ID:

dsi_30771

 Coordinate:

2r:2137606-2137755 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.5 -16.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2r:2096400-2096425 -
  2. dsi_30771  2r:2137607-2137632 -
star
  1. 2r:2096458-2096483 -
  2. dsi_30771  2r:2137665-2137690 -

Sense Strand Reads

CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTATGAAAAAAATTGTTTTTTTTTTTAAACAACAGTGTAATTAGTTAATTTTTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATCGAACATAAAAAACTTGCCGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCA
*******************************************************************************************************************.......((((((.((((...((((...)))))))).......((((((.....((((......))))))))))...)))))).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCAGA........................ 27 0 2 21.00 42 29 8 2 3 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTA................ 26 0 2 18.50 37 2 27 8 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATT................. 25 0 2 18.50 37 5 20 11 0 1 0 0 0 0
.....................................................................................................................................................................................TACTGCATCTATCGAACATAAAAAACT.......................................... 27 0 2 16.50 33 25 0 0 7 0 1 0 0 0
..................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAAAACT.......................................... 30 0 2 7.50 15 14 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TTAGCAGAAGTTATTATAAAATGGGA...... 26 0 2 7.50 15 11 0 0 4 0 0 0 0 0
..............................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGAC................................ 28 0 2 7.50 15 3 11 0 1 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTAT............... 27 0 2 7.00 14 1 13 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATT................. 26 0 2 4.00 8 0 7 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATTA................ 27 0 2 3.00 6 1 4 1 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAT.................. 24 0 2 3.00 6 1 3 2 0 0 0 0 0 0
..............................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGACT............................... 29 0 2 3.00 6 1 5 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACTTAGCAGAAGTTATTATAAAATGGGA...... 28 0 2 2.50 5 5 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAGA........................ 25 0 2 2.50 5 0 3 1 1 0 0 0 0 0
.............................................................................................................................................................................TTTCCTCCTACTGCATCTATCGAACA................................................... 26 0 2 2.50 5 5 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGCATCTATCGAACATAAAAAACT.......................................... 24 0 2 2.00 4 3 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTTA................... 27 0 2 2.00 4 1 2 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGAAGT..................... 26 0 2 2.00 4 0 4 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAGAA....................... 26 0 2 2.00 4 0 4 0 0 0 0 0 0 0
...................................................................................................................................................................................CCTACTGCATCTATCGAACATAAAAAACT.......................................... 29 0 2 2.00 4 4 0 0 0 0 0 0 0 0
...................................................................................................................TTTTCCGGTTCGACATCAACTAGTGC............................................................................................................. 26 0 2 2.00 4 4 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTCCTCCTACTGCATCTATCGAACATA................................................. 27 0 2 2.00 4 3 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGT..................... 25 0 2 2.00 4 0 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTATA.............. 28 0 2 2.00 4 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTGCATCTATCGAACATAAA............................................... 22 0 2 1.50 3 0 3 0 0 0 0 0 0 0
...................................................................................................................................................TGATTAACTATATGCAGCGCCTTGGGT............................................................................ 27 0 2 1.50 3 2 1 0 0 0 0 0 0 0
.............................................................................................................................................................TATGCAGCGCCTTGGGTTTCCTCCTAC.................................................................. 27 0 2 1.50 3 0 2 0 1 0 0 0 0 0
..................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAAA............................................. 27 0 2 1.50 3 2 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TGGGTTTCCTCCTACTGCATCTATCGAACA................................................... 30 0 2 1.50 3 3 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGAACATAAAAAACTTGCCGTGGACTT.............................. 28 0 2 1.00 2 0 1 1 0 0 0 0 0 0
.......................................................................................................................................TAGTGCAGCACTTGATTAACTATA........................................................................................... 24 1 2 1.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGACTTAGCAGAAGTTATTATAAAA........... 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACTGCATCTATCGAACATAAAAAACT.......................................... 26 0 2 1.00 2 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TTCCTCCTACTGCATCTATCGAACA................................................... 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCCGTGGACTTAGCAGAAGTTATTATA.............. 27 0 2 1.00 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATAA................ 26 1 2 1.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACTTGCCGTGGACTTAGCAGAAGTT.................... 25 0 2 1.00 2 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TCCTCCTACTGCATCTATCGAACATAAA............................................... 28 0 2 1.00 2 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTT.................... 22 0 2 1.00 2 0 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGA................................. 27 0 2 1.00 2 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAA.................. 24 1 2 1.00 2 0 2 0 0 0 0 0 0 0
......................TTTGCAGCTCATTATTCGTCATTATAA......................................................................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................TTGATTAACTATATGCAGCGCCTTGGGT............................................................................ 28 0 2 1.00 2 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GACTTAGCAGAAGTTATTATAAAATGGGA...... 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................TGCAGCTTATTATTCGTCATTATA.......................................................................................................................................................................................................... 24 1 2 1.00 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................TACTGCATCTATCGAACATAGAAAACT.......................................... 27 1 2 1.00 2 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGA........................ 23 0 2 1.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CTTAGCAGAAGTTATTATAAAATGGGA...... 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAA.............................................. 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGAACATAAAAAACTTGCCGTGGACT............................... 26 0 2 1.00 2 0 0 1 1 0 0 0 0 0
........................TGCAGCTCATTATTCGTCATTATA.......................................................................................................................................................................................................... 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCAGAA....................... 28 0 2 1.00 2 0 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................TACTGCATCTATCGAACATAAAAAAC........................................... 26 0 2 1.00 2 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGGACTTAGCAGAAGTTATTATAAAA........... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TGGGTTTCCTCCTACTGCATCTATCGAAC.................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTAT.................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................TCGACATCAACTAGTGCAACACT....................................................................................................... 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGT..................... 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................AGCGCCTTGGGTTTCCTCCTACTGCAA............................................................. 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................TTTCCTCCTACTGCATCTATCGAACATAAA............................................... 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTTAA.................. 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGA........................ 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGAT................................ 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTGCATCTATCGTACATAAAAAAACT......................................... 28 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAGCAGAAGTTATTATAAAATGGGAGCT... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................................................................................................TTTTTCGGTTCGACATCAACTAGTGC............................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATAAAAAACTTGCCGTGGACTTAGCAGA........................ 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTGGCAGA........................ 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CATAAAAAACTTGCCGTGGACTTAGC........................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTA................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGAACATAAAAAACTTGGCGTGGACTT.............................. 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAAAAACTTGCCGGGGACTTAGCAGA........................ 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................GAACATAAAAAACTTGCCGTGGACT............................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAAAAACTTGCCGTGGACTTAGCAGAA....................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGCAGCGCCTTGGGTTTCCTCCTAC.................................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCA.......................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAAAAACTAGCCGTGGACTTAGCAGA........................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGAAGTTA................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............TTCATATTTTGCAGCTCATTATTCGTC................................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATAT................ 27 2 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTA.................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTAGCAGAAGTTATTATAAAATGGGT...... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTGCATCCATCGAACATAAAAAACT.......................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAAA................. 25 2 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGAACATAAAAAACTTGCCGTGGACT............................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CATCAACTAGTGCAACACTT...................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TTGATTAACTATATGCAGCGCCTTGGG............................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTGTT................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TTCTCCTACTGCATCTATCGAACA................................................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGT..................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTCCGTGGACTTAGCAGAAGTTATT................. 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TCCGGTTCGACATCAACTAGTGCAGCACT....................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TAAAGTGTATTTTCCGGTTCGACATCAA.................................................................................................................... 28 3 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATA................. 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAA....................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGAAGAAGTTATT................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CTTGATTAACTATATGCAGCGCCTTGGGT............................................................................ 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAG......................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAAAAACTTGCCGTGGACTT.............................. 20 0 2 0.50 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTT................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CTACTGCATCTATCGAACATAAAAAAACT......................................... 29 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGACA............................... 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTT................ 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAAACTTGCCGTGGACTTAGCAGAA....................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGTCGTGGACTTAGCAGAAGTT.................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAA............................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTAA............... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TCTATCGAACATAAAAAACTTGCCGTGG.................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................TATTTTCCGGTTCGACATCAACTAGTGC............................................................................................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGTGCAACACTTGATTAACTATA........................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0
.............................CTCATTATTCGTCATTATAAAG....................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................TCATTATTCGTCATTATAAAGTGTA................................................................................................................................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCCGGTTCGACATCAACTAGTGCAGCACA....................................................................................................... 29 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................TGCATCTATCGAACATAAAAAACTTGC....................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CCTACTGCATCTATCGAACATAAAAA............................................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGGACTTAGCAGAA....................... 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACTGCATCTATCGAAA.................................................... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0
...............TTCATAGTTTGCGGCTCATAA...................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................CAACTAGTCGAACACT....................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................ATCACAGAGTATGAAAAAAA............................................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GATACGTCGTCAATAAAGTATAAAACGTCGAGTAATAAGCAGTAATATTTCATACTTTTTTTAACAAAAAAAAAAATTTGTTGTCACATTAATCAATTAAAAATAACGTCCACATAAAAGGCCAAGCTGTAGTTGATCACGTTGTGAACTAATTGATATACGTCGCGGAACCCAAAGGAGGATGACGTAGATAGCTTGTATTTTTTGAACGGCACCTGAATCGTCTTCAATAATATTTTACCCTCGAAGT
***************************************************.......((((((.((((...((((...)))))))).......((((((.....((((......))))))))))...)))))).******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................................................GAGGATGACGTAGATC......................................................... 16 1 2 0.50 1 0 0 1 0 0
.................................................................................................................................................................................GAGGATGACGTAGATAGCTTGTATTTTT............................................. 28 0 2 0.50 1 0 1 0 0 0
....................................................................AAAAAAAATTTCTTCTCACATT................................................................................................................................................................ 22 2 2 0.50 1 1 0 0 0 0
.....................................................................................................................AAGGCCAAGCTGTAGTTGAT................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0
.................................................................AAAAAAAAAAATTTGTTGTTAGACT................................................................................................................................................................ 25 3 3 0.33 1 1 0 0 0 0
.................................................................AAAAAAAAATATTTGTTGTCAACT................................................................................................................................................................. 24 3 6 0.33 2 2 0 0 0 0
.................................................................AAAAAAAAAAATTTCTTGT...................................................................................................................................................................... 19 1 5 0.20 1 0 0 0 1 0
.....................................................................AAAAAAATTTTTTCTCACATT................................................................................................................................................................ 21 2 7 0.14 1 0 1 0 0 0
........................................................................AAAATTTGTTGTAACAT................................................................................................................................................................. 17 1 7 0.14 1 0 1 0 0 0
.....................................................................................................................CAGGGCAAGCTGTAGTT.................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0
.................................................................AAAAAAAAAAATCTGTTGT...................................................................................................................................................................... 19 1 9 0.11 1 0 0 0 1 0
....................................................................AAAAAAAAATTGTTGGCTCAT................................................................................................................................................................. 21 3 14 0.07 1 1 0 0 0 0
....................................................................AAAAAAAAATTGTTGTC..................................................................................................................................................................... 17 1 16 0.06 1 0 0 1 0 0
..................................................................AAAAAAAAAAATTGTTGT...................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 1 0
.................................................................AAAAAAAAAATTTTGTTGTTATAT................................................................................................................................................................. 24 3 20 0.05 1 1 0 0 0 0
.....................................................................AAAAAAATTTGTTGCCAT................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2137556-2137805 - dsi_30771 CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTATGAAAA---A-A-ATTG--------TTT--TT----T------TT---------TTTAAACAAC--AGT---GTAATTA-----GTTAAT-TTTTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATCGAACATAAAAAACTTGCCGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCA
droSec2 scaffold_59:27691-27939 - CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTATGAAAA---A-A-ATTG----TTTTTTT---T----T-------------------AAAACAAC--AGT---GTAATTA-----GTTAAT-TTTTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATCGAACATAAAAAACTTGCCGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCA
dm3 chr2R:1082560-1082805 - CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTAAGAAAA---A-ATG--------TTTGTT---T----T-------------------AAAACAAC--CGT---GTAATTA-----GTTGAT-TATTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATTGAACATAAAAAACTTGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAACTTCA
droEre2 scaffold_4929:21540920-21541167 + CTATGCAGCAGTTATTCCATATTTTGCAACTCATTATTCGTCATTATAAAGTAAGGACA---A-A-A--------TTTGTTGCAT----T-------------------AAAACAAT--CTT---ATAATAA-----TATAAT-TTTTATTACAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCTTCTATTGAACATAAGAAACTTGCTGTTGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCA
droYak3 v2_chr2L_random_028:1028243-1028485 - CTATGCAGCAGTTGTTCCATATTTTGCAACTCATTATTCGTCATTATAAAGTAAGAACA---A-CAA--------TTTGTA---T----T-------------------ACAACAAT--CTT---TTAA--------TATGAT-TTATATTTCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACCTGATTAACTATATGCAGCGCCTAGGGTTTCCTCCTACTGCATCTATTGAACATAAGAAACTTGCTGTGGACTTAGCAGAAGTTATTATTAAATGGGAGCTTCA
droEug1 scf7180000408745:7618-7863 + CAATGCAACAATTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGAATA---A-G-A--------ATTATA---T-TTTA-------------------TATTTAA-----TA--TACAT---ATATTACAA---TTATTTGCAGGTGTATTTTCCTGTAAGACATCAATTAGTCCAGCACTTGATTAATTACATGCAGCGCTTAGGCTTTCCCCCCACTGCATCCATTGAGCATAAGAAACTAGCAGTGGACTTAGCAGAAGTTATCATAAAATGGGAGCTTCA
droBia1 scf7180000301504:80751-80998 - CAATGCAGCAGTTATTCCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGAATA---A-T-TTA--------ATTTTTTC----T-------------------TTAACTTC--ATG---TTTTGTA-----TGGGAT-TTATATTTTAGGTATATTTTCCTGTTAGACATCAATTAGTGCAACACTTGATTAATTATATGCAGCGCCTGGGATTTCCTCCTACAGCATCCATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCA
droTak1 scf7180000415828:21382-21633 - CAATGCAGCAGTTGTTCCATATTTTGCAACTTATAATTCGACATTATAAAGTAAGAATA---C-C-ATT--------TATTATTC----------------------TTGAATTAAA--AGT---TTAGTTT-TTA-TGTGAT-TTATATTTTAGGTGTATTTCCCTGTTAGACATCAACTAGTGCAACACTTGATAAATTATATGCAGCGCCTAGGATTTCCTCCTACCGCATCTATTGAACATAAGAAGCTCGCTGTGGACTTAGCTGAAGTTATTATTAAATGGGAGCTTCA
droEle1 scf7180000490506:1315-1473 + TAATT---------------------------------------------------------------------------------------------------------------------------------------TAT-TTATTTTGTAGGTATATTTTCCTGTAAGGCATCAACTAGTGCAACACTTAATAAATTATATGCAGCGCTTAGGATTTCCTCCTACTGCGTCTATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTAATTATAAAATGGGAGCTTCA
droRho1 scf7180000776582:4656-4904 - CAATGCAACAGCTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGTACC---A-A-TTTA----AATTGTA---A----T-------------------GATTCAAT--CTT---TTAATTT-----TTTGAA-CTATTTTGTAGGTGTATTTTCCTGTTAGGCATCAACTAGTGCAACACTTGATAAATTATATGCAACGCTTAGGATTTCCGCCTACTGCATCTATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTGCA
droFic1 scf7180000453609:23612-23857 - CAATGCAGCAATTGTTTCATATATTACAACTTATAATTCGTCATTATAAAGTAAGAAAA---A-T-AT-------TTTTTT---A----T-------------------GTACCATA--CTT---GTATTTA-----TAAGAT-TTGTTTTACAGGTATATTTTCCTGTTAGGCATCAACTGGTGCAGCACTTAATTAATTATATGCAGCGCTTGGGTTTTCCTCCTACTGCATCTATCGAACATAAAAAATTAGCTGTGGATCTAGCTGAAGTTATAATAAAATGGGAGCTTCA
droKik1 scf7180000301583:31053-31297 - CTATGCAGCAGTTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGTATA---T-T-G--------TTTGTT---T-CGCAGTCAAG------------------------TA---TTAATTG-----TTTAAT-TTACATTATAGGTCTACTTTCCTGTTAGACATCAACTTGTGCAACATTTAATTAACTATATGCAGCGCCTGGGATTTCCTCCAACTGCATCTATTGAACATAAAAAACTAGCTGTCGACTTGGCAGAAGTTATTATTAAATGGGAGCTACA
droAna3 scaffold_13266:19770609-19770854 - CCATGCAACAATTATTTCATATTCTGCAACTTATAATACGTCATTATAAAGTAGGTGTT---A-G-G--------TTTTTC---T-TGCT-------------------ATAACAA-----TA--TTAATAG-----CCTTAA-TTTATTTGTAGGTATATTTTCCTGTCAGACATCAACTGGTGCAACATTTGATTAATTATATGCAGCGCTTAGGATTCCCTCCGACAGCTTCTATTGAACATAAAAAGTTAGCTGTGGACTTAGCCGAGGTAATAATCAAGTGGGAACTTCA
droBip1 scf7180000394793:8903-9155 - CCATGCAACAATTATTTCACATTTTGCAACTTATAATTCGTCATTATAAAGTAAGAATC---A-A-G---------TTTTTGCTT------AAAA----------------ATTAATAATTT---ATAAT---AAATTATAATTTTACTTTGTAGGTTTATTTTCCGGTCAGACATCAACTTGTGCAGCATTTGATTAATTATATGCAACGCTTAGGATTTCCTCCTACTGCATCTATTGAACATAAAAAATTAGCTGTGGACTTAGCCGAAGTAATAATAAAGTGGGAACTTCA
dp5 Unknown_group_6:62146-62394 - CAATGCAACAGCTTTTTCATATTTTACAACTAATAATTCGACACTATAAGGTAAGTCTA----------------TTTGTTGTAC------ACATGTATATAAAAAT---------------ATTT-G---AT----AAACGC-TTATATTTTAGGTTTATTTTCCTGTTAGACACCAGCTAGTGCAGCACTTGATTAATTATATGCAACGGCTTGGATTCCCCGCAACTGCGTCTATTGAACATAAAAAGCTAGCTGTTGATTTAGCAGAAGTTATTATCAAATGGGAACTGCA
droPer2 scaffold_43:232595-232843 - CAATGCAACAGCTTTTTCATATTTTACAACTAATAATTCGACACTATAAGGTAAGTCTA----------------TTTGTTGTAC------ACATGTATATAAAAAT---------------ATTT-G---AT----AAACGC-TTATATTTTAGGTTTATTTTCCTGTTAGACACCAACTAGTGCAGCACTTGATTAATTATATGCAACGGCTTGGATTCCCCGCAACTGCGTCTATTGAACATAAAAAGCTAGCTGTTGATTTAGCAGAAGTTATTATCAAATGGGAACTGCA
droWil2 scf2_1100000004513:5128528-5128780 + dwi_928 CAATGCAACAATTGTTCCACATCCTGCAACTTATAATCAGGCACTACAAGGTATGTTAA---T-C-ATATGTCA----TTT--TAA----------CC---------TTGAATTCAC--TCT---ATTATCT-----TTTCTT-CT-TTATTTAGGTGTATTTCCCCGTAAGACATCAATTGGTCCAGCATCTGATCAATTATATGCAGCGTCTTGGATTTCCGCCAACGGCTTCCATTGAGCATAAAAAATTAGCTGTGGACTTGGCTGAAGTTATTATTAAATGGGAATTACA
droVir3 scaffold_12875:12078125-12078373 - CAATACAACAGCTGTTTCATATCCTTCAACTGATTATACGTCATTATAAGGTAAGCCA-TTACAGAA----TTTAACTGTGGCGT------AAATAAATTT--------------------------A---A-----CCTTAT-TTAATCTATAGGTTTATTTCCCCGTCAGACATCAGTTGGTGCAGCATCTTATACACAATATGCAACGATTGGGATTTCCTCCAAGTGCGTCTATTGAACATAAAAAGTTGGCTGTCGACTTGGCAGAAGTTATAATTAAATGGGAACTGCA
droMoj3 scaffold_6496:14740755-14741006 + CAATACAACAGCTCTTCCACATCCTGCAGCTAATTATTCGTCACTACAAAGTATTCAC-TCACAGAG----TTT----AATATAAT----------TGCGTAAATTG---------------ATTA-A---AT----ATTAAC-TTTAATTCTAGGTTTACTTCCCCGTAAGACATCAATTGGTGCAGCATCTCATAAATTATATGCAGCGCTTAGGATTTCCGCCAAACGCTTCTATTGAGCATAAGAAATTGGCTGTGGACTTGGCAGAAGTTATCATAAAATGGGAGCTGCA
droGri2 scaffold_15245:11950079-11950329 - CGATACAGCAGCTGTTCCACATTCTTCAGCTGATTATTCGTCATTATAAGGTTAGTGCAATAAGGAG----TCT----TAT--AAT----------TG---------CCAAATTGA-----------CAC---TAATCGCAAT-CCAATCCTTAGGTTTATTTCCCTGTCAGACACCAGTTGGTGCAGCATCTTATTAACTATATGCAACGTTTGGGATTTCCGCCAAGTGCTTCTATTGAACATAAAAAATTGGCTGTGGATTTAGCGGAAGTTATAATCAAATGGGAACTACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTATGAAAA---A-A-ATTG--------TTT--TT----T------TT---------TTTAAACAAC--AGT---GTAATTA-----GTTAAT-TTTTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATCGAACATAAAAAACTTGCCGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCAGA........................27221.0042000000293000028000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTA................26218.5037000000200000827000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATT.................25218.50370000005000101120000
..................................................................................................................................................................................................................................TACTGCATCTATCGAACATAAAAAACT..........................................27216.5033000000257100000000
...............................................................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAAAACT..........................................3027.5015000000141000000000
.......................................................................................................................................................................................................................................................................TTAGCAGAAGTTATTATAAAATGGGA......2627.5015000000114000000000
...........................................................................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGAC................................2827.5015000000310000011000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTAT...............2727.0014000000100000013000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATT.................2624.00800000000000017000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATTA................2723.00600000010000014000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAT..................2423.00600000010000023000
...........................................................................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGACT...............................2923.00600000010000005000
.....................................................................................................................................................................................................................................................................ACTTAGCAGAAGTTATTATAAAATGGGA......2822.50500000050000000000
......................................................................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAGA........................2522.50500000001000013000
..........................................................................................................................................................................................................................TTTCCTCCTACTGCATCTATCGAACA...................................................2622.50500000050000000000
.....................................................................................................................................................................................................................................TGCATCTATCGAACATAAAAAACT..........................................2422.00400000031000000000
.........................................................................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTTA...................2722.00400000011000002000
........................................................................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGAAGT.....................2622.00400000000000004000
......................................................................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAGAA.......................2622.00400000000000004000
................................................................................................................................................................................................................................CCTACTGCATCTATCGAACATAAAAAACT..........................................2922.00400000040000000000
................................................................................................................................................................TTTTCCGGTTCGACATCAACTAGTGC.............................................................................................................2622.00400000040000000000
...........................................................................................................................................................................................................................TTCCTCCTACTGCATCTATCGAACATA.................................................2722.00400000031000000000
.........................................................................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGT.....................2522.00400000000000022000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTATA..............2822.00400000020000002000
..................................................................................................................................................................................................................................TACTGCATCTATCGAACATAAA...............................................2221.50300000000000003000
................................................................................................................................................................................................TGATTAACTATATGCAGCGCCTTGGGT............................................................................2721.50300000020000001000
..........................................................................................................................................................................................................TATGCAGCGCCTTGGGTTTCCTCCTAC..................................................................2721.50300000001000002000
...............................................................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAAA.............................................2721.50300000021000000000
......................................................................................................................................................................................................................TGGGTTTCCTCCTACTGCATCTATCGAACA...................................................3021.50300000030000000000
.............................................................................................................................................................................................................................................TCGAACATAAAAAACTTGCCGTGGACTT..............................2821.00200000000000011000
..................................................................................................................................................................................................................................................................TGGACTTAGCAGAAGTTATTATAAAA...........2621.00200000020000000000
...................................................................................................................................................................................................................................ACTGCATCTATCGAACATAAAAAACT..........................................2621.00200000011000000000
...........................................................................................................................................................................................................................TTCCTCCTACTGCATCTATCGAACA...................................................2521.00200000020000000000
..............................................................................................................................................................................................................................................................GCCGTGGACTTAGCAGAAGTTATTATA..............2721.00200000000000002000
..........................................................................................................................................................................................................................................................ACTTGCCGTGGACTTAGCAGAAGTT....................2521.00200000000000011000
............................................................................................................................................................................................................................TCCTCCTACTGCATCTATCGAACATAAA...............................................2821.00200000000000002000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTT....................2221.00200000000000011000
...........................................................................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGA.................................2721.00200000010000001000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAA..................2421.00200000000000002000
......................TTTGCAGCTCATTATTCGTCATTATAA......................................................................................................................................................................................................................................................2721.00200000020000000000
...............................................................................................................................................................................................TTGATTAACTATATGCAGCGCCTTGGGT............................................................................2821.00200000011000000000
....................................................................................................................................................................................................................................................................GACTTAGCAGAAGTTATTATAAAATGGGA......2921.00200000020000000000
........................................................................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGA........................2321.00200000011000000000
......................................................................................................................................................................................................................................................................CTTAGCAGAAGTTATTATAAAATGGGA......2721.00200000020000000000
...............................................................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAAA..............................................2621.00200000020000000000
..............................................................................................................................................................................................................................................CGAACATAAAAAACTTGCCGTGGACT...............................2621.00200000001000010000
........................TGCAGCTCATTATTCGTCATTATA.......................................................................................................................................................................................................................................................2421.00200000020000000000
....................................................................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCAGAA.......................2821.00200000000000011000
..................................................................................................................................................................................................................................TACTGCATCTATCGAACATAAAAAAC...........................................2621.00200000010000001000
.................................................................................................................................................................................................................................................................GTGGACTTAGCAGAAGTTATTATAAAA...........2720.50100000000000001000
......................................................................................................................................................................................................................TGGGTTTCCTCCTACTGCATCTATCGAAC....................................................2920.50100000010000000000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTAT..................2520.50100000000000010000
.........................................................................................................................................................................TCGACATCAACTAGTGCAACACT.......................................................................................................2320.50100000001000000000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGT.....................2220.50100000000000001000
...............................................................................................................................................................................................................AGCGCCTTGGGTTTCCTCCTACTGCAA.............................................................2720.50100000000001000000
..........................................................................................................................................................................................................................TTTCCTCCTACTGCATCTATCGAACATAAA...............................................3020.50100000000000001000
.........................................................................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTTAA..................2820.50100000000000001000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGA........................1820.50100000000001000000
...........................................................................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGAT................................2820.50100000000000001000
........................................................................................................................................................................................................................................................................TAGCAGAAGTTATTATAAAATGGGAGCT...2820.50100000000000001000
...................................................................................................................................................................................................................................................ATAAAAAACTTGCCGTGGACTTAGCAGA........................2820.50100000010000000000
..................................................................................................................................................................................................................................................CATAAAAAACTTGCCGTGGACTTAGC...........................2620.50100000010000000000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTA...................2320.50100000000000001000
...............................................................................................................................................................................................................................................GAACATAAAAAACTTGCCGTGGACT...............................2520.50100000010000000000
.....................................................................................................................................................................................................................................................AAAAAACTTGCCGTGGACTTAGCAGAA.......................2720.50100000000000010000
............................................................................................................................................................................................................TGCAGCGCCTTGGGTTTCCTCCTAC..................................................................2520.50100000000000001000
....................................................................................................................................................................................................................................................TAAAAAACTTGCCGTGGACTTAGCA..........................2520.50100000010000000000
........................................................................................................................................................................................................................................................AAACTTGCCGTGGACTTAGCAGAAGTTA...................2820.50100000010000000000
...............TTCATATTTTGCAGCTCATTATTCGTC.............................................................................................................................................................................................................................................................2720.50100000010000000000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTATAT................2720.50100000000000001000
.........................................................................................................................................................................................................................................................AACTTGCCGTGGACTTAGCAGAAGTA....................2620.50100000000000001000
.......................................................................................................................................................................................................................................................................TTAGCAGAAGTTATTATAAAATGGGT......2620.50100000010000000000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTAAA.................2520.50100000000000001000
.............................................................................................................................................................................................................................................TCGAACATAAAAAACTTGCCGTGGACT...............................2720.50100000000000010000
.............................................................................................................................................................................CATCAACTAGTGCAACACTT......................................................................................................2020.50100010000000000000
...............................................................................................................................................................................................TTGATTAACTATATGCAGCGCCTTGGG.............................................................................2720.50100000010000000000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGT.....................2120.50100000000000001000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATA.................2520.50100000000000001000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAA.......................2020.50100010000000000000
..............................................................................................................................................................................................CTTGATTAACTATATGCAGCGCCTTGGGT............................................................................2920.50100000010000000000
......................................................................................................................................................................................................................................................AAAAACTTGCCGTGGACTTAGCAG.........................2420.50100000010000000000
.....................................................................................................................................................................................................................................................AAAAAACTTGCCGTGGACTT..............................2020.50101000000000000000
............................................................................................................................................................................................................................................................TTGCCGTGGACTTAGCAGAAGTTT...................2420.50100000000000001000
...........................................................................................................................................................................................................................................TATCGAACATAAAAAACTTGCCGTGGACA...............................2920.50100000000000001000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTT................2620.50100000000000001000
.......................................................................................................................................................................................................................................................AAAACTTGCCGTGGACTTAGCAGAA.......................2520.50100000000000001000
...............................................................................................................................................................................................................................TCCTACTGCATCTATCGAACATAAA...............................................2520.50100000000000001000
.............................................................................................................................................................................................................................................................TGCCGTGGACTTAGCAGAAGTTATTAA...............2720.50100000000000001000
.........................................................................................................................................................................................................................................TCTATCGAACATAAAAAACTTGCCGTGG..................................2820.50100000010000000000
..............................................................................................................................................................TATTTTCCGGTTCGACATCAACTAGTGC.............................................................................................................2820.50100000010000000000
....................................................................................................................................................................................TAGTGCAACACTTGATTAACTATA...........................................................................................2420.50100000000100000000
.............................CTCATTATTCGTCATTATAAAG....................................................................................................................................................................................................................................................2220.50100000010000000000
.....................................................................................................................................................................................................................................TGCATCTATCGAACATAAAAAACTTGC.......................................2720.50100000010000000000
................................................................................................................................................................................................................................CCTACTGCATCTATCGAACATAAAAA.............................................2620.50100000000000001000
.................................................................................................................................................................................................................................................................GTGGACTTAGCAGAA.......................1530.33100000010000000000
...................................................................................................................................................................................................................................ACTGCATCTATCGAAA....................................................1660.17100000001000000000
droSec2
CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTATGAAAA---A-A-ATTG----TTTTTTT---T----T-------------------AAAACAAC--AGT---GTAATTA-----GTTAAT-TTTTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATCGAACATAAAAAACTTGCCGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................CCGGTTCGACATCAACTAGTGCAACACT.......................................................................................................2811.0011000
.......................................................................................................................................................................GTTCGACATCAACTAGTGCAA...........................................................................................................2111.0011000
dm3
CTATGCAGCAGTTATTTCATATTTTGCAGCTCATTATTCGTCATTATAAAGTAAGAAAA---A-ATG--------TTTGTT---T----T-------------------AAAACAAC--CGT---GTAATTA-----GTTGAT-TATTATTGCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCATCTATTGAACATAAAAAACTTGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAACTTCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................TATATGCAGCGCCTTGGGTTTCCTCC.....................................................................26168.0068000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000008000011000100000000000291352200000
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...................................................................................................................................................................................................TTAACTATATGCAGCGCCTTGG..............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................TCGACATCAACTAGTGCAACAC........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AACACTTGATTAACTATATGCAGCG....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AAAACTTGCTGTGGACTTAGCAGA........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AACTATATGCAGCGCCTTGGGTT...........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................TCCTCCTACTGCATCTATTGAACA...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAGTTATTTCATATTTTGCAGCTCATTA...................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAAAAAACTTGCTGTGGAC................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGCAGCGCCTTGGGTTTCC........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................CACTTGATTAACTATATGCAGCGCCTT................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................AGCAGAAGTTATTATAAAATGGGA......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................GCTGTGGACTTAGCAGAAGTTATTATA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AAAAACTTGCTGTGGACTT..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTGAACATAAAAAACTTGCTGTGGACT...............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCATATTTTGCAGCTCATTATTCG...............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TAACTATATGCAGCGCCTT................................................................................1911.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTAACTATATGCAGCGCCTTGGGTTTCCT.......................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................TTAACTATATGCAGCGCCTTGGGTTTC.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................TCCTCCTACTGCATCTATTGAACATAA................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TGCTGTGGACTTAGCAGAAG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GGTTTCCTCCTACTGCATCTATC........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATTTTGCAGCTCATTATTCGTCATTAT........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................TAACTATATGCAGCGCCTTGGGTTTC.........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................TAACTATATGCAGCGCCTTGGGTTA..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ACTTGATTAACTATATGCAGCGCCTTG...............................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGAAGTTATTATAAAATGGGAACT...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
CTATGCAGCAGTTATTCCATATTTTGCAACTCATTATTCGTCATTATAAAGTAAGGACA---A-A-A--------TTTGTTGCAT----T-------------------AAAACAAT--CTT---ATAATAA-----TATAAT-TTTTATTACAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACTTGATTAACTATATGCAGCGCCTTGGGTTTCCTCCTACTGCTTCTATTGAACATAAGAAACTTGCTGTTGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................TTAACTATATGCAGCGCCTTGGGT............................................................................24115.001500000015
....................................................................................................................................................................................................TAACTATATGCAGCGCCTTGGGTT...........................................................................2418.0080000008
................................................................................................................................................................................................TGATTAACTATATGCAGCGCCTTGGGTT...........................................................................2813.0030000003
.................................................................................................................................................................TTTCCGGTTCGACATCAACTAGTGCAA...........................................................................................................2711.0011000000
...............................................................................................................................................................................................................................................GAACATAAGAAACTTGCTGT....................................2011.0011000000
..........................................................................................................................................................................................................................................................ACTTGCTGTTGACTTAGC...........................1811.0011000000
.......................................................................................................................................................................................................CTATATGCAGCGCCTTGGGT............................................................................2011.0010000010
.........................................................................................................................................................................................................ATATGCAGCGCCTTGGGTTTCCT.......................................................................2311.0010000100
....................................................................................................................................................................................TAGTGCAACACTTGATTAACTATATGC........................................................................................2711.0011000000
.....................................................................................................................................................................................................................................TGCTTCTATTGAACATAAGAAACTTG........................................2611.0011000000
droYak3
CTATGCAGCAGTTGTTCCATATTTTGCAACTCATTATTCGTCATTATAAAGTAAGAACA---A-CAA--------TTTGTA---T----T-------------------ACAACAAT--CTT---TTAA--------TATGAT-TTATATTTCAGGTGTATTTTCCGGTTCGACATCAACTAGTGCAACACCTGATTAACTATATGCAGCGCCTAGGGTTTCCTCCTACTGCATCTATTGAACATAAGAAACTTGCTGTGGACTTAGCAGAAGTTATTATTAAATGGGAGCTTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................TAGGGTTTCCTCCTACTGCATCTATT........................................................2611.00101000000000
......................TTTGCAACTCATTATTCGTCATTATAAA.....................................................................................................................................................................................................................................................2811.00101000000000
droEug1
CAATGCAACAATTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGAATA---A-G-A--------ATTATA---T-TTTA-------------------TATTTAA-----TA--TACAT---ATATTACAA---TTATTTGCAGGTGTATTTTCCTGTAAGACATCAATTAGTCCAGCACTTGATTAATTACATGCAGCGCTTAGGCTTTCCCCCCACTGCATCCATTGAGCATAAGAAACTAGCAGTGGACTTAGCAGAAGTTATCATAAAATGGGAGCTTCASizeHit CountTotal NormTotal
No Reads
droBia1
CAATGCAGCAGTTATTCCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGAATA---A-T-TTA--------ATTTTTTC----T-------------------TTAACTTC--ATG---TTTTGTA-----TGGGAT-TTATATTTTAGGTATATTTTCCTGTTAGACATCAATTAGTGCAACACTTGATTAATTATATGCAGCGCCTGGGATTTCCTCCTACAGCATCCATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTTCASizeHit CountTotal NormTotal
No Reads
droTak1
CAATGCAGCAGTTGTTCCATATTTTGCAACTTATAATTCGACATTATAAAGTAAGAATA---C-C-ATT--------TATTATTC----------------------TTGAATTAAA--AGT---TTAGTTT-TTA-TGTGAT-TTATATTTTAGGTGTATTTCCCTGTTAGACATCAACTAGTGCAACACTTGATAAATTATATGCAGCGCCTAGGATTTCCTCCTACCGCATCTATTGAACATAAGAAGCTCGCTGTGGACTTAGCTGAAGTTATTATTAAATGGGAGCTTCASizeHit CountTotal NormTotal
No Reads
droEle1
TAATT---------------------------------------------------------------------------------------------------------------------------------------TAT-TTATTTTGTAGGTATATTTTCCTGTAAGGCATCAACTAGTGCAACACTTAATAAATTATATGCAGCGCTTAGGATTTCCTCCTACTGCGTCTATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTAATTATAAAATGGGAGCTTCASizeHit CountTotal NormTotal
No Reads
droRho1
CAATGCAACAGCTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGTACC---A-A-TTTA----AATTGTA---A----T-------------------GATTCAAT--CTT---TTAATTT-----TTTGAA-CTATTTTGTAGGTGTATTTTCCTGTTAGGCATCAACTAGTGCAACACTTGATAAATTATATGCAACGCTTAGGATTTCCGCCTACTGCATCTATTGAACATAAGAAACTAGCTGTGGACTTAGCAGAAGTTATTATAAAATGGGAGCTGCASizeHit CountTotal NormTotal
No Reads
droFic1
CAATGCAGCAATTGTTTCATATATTACAACTTATAATTCGTCATTATAAAGTAAGAAAA---A-T-AT-------TTTTTT---A----T-------------------GTACCATA--CTT---GTATTTA-----TAAGAT-TTGTTTTACAGGTATATTTTCCTGTTAGGCATCAACTGGTGCAGCACTTAATTAATTATATGCAGCGCTTGGGTTTTCCTCCTACTGCATCTATCGAACATAAAAAATTAGCTGTGGATCTAGCTGAAGTTATAATAAAATGGGAGCTTCASizeHit CountTotal NormTotal
No Reads
droKik1
CTATGCAGCAGTTGTTTCATATTTTACAACTTATAATTCGTCATTATAAAGTAAGTATA---T-T-G--------TTTGTT---T-CGCAGTCAAG------------------------TA---TTAATTG-----TTTAAT-TTACATTATAGGTCTACTTTCCTGTTAGACATCAACTTGTGCAACATTTAATTAACTATATGCAGCGCCTGGGATTTCCTCCAACTGCATCTATTGAACATAAAAAACTAGCTGTCGACTTGGCAGAAGTTATTATTAAATGGGAGCTACASizeHit CountTotal NormTotal
No Reads
droAna3
CCATGCAACAATTATTTCATATTCTGCAACTTATAATACGTCATTATAAAGTAGGTGTT---A-G-G--------TTTTTC---T-TGCT-------------------ATAACAA-----TA--TTAATAG-----CCTTAA-TTTATTTGTAGGTATATTTTCCTGTCAGACATCAACTGGTGCAACATTTGATTAATTATATGCAGCGCTTAGGATTCCCTCCGACAGCTTCTATTGAACATAAAAAGTTAGCTGTGGACTTAGCCGAGGTAATAATCAAGTGGGAACTTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................TATATGCAGCGCTTAGGATTCCCTCCGAC..................................................................2911.001100000
..........................................................................................................................................................................................................................................................GTTAGCTGTGGACTTAGC...........................1811.001010000
............................................................................................................................................................................................................................CCCTCCGACAGCTTCTATTGAACATAA................................................2711.001100000
droBip1
CCATGCAACAATTATTTCACATTTTGCAACTTATAATTCGTCATTATAAAGTAAGAATC---A-A-G---------TTTTTGCTT------AAAA----------------ATTAATAATTT---ATAAT---AAATTATAATTTTACTTTGTAGGTTTATTTTCCGGTCAGACATCAACTTGTGCAGCATTTGATTAATTATATGCAACGCTTAGGATTTCCTCCTACTGCATCTATTGAACATAAAAAATTAGCTGTGGACTTAGCCGAAGTAATAATAAAGTGGGAACTTCASizeHit CountTotal NormTotal
No Reads
dp5
CAATGCAACAGCTTTTTCATATTTTACAACTAATAATTCGACACTATAAGGTAAGTCTA----------------TTTGTTGTAC------ACATGTATATAAAAAT---------------ATTT-G---AT----AAACGC-TTATATTTTAGGTTTATTTTCCTGTTAGACACCAGCTAGTGCAGCACTTGATTAATTATATGCAACGGCTTGGATTCCCCGCAACTGCGTCTATTGAACATAAAAAGCTAGCTGTTGATTTAGCAGAAGTTATTATCAAATGGGAACTGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................TTTACAACTAATAATTCGACACTA.........................................................................................................................................................................................................................................................2411.0010010000000
...................................................................................................................................................................................................................................................................TGATTTAGCAGAAGTTATT.................1911.0010000100000
droPer2
CAATGCAACAGCTTTTTCATATTTTACAACTAATAATTCGACACTATAAGGTAAGTCTA----------------TTTGTTGTAC------ACATGTATATAAAAAT---------------ATTT-G---AT----AAACGC-TTATATTTTAGGTTTATTTTCCTGTTAGACACCAACTAGTGCAGCACTTGATTAATTATATGCAACGGCTTGGATTCCCCGCAACTGCGTCTATTGAACATAAAAAGCTAGCTGTTGATTTAGCAGAAGTTATTATCAAATGGGAACTGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................ATTTTCCTGTTAGACACCAACTAGTGC.............................................................................................................2712.002200000
.............................................................................................................................................................TTATTTTCCTGTTAGACACCAACT..................................................................................................................2411.001100000
...............................................................................................................................................................ATTTTCCTGTTAGACACCAACT..................................................................................................................2211.001100000
...................TATTTTACAACTAATAATTCGACACT..........................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................TTATTTTCCTGTTAGACAC.......................................................................................................................1911.001100000
droWil2
CAATGCAACAATTGTTCCACATCCTGCAACTTATAATCAGGCACTACAAGGTATGTTAA---T-C-ATATGTCA----TTT--TAA----------CC---------TTGAATTCAC--TCT---ATTATCT-----TTTCTT-CT-TTATTTAGGTGTATTTCCCCGTAAGACATCAATTGGTCCAGCATCTGATCAATTATATGCAGCGTCTTGGATTTCCGCCAACGGCTTCCATTGAGCATAAAAAATTAGCTGTGGACTTGGCTGAAGTTATTATTAAATGGGAATTACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................ATGCAGCGTCTTGGATTTCCGCC.....................................................................2311.00100010
..............................................................................................................................................................TATTTCCCCGTAAGACATCAATTGGTCC.............................................................................................................2811.00101000
.........................................................................................................................................................................................................ATATGCAGCGTCTTGGATTTCCGCCAAC..................................................................2811.00100100
..........................................................................................................................................................................................................................................................ATTAGCTGTGGACTTGGCTGAA.......................2211.00100010
........CAATTGTTCCACATCCTGCAACTTAT.....................................................................................................................................................................................................................................................................2611.00101000
....................................................................................................................................................................................................CAATTATATGCAGCGTCTTGG..............................................................................2111.00101000
droVir3
CAATACAACAGCTGTTTCATATCCTTCAACTGATTATACGTCATTATAAGGTAAGCCA-TTACAGAA----TTTAACTGTGGCGT------AAATAAATTT--------------------------A---A-----CCTTAT-TTAATCTATAGGTTTATTTCCCCGTCAGACATCAGTTGGTGCAGCATCTTATACACAATATGCAACGATTGGGATTTCCTCCAAGTGCGTCTATTGAACATAAAAAGTTGGCTGTCGACTTGGCAGAAGTTATAATTAAATGGGAACTGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................TGGGATTTCCTCCAAGTGCGTCTATTGA......................................................2817.007002000100000000000000000022000000000000000000000000000000000000
............................................................................................................................................................................................................TGCAACGATTGGGATTTCCTCCAAGT.................................................................2614.004000000000000000000000001000000000000002000000000000000000000001
.....................................................................................................................................................................................................................................TGCGTCTATTGAACATAAAAAGTTGGC.......................................2714.004000000000000000000000000001110000000000100000000000000000000000
...TACAACAGCTGTTTCATATCCTTCAAC.........................................................................................................................................................................................................................................................................2713.003000000000000000000000000011000000010000000000000000000000000000
............................................................................................................................................................................................................TGCAACGATTGGGATTTCCTCCAAGTGC...............................................................2813.003000000000000000000000000020000010000000000000000000000000000000
........................TTCAACTGATTATACGTCATTATAAGGT...................................................................................................................................................................................................................................................2813.003000000000000000000000000002010000000000000000000000000000000000
.............................................................................................................................................................TTATTTCCCCGTCAGACATCAGTTGG................................................................................................................2613.003003000000000000000000000000000000000000000000000000000000000000
................TCATATCCTTCAACTGATTATACGTCA............................................................................................................................................................................................................................................................2713.003001000000000000000000000010000000000001000000000000000000000000
..........................................................................................................................................................................................................TATGCAACGATTGGGATTTCCTCCAAGT.................................................................2812.002000000000000000000000000000001000000001000000000000000000000000
...............................................................................................................................................................................................CTTATACACAATATGCAACGATTGGGA.............................................................................2712.002000000000000000000000000010100000000000000000000000000000000000
..................................................................................................................................................................TCCCCGTCAGACATCAGTTGGTGCAGCA.........................................................................................................2812.002000010000000000000000000000100000000000000000000000000000000000
................TCATATCCTTCAACTGATTATACGTCAT...........................................................................................................................................................................................................................................................2812.002001000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TGGCAGAAGTTATAATTAAATGGGAAC....2712.002000000000000000000000000002000000000000000000000000000000000000
....................................................................................................................................................................................................................TTGGGATTTCCTCCAAGTGCGTCTA..........................................................2512.002001010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TCTTATACACAATATGCAACGATTGGGA.............................................................................2812.002000000000000000000000000002000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGAACATAAAAAGTTGGCTGTCGACTTG.............................2811.001001000000000000000000000000000000000000000000000000000000000000
................TCATATCCTTCAACTGATTATACGTC.............................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................TGCAACGATTGGGATTTCCTCCAAG..................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGAAGTTATAATTAAATGGGAACT...2511.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................CAGACATCAGTTGGTGCAGCATCTTA....................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCCCGTCAGACATCAGTTGGTGC.............................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
.............................................................................TGTGGCGT------AAATAAATTT--------------------------A---....................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................GACATCAGTTGGTGCAGCATCTTATACA................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................AAGTGCGTCTATTGAACATAAAAAGTT..........................................2711.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GGTTTATTTCCCCGTCAGACATCAGT...................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACACAATATGCAACGATTG................................................................................1911.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AAAGTTGGCTGTCGACTTGGC...........................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TATTTCCCCGTCAGACATCAGTTGG................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TTGGGATTTCCTCCAAGT.................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AAAGTTGGCTGTCGACTTGGCG..........................2211.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTTATTTCCCCGTCAGACATCAGT...................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................TTCAACTGATTATACGTCATTATAAGG....................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TATGCAACGATTGGGATTTCCTCCAAG..................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TACACAATATGCAACGATTGGGATTTCC........................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
..................ATATCCTTCAACTGATTATACGTCAT...........................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAAAAAGTTGGCTGTCGACTTGGCAG.........................2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................TCAGACATCAGTTGGTGCAGCATC.......................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................TTCCCCGTCAGACATCAGTTGGTGCAGCA.........................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TGGGATTTCCTCCAAGTGCGTCTAT.........................................................2511.001000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................TATTTCCCCGTCAGACATCAGTTGGTG..............................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................TTGGCTGTCGACTTGGCAGA........................2011.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TCAGACATCAGTTGGTGCAGCATCT......................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AAAGTTGGCTGTCGACTTGGCAGAA.......................2511.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................TTTATTTCCCCGTCAGACATCAGTTGG................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................CAGACATCAGTTGGTGCAGCATCTTAT...................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................TTTCCCCGTCAGACATCAGTTGGA...............................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTGGCAGAAGTTATAATTAAATGGGAAC....2811.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................CCCCGTCAGACATCAGTTGGTGCAGC..........................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
...............TTCATATCCTTCAACTGATTATACGTCAT...........................................................................................................................................................................................................................................................2911.001000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................ACACAATATGCAACGATTGGGATTTCC........................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................TCCCCGTCAGACATCAGTTGGTGCA............................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................TTTCCCCGTCAGACATCAGTTGGTG..............................................................................................................2511.001000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGAAGTTATAATTAAATGGGAACTGC.2711.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................TGGGATTTCCTCCAAGTGCGT.............................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GAACATAAAAAGTTGGCTGTCGACT...............................2511.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................CAAGTGCGTCTATTGAACATAAA...............................................2311.001000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................TTTCCTCCAAGTGCGTCTATTGAACA...................................................2611.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................CCCCGTCAGACATCAGTTGGTGCAGCA.........................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TCCAAGTGCGTCTATTGAACATAAAAAG............................................2811.001000000000000000000000000000000000000001000000000000000000000000
..ATACAACAGCTGTTTCATATC................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................AAAAGTTGGCTGTCGACTTGG............................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TGGCTGTCGACTTGGCAGAAGTTATAAA...............2811.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................TGGCTGTCGACTTGGCAGAAGTTATAAT...............2811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TGGCTGTCGACTTGGCAGAAGTTA...................2411.001000000000000000000000000000000000000001000000000000000000000000
..................................TATACGTCATTATAAGGTTT.................................................................................................................................................................................................................................................2020.501000000000000000000000001000000000000000000000000000000000000000
droMoj3
CAATACAACAGCTCTTCCACATCCTGCAGCTAATTATTCGTCACTACAAAGTATTCAC-TCACAGAG----TTT----AATATAAT----------TGCGTAAATTG---------------ATTA-A---AT----ATTAAC-TTTAATTCTAGGTTTACTTCCCCGTAAGACATCAATTGGTGCAGCATCTCATAAATTATATGCAGCGCTTAGGATTTCCGCCAAACGCTTCTATTGAGCATAAGAAATTGGCTGTGGACTTGGCAGAAGTTATCATAAAATGGGAGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................TATATGCAGCGCTTAGGAT............................................................................1911.001000010
................................................................................................................................................................................................................................................................................GTTATCATAAAATGGGAGCTGC.2211.001100000
droGri2
CGATACAGCAGCTGTTCCACATTCTTCAGCTGATTATTCGTCATTATAAGGTTAGTGCAATAAGGAG----TCT----TAT--AAT----------TG---------CCAAATTGA-----------CAC---TAATCGCAAT-CCAATCCTTAGGTTTATTTCCCTGTCAGACACCAGTTGGTGCAGCATCTTATTAACTATATGCAACGTTTGGGATTTCCGCCAAGTGCTTCTATTGAACATAAAAAATTGGCTGTGGATTTAGCGGAAGTTATAATCAAATGGGAACTACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:40 PM