ID:

dsi_3074

 Coordinate:

3r:19399952-19400186 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.4 -36.4 -36.4

Flybase annnotation

exon [3r_19400187_19400249_-]; CDS [3r_19400187_19400249_-]; CDS [3r_19399816_19399951_-]; exon [3r_19399278_19399951_-]; intron [3r_19399952_19400186_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTACCATTTAAACTGAACTCGTTACTAATATCAGCCTTATATTTGTTGTTCCATCTGCCACGGTGCCCGTATTACTTCCTTGGGGGCGCACAGATTCCCATCCATAACCGCTTGATTAATGTGGTGTGCGGCAGCATCCTGTAGTTCTTAGTTTTATCGTTACGATACCTTGTAAAATCTTGCCTATGCTTTGCCATTTCTAATTCGATTCTTTTCTCCCACAAACAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAA
**************************************************.((((((....))))))....(((.(((..........((((.........))))......(((((...((((((.((.........)).))))))...(((....)))((((.((((.........)))))))).)))))......((((....(((........((((((....))))))........)))....))))...........)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...........................TTGGTACAGCTGTGGGAGT................................................................................................................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GATGACGGAGGACCCCAAG.......... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TCTAATTCGATTCTTTTCTCCC.......................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGACGGAGGACCCC............. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................TGATGACGGAGGACCCCAAGCTGTGGC... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................ATGACCGCTTGATTAAGG............................................................................................................................................................. 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GCCTGATGACGGAGGACC............... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATTCGGCCTGATGACGGAGGACCCC............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCACCTGAGGCAATTCGGCCTGA........................... 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTCACCTGAGGCAATTCGGCCTGATGA........................ 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCCAAG.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGACGGAGGAC................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGA.................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................GTTGGTAGAGCTGTGG..................................................................................................................................................................................................................................................................................................... 16 1 15 0.33 5 0 0 0 0 0 1 0 0 4 0
.................................................................TAGACTGAACTCGTT............................................................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CGTTCCGATAACTTGTA........................................................................................................ 17 2 12 0.17 2 0 0 2 0 0 0 0 0 0 0
...........................TTGGTAGAGCTGTGG..................................................................................................................................................................................................................................................................................................... 15 1 20 0.15 3 0 0 1 0 0 0 0 0 2 0
..............................................................................................................................................................................AATGTGGTGTTCGGGAGGAT............................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
............................TGATACAGCTGTGGGA................................................................................................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATAGTTCTTAGTTTTA.......................................................................................................................... 16 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GAGGCAATTTGGCTTGAGG......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................ACCACAAACCGTCACCAGA.......................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................TTCCTTCGGGTCGCACCG......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................TTCGATCCTCTTCTCCCGC........................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGTACCTATGACAAGATGTTCGTGTCCAACCATGTCGACACCCTCAGCCGCATTCACAATGGTAAATTTGACTTGAGCAATGATTATAGTCGGAATATAAACAACAAGGTAGACGGTGCCACGGGCATAATGAAGGAACCCCCGCGTGTCTAAGGGTAGGTATTGGCGAACTAATTACACCACACGCCGTCGTAGGACATCAAGAATCAAAATAGCAATGCTATGGAACATTTTAGAACGGATACGAAACGGTAAAGATTAAGCTAAGAAAAGAGGGTGTTTGTCAGTGGACTCCGTTAAGCCGGACTACTGCCTCCTGGGGTTCGACACCAATT
**************************************************.((((((....))))))....(((.(((..........((((.........))))......(((((...((((((.((.........)).))))))...(((....)))((((.((((.........)))))))).)))))......((((....(((........((((((....))))))........)))....))))...........)))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
........................................................................................................................................................................................................................................................................................TTGTCAGTGGACTCCGTTAAG.................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0
.....CTATGGCAAGGTGTTCGTGTCC.................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................GTTTGTCAGTGGACTCCGTTA.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TTTGTCAGCGGACTCTGTAAA................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................ATTGGCGAGCTAATT............................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 1 0
...........................................................................AGCAATGAGTATAGTCGTA................................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0
............................ACCATGCCAACACCCTTAGC............................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AGCATCAAATTTGCAATGC.................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 1
...........................................................................AGCAATGAGTATAGT..................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0
.........................................................................................................................CGGGAATAGTGAAGGTACC................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0
.....................................................................CACTTGGGCAATGATT.......................................................................................................................................................................................................................................................... 16 2 18 0.06 1 1 0 0 0 0 0 0 0
..........................................................................................................................GGGCATAGTGCAGGA...................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................CCAGCACTGCTATGGAAC.......................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................................GGTCCCACGAGCATAA............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19399902-19400236 - dsi_3074 GCATGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGGG-----GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCTTG-------CC-T------------A--T--GCTTTGC-CATTTCTAATTCGAT---TCTT-T-T-CTCCCAC--------AAACAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAA
droSec2 scaffold_0:20202231-20202564 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAATTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGGG-----GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCCTG-------CC-T------------A--T--ACT-TGC-CACTTCTAATTCGAT---TCTT-T-T-CTCCCAC--------AAACAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAA
dm3 chr3R:19860702-19861035 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--A------TT--------------CCATCTGC-CACGGTGCCCGTATTACTACC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTA--ATT-AA--TTT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCCTG-------CC-T------------C--T--GCTTTTC-CAATTCTAACTCGAT---TCTT-T-T-CTCCCAC--------ATGCAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAA
droEre2 scaffold_4820:8196113-8196446 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTTGTTACTAATGTAAGCCT-----TA----TATTT-GTT--G------TT--------------TCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------TGCTTCCCGTAGTT-----------------------------------------------------------CTTAATTTTATC----GTTACGATACCTTT-T-AA-AATCCTG-------CC-T------------C--T--GGTTTAT-CCATTCTAATTCGAT---TCTT-T-T-TTCTCAC--------AAGCAGCCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTGGA
droYak3 3R:26640424-26640757 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AA-TTAAACTGAACTTGTTACTAATGTCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTACTACTTCC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCTTCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTT-T-AA-AATCCTG-------CC-T------------C--T--GGTTTAT-CAATTCTAATTCAAT---TCCC-T-T-TTCTCAC--------AAGCAGCCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTGGA
droEug1 scf7180000409798:531739-532078 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTA---TT--------------TCATCTGC-CACGGTGCCCGTACTACTTCC--------------------ATGA------GGTGCAC-------A-----CTTCCCC-ATC----------------------CAA--A-A----TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCTTCTTGTAGTC-----------------------------------------------------------TTTAGTTATACC----CTTAAGATACATTT-T-AAAAATCTTT-------CC-T------------C--T--TATTCAG-TTTTTCTAATCCTTT---TCTT-TAT-CGTCCAC--------ATGCAGCCATTTGCGGCAATTCGGCCTAATGACAGAGGATCCAAAGTTGTGGTGGA
droBia1 scf7180000302136:205837-206163 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTGCCCGATTTACTTCC--------------------ATGA------GGCGCAC-------T-----GATCCCC-CTC----------------------CAT--A------ACCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTC-----------------------------------------------------------CTTAGTTCTACC---------------ACT-C-GA-AATCTTG-------CC-T------------C--T--GCTTCAG-CCGTACTAATTCTAT---TCTT-TCT-CTTCCAC--------ATGCAGCCACCTGAGGCAATTTGGCCTGATGACGGAGGATCCCAAGTTGTGGTGGA
droTak1 scf7180000414373:194732-195051 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCTATCTATC----TATTT-GTT--GTTG---TT--------------CC------------------------------------------------ATGA------GGCGCAC-------A-----GTTCCCC-ATT----------------------CAT--A------ACCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGTATCCTGTAGTC-----------------------------------------------------------CTTAGCTTTACTACCTTTTACTATACCTTT-T-GAAAATCCTT-------CT-T------------C--T--GAAGCAG-A-AAACTAATCCTGT---GATCTT-T-CTTCCAC--------ATGCAGCCACCTGAGGCAATTTGGCCTGATGACAGAGGATCCCAAGCTGTGGTGGA
droEle1 scf7180000491008:161222-161562 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCGAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------ATGAG-A---TGCGCAC-------A-----GATCCCCTATC----------------------CAT--A------TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATCCTCTAGTT-----------------------------------------------------------TTTAGTTTTACC----CTTACAATACCTTT-T-TA-AATCTTT-------CC-A------------C--T--GCTTCAA-TCGTTCTAATCCAAA---TCTT-TTT-ACTCCAC--------ATGCAGTCACTTGCGGCAATTTGGCTTGATGACGGAGGATCCCAAGCTGTGGTGGA
droRho1 scf7180000779169:33585-33928 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATATCAGTCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTCCCCGTATTACTTCC--------------------ATGGG-A---GGCGCAC-------A-----GATCCCCTATC----------------------CAT--A------ACCGCTTA--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATTTTATAGTT-A-------------------------------------TAG-----------------TTTAGTTTTACC----CTAACACCACCTTT-T-AA-AATCTTT-------CG-A------------C--T--GTTTCAA-TTGTTCTAATCCGCA---CCTT-T-C-CTTCCAC--------ATGCAGCCACTTGCGGCAATTCGGCTTGATGACGGAGGATCCCAAGCTTTGGTGGA
droFic1 scf7180000453800:2043658-2043995 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTA---TT--------------CCATTTGC-CACGGTGCCCGTATTACTTCC--------------------ATGA------GGCGCAC-------A-----AATCCCC-AAC----------------------CAT--A------TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGT---------------------------AGCATCCTGTAGAC-----------------------------------------------------------TCTAGCTTTACC----CTTAAGAAACCTTT-T-AA-AAACTTT-------CC-G------------C--T--GTTGCTT-TCGATCTAATCAGTA---CCTT-TCT-CTCCCAC--------ACGCAGCCACTTGCGGCAGTTTGGCTTGATGACGGAGGATCCAAAGCTGTGGTGGA
droKik1 scf7180000302778:259677-260002 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-ATTTCAAACTGAACTCGTTACTAATGTCAGCAT-----TC----TATCTGTTT--GTTA---TTGTTACTTGTTGATTCCATCCGC-CACAGTGACCA------------------------------ATGA------GC---------------------------TC----------------------CAT--C------CCCGCTTA--ATT-AA--CGT---------GGTG----------TGCGAC---------------------------A----------ATC-----------------------------------------------------------CTTAGTCTTACC----CCTAAACCAA---T-T--A-AATGTTT----TT-CC---TGC--------------TT-TCAACCTTTTCTAACTCCAC---CCTT-TCT-CTTTCACATGCTCAACCGCAGCCACTTGAGGCAGTTTGGCCTCATGACAGACGATCCGAGGCTGTGGTGGA
droAna3 scaffold_13340:7694677-7695016 + GCCTGGATCCTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTAACC-AT-TCATACTGAACTCGTTACTAATGTCAGCTC-----TC----TATTT-GTCATGTGATTGTA--------------TCATCTGC-CACGATGTC-GTGCAAGTTGC----------------GTACAAGA------GATGTAC-------A-----GACCCCC-GCT----------------------CAT--A------TGTGCTTG--ATT-AACGTGT---------GGTG----------TGCGAC---------------------------AGCATCCTGTAGCTTT-------------------------------------TACT----------------CCTTGTTTCA------------------CA-T-AA-AATATTA-------CT-T------------T--T--ATTTAAT-TGATACTAATAGTTT---CCTT-T-C-GATCAAC--------CTGCAGCCACCTGAGACAATTTGGCCTGATGACAGAGGACCCGAAGCTGTGGTGGA
droBip1 scf7180000396708:1148901-1149243 - GCCTGGATCCTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTAACC-AT-TCATACTGAACTCGTTACTAATGTCAGCTC-----TC----TACTA-TTT--G------TC--------------TCATCTGATGATGATGT-CGTACACGCTAC--------------------AAGG------GATGTACATAC---A-----GACTCCC-CTC------------------CGCTCAT--A------TGTGCTTG--ATT-AACGTGT---------GGTG----------TGCGAC---------------------------TGCATTCTGTAGTTTA-------------------------------------TACT----------------CTTTGTTTTTGC-----------------A-T-CA-AATCTTA-------CA-A------------CTATATTCTAACT-ATATACTAATTATT----GATTTT-T-GTTCAA----AC---CTGCAGCCACCTGCGACAATTTGGCCTGATGACCGAGGACCCGAAGCTGTGGTGGA
dp5 2:14380997-14381355 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTTTGGGAGTCGGCGTAAGTGTTTACC-AT-TCAAACTGAATTTGTTACTAATATCAGCCC-----TCTGTG---TT-GTT--GTTG---TTTCCATATATGTACTATATCTGC-CATGGTGCCCACAA---------------------A-----TCGA------GATCCACATATATAA-----GATCCCC-GAT----------------------CATGTC------ACTGCTTA--CTAAAA--CGT---------GGTGTT--------TGCGG---------------------------------CCTGTAGTTTAAAA------------------------------------------------------CCTACTTTA----------------------------ATCTTTGTTGTTC-CT--TGCCTTTTTCGC--T--GTTTTAT-CC-AACTAATCTAAAGCCCTTT-TCT-----C--TTGTCCTGCAACAGACACTTGCGGCATTTCGGACTCTTGACTGAGGATAGCAAGCTGCTGTGGA
droPer2 scaffold_0:6046794-6047152 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTTTGGGAGTCGGCGTAAGTGTTTACT-AT-TCAAACTGAATTTGTTACTAATATCAGCCC-----TCTGTG---TT-GTT--GTTG---TTTCCATATATGTACTATATCTGC-CATGGTGCCCACAA---------------------A-----TCGA------GATCCACATATATAA-----GATCCCC-GAT----------------------CATGTC------ACTGCTTA--CTAAAA--CAT---------GGTGTT--------TGCGG---------------------------------CCTGTAGTTTAAAA------------------------------------------------------CCTACTTTA----------------------------ATCTTTGTTGTTC-CT--TGCCTTTTCCGC--T--GTTTTAT-CC-AACTAATCTAAAGCCCTTT-TCT-----C--TTGTCCTGCCACAGACACTTGCGGCATTTCGGACTCTTGACGGAGGATAGCAAGCTGCTGTGGA
droWil2 scf2_1100000004943:10858660-10859092 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGCAATCGGCGTAAGTGTTAACC-AT-TCAAATTGAATTTCTTACTAATATAAGCAT---------------T-GTT--G------T-----------------CTCTTT-CACGATGCCCCA-----------------CGATAAG-----TCGA------CATACATCTATCTCTCTTTTG-TCCTCTATCCACCACCAATTACCACAA---TCATCACAATCACTTTGCTTGCTATA-AA--CGTGCGAATTACGGTG----------TACGGTGTTTGGAACGCAGTGTGGCGGGTTCAGAGCTTCTTGTAGATTAAGCAACATTTATTCTCAATTGATACATTATGACAATA----TATACATACATACAGACATAG------------------------T-T-AA-AATCCTG-------TA-A------------C--T--TCTATGA-C--CACTAAT-CAAT---TATC-T-T-TACTTTC--------ATCTAGCCATCTGCGACAGTTTGCTCTGATGACCGAGAATCCTCAGATGTGGTGGA
droVir3 scaffold_13047:18605783-18606128 - dvi_17552 GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CA-TA-TTTGACTTAAATATTTACTAATGCTG---------TCTGGG--TTT-CTT--GTTA---TA---CTAT-TATATTCTACATG--CATTGCGACAGTAA---TTCC--------------------ATGCCCATCTTCCGCAC-------A-----AAAACAC-ACC------------------C--GAAC--A------CACGCTTA--TTTAAA--TGT---------GTTTTTTTTTTGTATGCAAC---------------------------AACATATT-----------------------------------------------------------------------C-------------CGAAAACT---C-CA-ATTGTAT-------CT-TCTGAATTTGTAGC--T--G---------AAACTAATCCAAC---AATT-TGT-TTACAACATTC----TCTTAGATATTTGCGACAATTCGGACTCATGACAGAGGATCCAAAGGTTTGGCTAA
droMoj3 scaffold_6540:7151103-7151435 - GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CACA--TCTGACTTGAATATTTACTAATGCTG---------TCTGGG---TT-CT----------------------------------------TTACTGTATTCCTAACATGCGCTGCGATCATTCT--AAA----CCTCACGCAC-------T-----CATACAC---C---------------------TAAC--A------CACGCTTT--GCA-AA--TGT---------GTTG----------TACGGA----------------------------TCATACGACAATA-------------------------------------------TA--------------CTTAGTT----C----CTTAAGAAACCCTCCCTCA--ATTCTGTTTA---------------GTACC--T--G---------TATCTCATGC-AT---AATT-TGTCTTATCACATTC----TCTTAGATATTTGCGACAATTCGGACTGATGACTGAGGATCCGAAAGTTTGGCTCA
droGri2 scaffold_14906:4642679-4642781 + GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTATGGGAATCGGCGTAAGTCTTA-CATAA-TCCATTTAAACT-CTTACTAATATTG---------TCTG---GTTT-GTT--G------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCATGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGGG-----GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCTTG-------CC-T------------A--T--GCTTTGC-CATTTCTAATTCGAT---TCTT-T-T-CTCCCAC--------AAACAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................TTGGTACAGCTGTGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGGAGGACCCCAAG..........1911.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAATTCGAT---TCTT-T-T-CTCCC..................................................................2211.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGACGGAGGACCCC.............2911.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACGGAGGACCCCAAGCTGTGGC...2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATGACGGAGGACC...............1811.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGCCTGATGACGGAGGACCCC.............2511.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCCAAG..........2611.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGACGGAGGAC................2611.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGA....................1911.00100000000100000000
droSec2
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAATTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGGG-----GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCCTG-------CC-T------------A--T--ACT-TGC-CACTTCTAATTCGAT---TCTT-T-T-CTCCCAC--------AAACAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGG..................1811.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCGGCCTGATGACGGAG...................2111.0010010
................................ACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGA....................1911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAC--------AAACAGTCACCTGAGT........................................2211.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATGACGGAGGACCCCAAGCT........2511.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGACGGAGGACCCCAAGCTGTG.....2611.0010100
dm3
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATATCAGCCT-----TA----TATTT-GTT--A------TT--------------CCATCTGC-CACGGTGCCCGTATTACTACC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTA--ATT-AA--TTT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTG-T-AA-AATCCTG-------CC-T------------C--T--GCTTTTC-CAATTCTAACTCGAT---TCTT-T-T-CTCCCAC--------ATGCAGTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................ACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18129.00290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010100000000000000000000000010100000000000000000001000000000001000001110020100001002200001000100001000700000010000
...............................TACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000100000000000001000100101000001010100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACGGAGGACCCCAAGCTGTGGT...2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACC...............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................CGTATTACTACC--------------------TTGG------GGCGC....................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGAGGACCCC.............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCTGATGACGGAGGACCC..............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CAGGTTGGTACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000
.............................GGTACAGCTGTGGGAGTCGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAATTCGGCCTGATGACGGAGG..................2712.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCCAAG..........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGACGGAGGAC................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................ATTCCC-ATC----------------------CAT--A------ACCGCTTG--..............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCC.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................T-GTT--A------TT--------------CCATCTGC-CACGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGGACCCCAAGCTGT......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATGACGGAGGACCCC.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGATGACGGAGGACCC..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................ACAGGTTGGTACAGCTGTGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCCA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACAGGTTGGTACAGCTGTGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................CAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGACCCCAAGCTGTGGTT..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GTTCTACAAGCACAGGTTGGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGAGGACCCCAAGCTGTGGTT..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................TATTACTACC--------------------TTGG------GGCGCAC-------...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACGGAGGACCCCA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGATGACGGAGGACCCC.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCGGCCTGATGACGGA....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACGGAGGACCCCAAGCT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGGC---------------------------AGCATCCTGTAGTT-----------------------------------------------------------CTT...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCTACAAGCACAGGTTGGTACAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTGGTACAGCTGTGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGA....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGG.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGTGGGAGTCGGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................A----TATTT-GTT--A------TT--------------CCATCTGC-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACGGAGGACCCCAAGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGAGGACCCCAAGCTGT......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGAGGACCCCA............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GCTGTGGGAGTCGGCGTAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCACAGGTTGGTACAGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGGACCCCAAGCT........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACCCCAAGC.........2711.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTCACCTGAGGCA......................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CCATCTGC-CACGGTGCCCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAAGCACAGGTTGGTACAGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAATTCGGCCTGATGACGGAGGC.................2811.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTGAGGCAATTCGGCCTGATGACG......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TACAGCTGTGGGAGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGACGGAGGACCCCCG...........20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTTGTTACTAATGTAAGCCT-----TA----TATTT-GTT--G------TT--------------TCATCTGC-CACGGTGCCCGTATTACTTCC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------TGCTTCCCGTAGTT-----------------------------------------------------------CTTAATTTTATC----GTTACGATACCTTT-T-AA-AATCCTG-------CC-T------------C--T--GGTTTAT-CCATTCTAATTCGAT---TCTT-T-T-TTCTCAC--------AAGCAGCCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................ACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0081000160
............................TGGTACAGCTGTGGGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATTCGGCCTGATGAC.......................1911.0011000000
...............................TACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................AGGTTGGTACAGCTGTGGGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AA-TTAAACTGAACTTGTTACTAATGTCAGCCT-----TA----TATTT-GTT--G------TT--------------CCATCTGC-CACGGTGCCCGTACTACTTCC--------------------TTGG------GGCGCAC-------A-----GATTCCC-ATC----------------------CAT--A------ACCGCTTG--ATT-AA--TGT---------GGTG----------TGCGGC---------------------------AGCTTCCTGTAGTT-----------------------------------------------------------CTTAGTTTTATC----GTTACGATACCTTT-T-AA-AATCCTG-------CC-T------------C--T--GGTTTAT-CAATTCTAATTCAAT---TCCC-T-T-TTCTCAC--------AAGCAGCCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................ACAGCTGTGGGAGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00310011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCCTGATGACGGAGGACC...............2411.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCTGATGACGGAGGACC...............2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGCCTGATGACGGAGG..................2011.00100000010000
droEug1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTA---TT--------------TCATCTGC-CACGGTGCCCGTACTACTTCC--------------------ATGA------GGTGCAC-------A-----CTTCCCC-ATC----------------------CAA--A-A----TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCTTCTTGTAGTC-----------------------------------------------------------TTTAGTTATACC----CTTAAGATACATTT-T-AAAAATCTTT-------CC-T------------C--T--TATTCAG-TTTTTCTAATCCTTT---TCTT-TAT-CGTCCAC--------ATGCAGCCATTTGCGGCAATTCGGCCTAATGACAGAGGATCCAAAGTTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droBia1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTGCCCGATTTACTTCC--------------------ATGA------GGCGCAC-------T-----GATCCCC-CTC----------------------CAT--A------ACCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATCCTGTAGTC-----------------------------------------------------------CTTAGTTCTACC---------------ACT-C-GA-AATCTTG-------CC-T------------C--T--GCTTCAG-CCGTACTAATTCTAT---TCTT-TCT-CTTCCAC--------ATGCAGCCACCTGAGGCAATTTGGCCTGATGACGGAGGATCCCAAGTTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droTak1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATGTCAGCCTATCTATC----TATTT-GTT--GTTG---TT--------------CC------------------------------------------------ATGA------GGCGCAC-------A-----GTTCCCC-ATT----------------------CAT--A------ACCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGTATCCTGTAGTC-----------------------------------------------------------CTTAGCTTTACTACCTTTTACTATACCTTT-T-GAAAATCCTT-------CT-T------------C--T--GAAGCAG-A-AAACTAATCCTGT---GATCTT-T-CTTCCAC--------ATGCAGCCACCTGAGGCAATTTGGCCTGATGACAGAGGATCCCAAGCTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droEle1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCGAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTGCCCGTATTACTTCC--------------------ATGAG-A---TGCGCAC-------A-----GATCCCCTATC----------------------CAT--A------TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATCCTCTAGTT-----------------------------------------------------------TTTAGTTTTACC----CTTACAATACCTTT-T-TA-AATCTTT-------CC-A------------C--T--GCTTCAA-TCGTTCTAATCCAAA---TCTT-TTT-ACTCCAC--------ATGCAGTCACTTGCGGCAATTTGGCTTGATGACGGAGGATCCCAAGCTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droRho1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-AT-TCAAACTGAACTCGTTACTAATATCAGTCT-----TC----TATCT-GTT--GTTG---TT--------------CCATCTGC-CACGGTCCCCGTATTACTTCC--------------------ATGGG-A---GGCGCAC-------A-----GATCCCCTATC----------------------CAT--A------ACCGCTTA--ATT-AA--CGT---------GGTG----------TGCGGC---------------------------AGCATTTTATAGTT-A-------------------------------------TAG-----------------TTTAGTTTTACC----CTAACACCACCTTT-T-AA-AATCTTT-------CG-A------------C--T--GTTTCAA-TTGTTCTAATCCGCA---CCTT-T-C-CTTCCAC--------ATGCAGCCACTTGCGGCAATTCGGCTTGATGACGGAGGATCCCAAGCTTTGGTGGASizeHit CountTotal NormTotal
No Reads
droFic1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CC-AT-TTAAACTGAACTCGTTACTAATGTCAGCCT-----TC----TATCT-GTT--GTTA---TT--------------CCATTTGC-CACGGTGCCCGTATTACTTCC--------------------ATGA------GGCGCAC-------A-----AATCCCC-AAC----------------------CAT--A------TCCGCTTG--ATT-AA--CGT---------GGTG----------TGCGGT---------------------------AGCATCCTGTAGAC-----------------------------------------------------------TCTAGCTTTACC----CTTAAGAAACCTTT-T-AA-AAACTTT-------CC-G------------C--T--GTTGCTT-TCGATCTAATCAGTA---CCTT-TCT-CTCCCAC--------ACGCAGCCACTTGCGGCAGTTTGGCTTGATGACGGAGGATCCAAAGCTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droKik1
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAGTCGGCGTAAGTGTTA-CC-ATTTCAAACTGAACTCGTTACTAATGTCAGCAT-----TC----TATCTGTTT--GTTA---TTGTTACTTGTTGATTCCATCCGC-CACAGTGACCA------------------------------ATGA------GC---------------------------TC----------------------CAT--C------CCCGCTTA--ATT-AA--CGT---------GGTG----------TGCGAC---------------------------A----------ATC-----------------------------------------------------------CTTAGTCTTACC----CCTAAACCAA---T-T--A-AATGTTT----TT-CC---TGC--------------TT-TCAACCTTTTCTAACTCCAC---CCTT-TCT-CTTTCACATGCTCAACCGCAGCCACTTGAGGCAGTTTGGCCTCATGACAGACGATCCGAGGCTGTGGTGGASizeHit CountTotal NormTotal
No Reads
droAna3
GCCTGGATCCTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTAACC-AT-TCATACTGAACTCGTTACTAATGTCAGCTC-----TC----TATTT-GTCATGTGATTGTA--------------TCATCTGC-CACGATGTC-GTGCAAGTTGC----------------GTACAAGA------GATGTAC-------A-----GACCCCC-GCT----------------------CAT--A------TGTGCTTG--ATT-AACGTGT---------GGTG----------TGCGAC---------------------------AGCATCCTGTAGCTTT-------------------------------------TACT----------------CCTTGTTTCA------------------CA-T-AA-AATATTA-------CT-T------------T--T--ATTTAAT-TGATACTAATAGTTT---CCTT-T-C-GATCAAC--------CTGCAGCCACCTGAGACAATTTGGCCTGATGACAGAGGACCCGAAGCTGTGGTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TCTACAAGCACAGGTTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....GGATCCTGTTCTACAAGCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGACAGAGGACCCGAAGC.........2111.001000001
........................AGGTTGGTACAGCTGTGGGAATCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-T-C-GATCAAC--------CTGCAGCC................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTTGGCCTGATGACAGAGGACCC..............2811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---CCTT-T-C-GATCAAC--------CTGCAG..................................................2211.001100000
droBip1
GCCTGGATCCTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTAACC-AT-TCATACTGAACTCGTTACTAATGTCAGCTC-----TC----TACTA-TTT--G------TC--------------TCATCTGATGATGATGT-CGTACACGCTAC--------------------AAGG------GATGTACATAC---A-----GACTCCC-CTC------------------CGCTCAT--A------TGTGCTTG--ATT-AACGTGT---------GGTG----------TGCGAC---------------------------TGCATTCTGTAGTTTA-------------------------------------TACT----------------CTTTGTTTTTGC-----------------A-T-CA-AATCTTA-------CA-A------------CTATATTCTAACT-ATATACTAATTATT----GATTTT-T-GTTCAA----AC---CTGCAGCCACCTGCGACAATTTGGCCTGATGACCGAGGACCCGAAGCTGTGGTGGASizeHit CountTotal NormTotal
No Reads
dp5
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTTTGGGAGTCGGCGTAAGTGTTTACC-AT-TCAAACTGAATTTGTTACTAATATCAGCCC-----TCTGTG---TT-GTT--GTTG---TTTCCATATATGTACTATATCTGC-CATGGTGCCCACAA---------------------A-----TCGA------GATCCACATATATAA-----GATCCCC-GAT----------------------CATGTC------ACTGCTTA--CTAAAA--CGT---------GGTGTT--------TGCGG---------------------------------CCTGTAGTTTAAAA------------------------------------------------------CCTACTTTA----------------------------ATCTTTGTTGTTC-CT--TGCCTTTTTCGC--T--GTTTTAT-CC-AACTAATCTAAAGCCCTTT-TCT-----C--TTGTCCTGCAACAGACACTTGCGGCATTTCGGACTCTTGACTGAGGATAGCAAGCTGCTGTGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGAGGATAGCAAGCTGCTGTGG.2612.0020000000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCATTTCGGACTCTTGACT......................2312.0020000000020
................................ACAGCTTTGGGAGTCGGCGTAAGTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCGGCATTTCGGACTCTTGACTG.....................2711.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTGAGGATAGCAAGCTGCTGTGG.2711.0010000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCATTTCGGACTCTTGACT......................2111.0010000000010
..........................GTTGGTACAGCTTTGGGAGTCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGACTGAGGATAGCAA...........1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGACTGAGGATAGCAAGCTGC......2411.0010000000010
droPer2
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTTTGGGAGTCGGCGTAAGTGTTTACT-AT-TCAAACTGAATTTGTTACTAATATCAGCCC-----TCTGTG---TT-GTT--GTTG---TTTCCATATATGTACTATATCTGC-CATGGTGCCCACAA---------------------A-----TCGA------GATCCACATATATAA-----GATCCCC-GAT----------------------CATGTC------ACTGCTTA--CTAAAA--CAT---------GGTGTT--------TGCGG---------------------------------CCTGTAGTTTAAAA------------------------------------------------------CCTACTTTA----------------------------ATCTTTGTTGTTC-CT--TGCCTTTTCCGC--T--GTTTTAT-CC-AACTAATCTAAAGCCCTTT-TCT-----C--TTGTCCTGCCACAGACACTTGCGGCATTTCGGACTCTTGACGGAGGATAGCAAGCTGCTGTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGACTCTTGACGGAGGATAGC.............2613.003300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCGGCATTTCGGACTCTTGACGGA....................2812.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACACTTGCGGCATTTCGGA...............................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACACTTGCGGCATTTCGGAC..............................2311.001100000
......................ACAGGTTGGTACAGCTTTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGACTCTTGACGGA....................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGACTCTTGACGGG....................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTGCGGCATTTCGGACTCTTGACGGA....................2911.001100000
droWil2
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGCAATCGGCGTAAGTGTTAACC-AT-TCAAATTGAATTTCTTACTAATATAAGCAT---------------T-GTT--G------T-----------------CTCTTT-CACGATGCCCCA-----------------CGATAAG-----TCGA------CATACATCTATCTCTCTTTTG-TCCTCTATCCACCACCAATTACCACAA---TCATCACAATCACTTTGCTTGCTATA-AA--CGTGCGAATTACGGTG----------TACGGTGTTTGGAACGCAGTGTGGCGGGTTCAGAGCTTCTTGTAGATTAAGCAACATTTATTCTCAATTGATACATTATGACAATA----TATACATACATACAGACATAG------------------------T-T-AA-AATCCTG-------TA-A------------C--T--TCTATGA-C--CACTAAT-CAAT---TATC-T-T-TACTTTC--------ATCTAGCCATCTGCGACAGTTTGCTCTGATGACCGAGAATCCTCAGATGTGGTGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................TG-TCCTCTATCCACCACCAATTACCACAA---.....................................................................................................................................................................................................................................................................................................................................................2911.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCGAGAATCCTCAGATGTGG....2511.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCTGATGACCGAGAATCCTCG...........2611.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGACAGTTTGCTCTGATG.........................2111.00100010
droVir3
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CA-TA-TTTGACTTAAATATTTACTAATGCTG---------TCTGGG--TTT-CTT--GTTA---TA---CTAT-TATATTCTACATG--CATTGCGACAGTAA---TTCC--------------------ATGCCCATCTTCCGCAC-------A-----AAAACAC-ACC------------------C--GAAC--A------CACGCTTA--TTTAAA--TGT---------GTTTTTTTTTTGTATGCAAC---------------------------AACATATT-----------------------------------------------------------------------C-------------CGAAAACT---C-CA-ATTGTAT-------CT-TCTGAATTTGTAGC--T--G---------AAACTAATCCAAC---AATT-TGT-TTACAACATTC----TCTTAGATATTTGCGACAATTCGGACTCATGACAGAGGATCCAAAGGTTTGGCTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTC----TCTTAGATATTTGCGAC.......................................2214.004000000000000000000000000000000000000000000000000000000000000004
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGACTCATGACAGAGG..................2112.002000000000000000000000000000001010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGACTCATGACAGAGGA.................2112.002000000000000000000000000101000000000000000000000000000000000000
..............................GTACAGCTGTGGGAATCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000001000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGACTCATGACAGAGGATCCAAAGG.........2812.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGACTCATGACAGAGGA.................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGACTCATGACAGAGGAT................2111.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGAGGATCCAAAGGT........1911.001000000000100000000000000000000000000000000000000000000000000000
................................ACAGCTGTGGGAATCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
...............TACAAGCACAGGTTGGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
......................................GTGGGAATCGGCGTAAGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATTC----TCTTAGATATTTG...........................................2111.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACAATTCGGACTCATG.........................2011.001000000000000000000000000000001000000000000000000000000000000000
..............................GTACAGCTGTGGGAATCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGGATCCAAAGGTTTGGC...2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................TTTACTAATGCTG---------TCTGGG--TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGACTCATGACAGAGGATC...............2211.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGAGGATCCAAAGGT........2111.001000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCCAAAGGTTTGGCT..1811.001001000000000000000000000000000000000000000000000000000000000000
.........................GGTTGGTACAGCTGTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTGTGGGAATCGGCGTAAGTGTTA-CACA--TCTGACTTGAATATTTACTAATGCTG---------TCTGGG---TT-CT----------------------------------------TTACTGTATTCCTAACATGCGCTGCGATCATTCT--AAA----CCTCACGCAC-------T-----CATACAC---C---------------------TAAC--A------CACGCTTT--GCA-AA--TGT---------GTTG----------TACGGA----------------------------TCATACGACAATA-------------------------------------------TA--------------CTTAGTT----C----CTTAAGAAACCCTCCCTCA--ATTCTGTTTA---------------GTACC--T--G---------TATCTCATGC-AT---AATT-TGTCTTATCACATTC----TCTTAGATATTTGCGACAATTCGGACTGATGACTGAGGATCCGAAAGTTTGGCTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAATTCGGACTGATGACT......................2211.001000001
....................................................................................................................................................................TTCCTAACATGCGCTGCGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
GCCTGGATACTGTTCTACAAGCACAGGTTGGTACAGCTATGGGAATCGGCGTAAGTCTTA-CATAA-TCCATTTAAACT-CTTACTAATATTG---------TCTG---GTTT-GTT--G------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 08:57 PM