATT--TCACCAATCGGTTTGATATTTTCAGATTTATTGTTTTCAAATTGCTAAATTCACTATACGTATGATTCAAAATCTCTACAAATATTTGTAATCATTATTAATGCATTTTTTTCAG-------------------TTTACCCTTTAAAATTAAACCATTACTTTGTG-------------------------------------------------TACATCATAA-TTATGAG-------TAATTTTAAATCATACTAAATTTGA-ATAATG--------------------------TTGGCTAACAACGCTT-----TA-----TATTTCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTTCTGCAGGACGA
droYak3 3R:16478920-16479310 - CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTAGAGGTCGTTAAGAAGGTGGGTTCATATGAA---------T--GTGATCGGGTGTGGCTGCATTAATAATTAATGATTGTACTAAAGATTAGGGTTATACAAATCATGAGCGCTGTGTATATAGCATTTAATT--TCACCAATCGGTTTTATATTTTTAGATTTATTGCTTTC-------------------ACTTCTGATTCATAATCTAAAGAAATATT-TGAATCATATTTAAG-CGTATTTCGCAG-------------------T--------------GAAATCATTACTTTCTC-------------------------------------------------TAGATCATAAGTTATGAG-------TAACTTTAAATCATACTAAGTTTTAATTAATT--------------------------TTTGCAA---ACGTTC-----TT-----TATTTCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTTCTGCAGGACGA
droEug1 scf7180000409584:567049-567419 - CTCCCTTCCTCGAAGAGCTAGCAGCTCTCGGCGTGGAGGTCGTGAAGAAGGTACGTTAATATGTC---------TTTCGGAGCGGGTGTGGCTGCTACAATA----------ACACTAAAGATTAGGGCTATAAAAATCAAAAATAAATTGTATACA---------------------TGTTGCTAA---------TTTTAGGTCTGAAATT--------------ATTTCTGATTCAGATTATGAAGAATCATAATGAATCAGAACCAGCCAGTTAGACT-AC-------------------TTT-----TGAATCAGAAATC---------TGTAAAGCTATTCTGAATAGTTTAAGTACTATTATTATTA---------------------------------------------CTTACATTA----TTTTTTAACC--------------------------CTTGCTAATATCCTTT-----TA-----TCCATCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTATCTACAGGATGA
droBia1 scf7180000302402:2751977-2752280 + CTCCGTTCTTGGAGGAGCTGGCTGCCCTCGGCGTGGAGGTCGTCAAGAAGGTGTGTAT-----------------CGTTGAGTAGGTTTGGCTGCAC-------------------TAATTATTAGGGCTATAAGAATCGGAAATGATGAGTATATTG---ATCATTTCCGTTCAAGTGGCCTCTTATTTATAGATTTATAGCCCTGAAATCATCAAATGCGCCTTGCTT---------------------------------------------------------------------------------------------------------TAAAGCTAT-----------------------------------------------------------------------------------------TTTTGTT-ATCGAGTGTATATATGTA-----CATTTTGCTAACTGAACTC-----TA-----TCCCCCAGCTGGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGA
droTak1 scf7180000415380:862124-862400 + CTCCCTTCCTCGAGGAGCTGGCGGCCCTCGGCGTTGAGGTTGTGAAGAAGGTGGGTTGATATGAC---------T--ACAAACAGC--------------------------------AAGATTAGGGCTATAAAAATCTAAAATAATGATTTTATTG---ATCATTTCCCATTAATAAGTCGTATATTTATAGATTTATGTCTCTGAAATCACGAAATACGCATTACTT---------------------------------------------------------------------------------------------------------TAAAGCTAT-----------------------------------------------------------------------------------------TTTTGATT--------------------------CTTACTAACTTTTTTG-----TA-----CCCCATAGCTCGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTCCAAGACGA
droEle1 scf7180000491047:1197929-1198285 - CTCCCTTCCTCGAGGAGCTAGCGGCCCTCGGCGTGGAGGTCGTCAAGAAGGTGAGTTTATATAAC---------TTAATGAGCAGGTGTGACTGCACTTATT----------ACACTGAAGATAAGGGCTATAAAAATCCAAAATTAT----------------------TACCAATAGGTCTTATATTTTTGTGTTTATTGGTATGATACCATCAAACACGCAGCATTTCTGATTCATAAGTCTAAGAA-C--------------------------------------------------------------------------------------------------------------AGTTATCCTTATACCTATACTTTAAATCATAAACAATAGTTTATAAATGATTTC-------ATTAAA------TTGATT------------------TGTAATAATCTTTT-----TGTTTAT---TA-----TTCCTCAGCTGGAAATCGACAGCGGTAGCGAGTTGACCGAAGCTTTCCTGCAAGACGA
droRho1 scf7180000778033:17812-18157 + CTCCCTTCCTCGAGGAGCTGGCGGCCCTCGGCGTCGAGGTCGTCAAGAAGGTGCGTTTATATGATCTATCAATCTTTACGAGCAGGTGTGGCTGCACTAATG----------ACACTAAAGATTATGGCTAA------------------------TG---GTGATTTCCCATCAATATGTCGCTTATTTATAGATTTATTGGGCGGAAATCACCAATTACGAATTAGTT-------------------------------------------------CGCAGTCAGCTAAACTTATAATTTCTT-----AAAATTGGAAATC---------CCTACAATTATTTTG----------------------------------------------------------AATTGGTTTC-------GTTAAT------ATGAA---------------------TAATAATT-----ACTTTGTTT-----TA-----TCCCCCAGTTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTCCTGCAGGATGA
droFic1 scf7180000453912:455881-455941 + CTCCTTTCCTCGACGAACTGGCCGCCCTCGGCGTGGAGGTCGTCAAAAAGGTGCGTGGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000297719:28767-28864 - TAAA---------------------------------------------------------------------------------------------------------------------TTTGGGGCTTTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTTATT-----TATACATTTTTA-----ATTTTTAGCTGGAAATCGACAACGGCAGCGAGCTTACCGAGGCCTATCTGCAGGAGGA
droAna3 scaffold_13340:20516097-20516158 - TCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTACAGCTGGAAATTGACAGTGGCAGCGAGCTAACTGAAGCCTTCCTGCAAGACGA
droBip1 scf7180000396413:1889593-1889656 + GTTCTTTGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTCGAAATCGACAGCGGCAGCGAGTTGACTGAAGCCTTCCTGCAAGACGA
dp5 2:13438040-13438107 - CGCCGTTCCTCGAGCAGCTGGCGGCCCTGGGCGTCGATGTGGTTAAGAAGGTATGTGGAAAGGTC---------T--GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:7011263-7011330 + CGCCGTTCCTCGAGCAGCTGGCGGCCCTGGGAGTCGATGTGGTTAAGAAGGTATGTGGAAAGGTC---------T--GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:10824452-10824578 + CAAATTATACA-----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------TAAAGCTAG-----------------------------------------------------------------------------------------TTTTGGCTTTTGGGTAT---TAGAAACATCATAACTTATC-----TTTAC-----AT-----TCTTTCAGTTGGAAATTGATAGCGGAAGCGAACTAACCGAAGCCTATTTGCTGGACGA
droVir3 scaffold_13047:17988819-17988896 + TTTGACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----TATTTGCCAATATAGCTGGAAATCGACAGCGGCGACGAACTGACCGAGGAGTATCTGCAGGAGGA
droMoj3 scaffold_6540:13722915-13722976 - TTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACAGCTGGAAATCGACAGCGGCAACGAACTCACCGAGCAATACCTGCAGGACGA
droGri2 scaffold_14846:27681-27749 + CGCCGTTCATTGAACAGCTCGCGGAGCTGGGTATCAATGTGGACAAGAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAAATCGATGCGGGCG-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGTGTGGAGGTTGTTAAGAAGGTGCGTTGATATGAA---------T--GCGAGTGGGTGTGGCTGCAC-------------------TAAAGATTAGGGCTATAAAAAGCAAACACAGTGTGTATATTGTATGTGATT--T------------------------ATTTATTGCTTTCAAATCGCCAAATTCATTATACTTTTGATTCACGATCTCTAAAAATATTTTGAATCATAATAAGGTCATATGTCTCAC-------------------TTTTTACTTGAAAAGTAAATCATTACATTGTG-------------------------------------------------CAAATCATAAATGATAAG-------TAATTTTAAATCATACTAAATCTGA-TTCATG--------------------------TTTGATAATAACGTTT-----TA-----CATTTTAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................TGGCGGCCCTTGGTGTGGAGGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAATCGACAGCGGCAGC.............................2112.00200000200000000000
.............................GGTGTGGAGGTTGTTAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGACAGCGGCAGCGAGC.........................2111.00100000000001000000
................................................................................................................................................................................................................................................................................CATATGTCTCAC-------------------TTTTTACTT.................................................................................................................................................................................................................................................2111.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCTGACCGAAGCC..............1711.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................AAATCATTACATTGTG-------------------------------------------------CAAA.....................................................................................................................................................................2011.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CATTTTAGCTTGAAATC.........................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAGG.............................2011.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCGACAGCGGCAGCGAGCT........................2411.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................AAATCATTACATTGTG-------------------------------------------------CAAATC...................................................................................................................................................................2211.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----CATTTTAGCTTGAAATCG........................................2011.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGCCTTCCTGCAGGACGT2211.00101000000000000000
...................................GAGGTTGTTAAGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1650.20100000010000000000
droSec2
CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGGTGCGTTGATATGAA---------T--GCCAGTGGGTGTAGCTGCTC-------------------TAAAGATTAGGGCTATAAAAAGCAAACACAGTGTGTATATTGTATGTGATT--T------------------------ATTTATTGCTTTCAAATCTCCAAATTCATTATACTTTTGATTCACGATCTCTAGAAATATTTTGAATCATAATTAGGTCATATGTCTCAC-------------------TTTTTACTTGAAAAGTAAATCATTACATTGTG-------------------------------------------------CAAATCATAAATGATAAG-------TAATTTAAAATCATACTAAATCTGA-TTCATG--------------------------TTTGCTAACAACGTTT-----TA-----CATTTCAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAAATCGACAGCGGCAGCGAGC.........................2711.0011000
CTCCTTTCCTCGACGAGCTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCGGCAGCGAGC.........................1911.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAGC.............................2011.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAGCG............................2111.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCGGCAGCGAGCTGT......................2211.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCGGCAGCGAGCT........................1811.0010001
......................................................................................................................................................................................................................................................................................TCTCAC-------------------TTTTTACTTGAAAAG...........................................................................................................................................................................................................................................2111.0011000
dm3
CTCCTTTTCTCGACGAGCTCGCGGCCCTTGGCGTGGAGGTTGTTAAGAAGGTGAGTTGATATGAA---------T--GCGAGTGGGTGTGGCTGCGCTAATA----------GCACTAAAGATTAGGGCTATAAAAAGCAAAAGCAGGGTATATATTGTTTGTGATT--T------------------------ATTTATTGCTTTCAAATCGCCACATTCACTATACTTTTGATTCACGATCTCTAGAAATATTTTGAATCATAATTAGGGCGAATGTCTCAC-------------------TTTTCACTTGAAATAGAAATC---------TG-------------------------------------------------TAAATCATAAATAATGAG-------TAATTTTAAATCATACTAAATCTGA-TTCATG--------------------------TTT-CTAACAACGTTT-----TA-----CATTTCAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCTTGCAGGACGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................ATCGCCACATTCACTATACTT...................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGACGAGCTCGCGGCCCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCTTTTCTCGACGAGCTCGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTCACGATCTCTAGAAATATT..........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCTGACCGAAGCCTTCT..........2112.0020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................AATA----------GCACTAAAGATTAGGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200
......................GGCCCTTGGCGTGGAGGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...............AGCTCGCGGCCCTTGGCGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGGAGGTTGTTAAGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATATGAA---------T--GCGAGTGGGTGTGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATCTCTAGAAATATTTTGA......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACTAAATCTGA-TTCATG--------------------------TTT-C.................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................ACTAAAGATTAGGGCTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGCCTTCTTGCAGGACG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................TTGTTAAGAAGGTGAGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CTATACTTTTGATTCACGATC......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCGGCAGCGAGCTG.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAG..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................ATGAA---------T--GCGAGTGGGTGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGAAATCGACAGCGGCAG..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCTCGACGAGCTCGCGGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATCTGA-TTCATG--------------------------TTT-CT................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GGCCCTTGGCGTGGAGGTTGTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....TTTTCTCGACGAGCTCGCGGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCAGCGAGCTGA......................2711.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACGAGCTCGCGGCCCTTGGCGTGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................CGGCCCTTGGCGTGGAGGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......TCTCGACGAGCTCGCGGCCCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGTGGAGGTTGTTAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CCCTTGGCGTGGAGGTTGTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................GCGTGGAGGTTGTTAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GAGCTCGCGGCCCTTGGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAATCGACAGCGGCAGCGA...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAAGCCTTCTTGCAGGA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................GTGGAGGTTGTTAAGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATCGACAGCGGCAGCGAGCT........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................CTTGGCGTGGAGGTTGTTAAGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGAGCTCGCGGCCCTTGGCGTGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................TTTGAATCATAATTAGGGCGA......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................CCTTGGCGTGGAGGTTGTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........CGACGAGCTCGCGGCCCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...CTTTTCTCGACGAGCTCGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCGGCCCTTGGCGTGGAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAATCGACAGCGGCA...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTCTCGACGAGCTCGCGGCCCTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................ATACTTTTGATTCACGATCTC....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCTTTTCTCGACGAGCTCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAGTTGATATGAA---------T--GCGAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCGGCCCTTGGCGTGGAGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................GTCTCAC-------------------TTTTCACTTGAAAT............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTCAC-------------------TTTTCACTTGAAATAGA.........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAAGCCTTCTTGCAGG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTAGAGGTTGTTAAGAAGGTGGGTTGATATGAA---------T--GCGAGCGGGTGTGGCTGCATTAGTAATAAATGATTGTAATAAAGATTAGGGCAATAAAAATCAAAAGCAATGTGTATATTGCATTTGATT--TCACCAATCGGTTTGATATTTTCAGATTTATTGTTTTCAAATTGCTAAATTCACTATACGTATGATTCAAAATCTCTACAAATATTTGTAATCATTATTAATGCATTTTTTTCAG-------------------TTTACCCTTTAAAATTAAACCATTACTTTGTG-------------------------------------------------TACATCATAA-TTATGAG-------TAATTTTAAATCATACTAAATTTGA-ATAATG--------------------------TTGGCTAACAACGCTT-----TA-----TATTTCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTTCTGCAGGACGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGTTGACCGAAGCCTTTCTGCA......2611.0011000000
................GCTGGCGGCCCTTGGCGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACCGAAGCCTTTCTGC.......2011.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATCGACAGCGGCAGCG............................2111.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAATCGACAGCGGCAGCGA...........................2311.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAAATCGACAGCGGCAGC.............................2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAAGCCTTTCTGCAGGA...2211.0011000000
droYak3
CTCCTTTCCTCGACGAGCTGGCGGCCCTTGGCGTAGAGGTCGTTAAGAAGGTGGGTTCATATGAA---------T--GTGATCGGGTGTGGCTGCATTAATAATTAATGATTGTACTAAAGATTAGGGTTATACAAATCATGAGCGCTGTGTATATAGCATTTAATT--TCACCAATCGGTTTTATATTTTTAGATTTATTGCTTTC-------------------ACTTCTGATTCATAATCTAAAGAAATATT-TGAATCATATTTAAG-CGTATTTCGCAG-------------------T--------------GAAATCATTACTTTCTC-------------------------------------------------TAGATCATAAGTTATGAG-------TAACTTTAAATCATACTAAGTTTTAATTAATT--------------------------TTTGCAA---ACGTTC-----TT-----TATTTCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTTCTGCAGGACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......TCCTCGACGAGCTGGCGGCCCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGTTGACCGAAGCCTTT...........2111.00101000000000
...........................TTGGCGTAGAGGTCGTTAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
..................................................................................................................................ATACAAATCATGAGCGCTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCGGCAGCGAGTTGACC....................2411.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATCGACAGCGGCAG..............................1911.00100000010000
..................................................................................................................................................................................................ATTTATTGCTTTC-------------------ACTTCTGA...............................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................CCTTGGCGTAGAGGTCGTTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
CTCCCTTCCTCGAAGAGCTAGCAGCTCTCGGCGTGGAGGTCGTGAAGAAGGTACGTTAATATGTC---------TTTCGGAGCGGGTGTGGCTGCTACAATA----------ACACTAAAGATTAGGGCTATAAAAATCAAAAATAAATTGTATACA---------------------TGTTGCTAA---------TTTTAGGTCTGAAATT--------------ATTTCTGATTCAGATTATGAAGAATCATAATGAATCAGAACCAGCCAGTTAGACT-AC-------------------TTT-----TGAATCAGAAATC---------TGTAAAGCTATTCTGAATAGTTTAAGTACTATTATTATTA---------------------------------------------CTTACATTA----TTTTTTAACC--------------------------CTTGCTAATATCCTTT-----TA-----TCCATCAGCTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTATCTACAGGATGASizeHit CountTotal NormTotal
No Reads
droBia1
CTCCGTTCTTGGAGGAGCTGGCTGCCCTCGGCGTGGAGGTCGTCAAGAAGGTGTGTAT-----------------CGTTGAGTAGGTTTGGCTGCAC-------------------TAATTATTAGGGCTATAAGAATCGGAAATGATGAGTATATTG---ATCATTTCCGTTCAAGTGGCCTCTTATTTATAGATTTATAGCCCTGAAATCATCAAATGCGCCTTGCTT---------------------------------------------------------------------------------------------------------TAAAGCTAT-----------------------------------------------------------------------------------------TTTTGTT-ATCGAGTGTATATATGTA-----CATTTTGCTAACTGAACTC-----TA-----TCCCCCAGCTGGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTGCAGGACGASizeHit CountTotal NormTotal
No Reads
droTak1
CTCCCTTCCTCGAGGAGCTGGCGGCCCTCGGCGTTGAGGTTGTGAAGAAGGTGGGTTGATATGAC---------T--ACAAACAGC--------------------------------AAGATTAGGGCTATAAAAATCTAAAATAATGATTTTATTG---ATCATTTCCCATTAATAAGTCGTATATTTATAGATTTATGTCTCTGAAATCACGAAATACGCATTACTT---------------------------------------------------------------------------------------------------------TAAAGCTAT-----------------------------------------------------------------------------------------TTTTGATT--------------------------CTTACTAACTTTTTTG-----TA-----CCCCATAGCTCGAAATCGACAGCGGCAGCGAGCTGACCGAAGCCTTCCTCCAAGACGASizeHit CountTotal NormTotal
No Reads
droEle1
CTCCCTTCCTCGAGGAGCTAGCGGCCCTCGGCGTGGAGGTCGTCAAGAAGGTGAGTTTATATAAC---------TTAATGAGCAGGTGTGACTGCACTTATT----------ACACTGAAGATAAGGGCTATAAAAATCCAAAATTAT----------------------TACCAATAGGTCTTATATTTTTGTGTTTATTGGTATGATACCATCAAACACGCAGCATTTCTGATTCATAAGTCTAAGAA-C--------------------------------------------------------------------------------------------------------------AGTTATCCTTATACCTATACTTTAAATCATAAACAATAGTTTATAAATGATTTC-------ATTAAA------TTGATT------------------TGTAATAATCTTTT-----TGTTTAT---TA-----TTCCTCAGCTGGAAATCGACAGCGGTAGCGAGTTGACCGAAGCTTTCCTGCAAGACGASizeHit CountTotal NormTotal
No Reads
droRho1
CTCCCTTCCTCGAGGAGCTGGCGGCCCTCGGCGTCGAGGTCGTCAAGAAGGTGCGTTTATATGATCTATCAATCTTTACGAGCAGGTGTGGCTGCACTAATG----------ACACTAAAGATTATGGCTAA------------------------TG---GTGATTTCCCATCAATATGTCGCTTATTTATAGATTTATTGGGCGGAAATCACCAATTACGAATTAGTT-------------------------------------------------CGCAGTCAGCTAAACTTATAATTTCTT-----AAAATTGGAAATC---------CCTACAATTATTTTG----------------------------------------------------------AATTGGTTTC-------GTTAAT------ATGAA---------------------TAATAATT-----ACTTTGTTT-----TA-----TCCCCCAGTTGGAAATCGACAGCGGCAGCGAGTTGACCGAAGCCTTCCTGCAGGATGASizeHit CountTotal NormTotal
No Reads
droFic1
CTCCTTTCCTCGACGAACTGGCCGCCCTCGGCGTGGAGGTCGTCAAAAAGGTGCGTGGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TAAA---------------------------------------------------------------------------------------------------------------------TTTGGGGCTTTATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATTTATT-----TATACATTTTTA-----ATTTTTAGCTGGAAATCGACAACGGCAGCGAGCTTACCGAGGCCTATCTGCAGGAGGASizeHit CountTotal NormTotal
No Reads
droAna3
TCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTACAGCTGGAAATTGACAGTGGCAGCGAGCTAACTGAAGCCTTCCTGCAAGACGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAGTGGCAGCGAGCT........................2011.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACTGAAGCCTTCCTGCA......2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCTAACTGAAGCCTTCC..........2111.001100000
droBip1
GTTCTTTGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTCGAAATCGACAGCGGCAGCGAGTTGACTGAAGCCTTCCTGCAAGACGASizeHit CountTotal NormTotal
No Reads
dp5
CGCCGTTCCTCGAGCAGCTGGCGGCCCTGGGCGTCGATGTGGTTAAGAAGGTATGTGGAAAGGTC---------T--GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........CTCGAGCAGCTGGCGGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................AAGAAGGTATGTGGAAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
droPer2
CGCCGTTCCTCGAGCAGCTGGCGGCCCTGGGAGTCGATGTGGTTAAGAAGGTATGTGGAAAGGTC---------T--GC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......CCTCGAGCAGCTGGCGGCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........GAGCAGCTGGCGGCCCTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................AGTCGATGTGGTTAAGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
CAAATTATACA-----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT---------------------------------------------------------------------------------------------------------TAAAGCTAG-----------------------------------------------------------------------------------------TTTTGGCTTTTGGGTAT---TAGAAACATCATAACTTATC-----TTTAC-----AT-----TCTTTCAGTTGGAAATTGATAGCGGAAGCGAACTAACCGAAGCCTATTTGCTGGACGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCGAACTAACCGAAGCCT.............2211.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAATTGATAGCGGAAGC.............................2211.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCGGAAGCGAACTAACCGAAGCCT.............2711.00110000
droVir3
TTTGACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT-----TATTTGCCAATATAGCTGGAAATCGACAGCGGCGACGAACTGACCGAGGAGTATCTGCAGGAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGAACTGACCGAGGAGT.............2111.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCGGCGACGAACTGACCGAGG................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCGGCGACGAACTGACCGAGGA...............2911.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAATCGACAGCGGCGACGAACT........................2511.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
TTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATACAGCTGGAAATCGACAGCGGCAACGAACTCACCGAGCAATACCTGCAGGACGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCGGCAACGAACT........................1811.001100000
droGri2
CGCCGTTCATTGAACAGCTCGCGGAGCTGGGTATCAATGTGGACAAGAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAAATCGATGCGGGCG-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:50 AM