ID:

dsi_30753

 Coordinate:

2r:5833968-5834117 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5 -15.0 -14.8 -14.6

Flybase annnotation

CDS [2r_5834118_5834765_-]; exon [2r_5834118_5835122_-]; intron [2r_5833102_5834117_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCAGTACAAGTTCTGCGTGGACGGCGAGTGGAAGCACGATCCCAAGCTGGTCAGTTGGGCGGAAAATCAATATATGCAGCAGGCTCTTCGCTTTCAGTGTTTTCGATTCGGGCGCCCGAATGACGCAGTTAACGATTTTCGCCCCGCGGGTTGTGTAATCGCCGTAAACAAAACGAAGTCTCCCAGTAATCAGTAGTGGATTTCAATTGGGTTCAGAGATGCTCATCCAGCTTTAGCTTTTTTTTGGAG
***********************************************************************************************..........(((....(((((((.....((.((........)).)).....))))).))...)))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M025
embryo
 M053
female body
...........................................CAAGCTGGTCGGTTGGGCG............................................................................................................................................................................................ 19 1 1 4.00 4 0 0 4 0 0 0 0 0 0
...............................................................................................CAGTGTTTTCGATTCGGGCGC...................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....TACAAGTTCTGCGTGGACGGCGA.............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............TCTGCGTGGACGGCGAGTGG.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................GTGGAAGCACGATCCCAAGCT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................CCCCGCGGGTTGTGTAATC......................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................GTGGACGGCGAGTGGAAGC...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................TTCAGTGTTTTCGATTCGGGC........................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................GAAGCACGATCCCAAGCTGGT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............TGCGTGGACGGCGAGTGGAAGCACGA.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................ACGGCGAGTGGAAGCACGATCCC.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....GTACAAGTTCTGCGTGGAC................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1
.TCAGTACAAGTTCTGCGTGGAC................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................................................AGTGTTTTCGATTCGGGCGCC..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................GACGATCCCTAGCTGGTCTG................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................TGGGTTCCGAGATCCTCGTC...................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0
..........................GAGTGGAAGCCCGAT................................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0
...............GCGTGGACGACGAGT............................................................................................................................................................................................................................ 15 1 20 0.20 4 0 0 0 4 0 0 0 0 0
.................................AGCACGAACCCGATCTGGTC..................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0
.........................................................GGCCGGAAAATCAATA................................................................................................................................................................................. 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0
...................................GACGATCCCTAGCTGGT...................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0
....................................ACGATCCATAGCTGGTC..................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................TTAGCTTTTTATTGGA. 16 1 15 0.07 1 0 0 0 0 1 0 0 0 0
.......................................ATCCCTAGCTGGTCTG................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAGTCATGTTCAAGACGCACCTGCCGCTCACCTTCGTGCTAGGGTTCGACCAGTCAACCCGCCTTTTAGTTATATACGTCGTCCGAGAAGCGAAAGTCACAAAAGCTAAGCCCGCGGGCTTACTGCGTCAATTGCTAAAAGCGGGGCGCCCAACACATTAGCGGCATTTGTTTTGCTTCAGAGGGTCATTAGTCATCACCTAAAGTTAACCCAAGTCTCTACGAGTAGGTCGAAATCGAAAAAAAACCTC
*****************************************************************************************..........(((....(((((((.....((.((........)).)).....))))).))...)))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body
..............................................................................TCGTCCGAGAAGCGAAAGTCA....................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0
..............................................................................................................................GTCAATTGCTAAAAGCGGGGCGCCCA.................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................TGCTAGGGTTCGACCAGTCAAC................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTCATTAGTCATCACCTAAA.............................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................CTTCGTGCTAGGGTTCGACCA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAACCCAAGTCTCTACGAGTA....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................GTGCTAGGGTTCGACCAG..................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTGCTTCAGACGGTCATTAGT......................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................GCTCACCTTCGTGCTAGGGTT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................CCTTCGTGCTAGGGTTCGACC....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................GTTAAGCCCGCGGGCT.................................................................................................................................. 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................TTAAGAGGGTCATTGGTCAT...................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
CAGTCATGTTCAAGACTCAG...................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0
.......................................................................................................AGCTAAGCCCGCGGAATT................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0
..GGCATGTTCAAGACTCA....................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TCAAGATCGAAAAAAAAC... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 2
.......................................TAGGGTTCGATTAGTCAACT............................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................GTTGTTTTAGTTCAGAGGGT................................................................ 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGATTAGCGGTATTTGT............................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TAGAGGGTCATTGGTCAT...................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGTCTCTACGTGTAAG..................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 12:54 AM