ID:

dsi_30715

 Coordinate:

3r:10865454-10865529 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.5 -9.3 -9.1 -9.1

Flybase annnotation

exon [3r_10865373_10865453_+]; CDS [3r_10865373_10865453_+]; CDS [3r_10865530_10865817_+]; exon [3r_10865530_10865817_+]; intron [3r_10865454_10865529_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------##################################################
ATCAGCAAGCCACCCGCGCCATCAAGTCCGCCGATAGCTTTGAGGAGAAGGTAAGTCCACCTGACGCTTGACTCGCTTCCAAATCATTGATTCCGGTTTTCGAAAACCCTTCAACCGATCGGACAGAAAATGCGCAATCGTTTCACGGTGCTCTTCGAACTCGGTGGAGAATATCA
**************************************************..........((...............(((..(((.((((....((((......))))..))))..))).))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................GCCGAAAGCTTTGAGGAG................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................TTCAACCGATCGGACAGT................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................CCGGTTTTCGAAAACCCTT................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................TGATTCCGGCTTTCGAA........................................................................ 17 1 2 0.50 1 0 0 0 1 0 0 0 0
...........................GCGCAGATAGCTTTGATGAGA................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0
...............................CGATAGCTTTGTGGAGAA............................................................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................GCTCTTCGAACGTGTTGGAGA...... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
................................GACAGCTTTGAGGAG................................................................................................................................. 15 1 15 0.27 4 4 0 0 0 0 0 0 0
...................................AGCTTTGACGAGTAGG............................................................................................................................. 16 2 20 0.15 3 0 0 0 0 0 3 0 0
................................GCTAGCTTTGAGGAG................................................................................................................................. 15 1 11 0.09 1 1 0 0 0 0 0 0 0
.........................................................CTCCTGAGGCTTGACT....................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
.........................................................CTCGTGACGCTTGACT....................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
.......AACCAGCCGCGCCATCA........................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTCGTTCGGTGGGCGCGGTAGTTCAGGCGGCTATCGAAACTCCTCTTCCATTCAGGTGGACTGCGAACTGAGCGAAGGTTTAGTAACTAAGGCCAAAAGCTTTTGGGAAGTTGGCTAGCCTGTCTTTTACGCGTTAGCAAAGTGCCACGAGAAGCTTGAGCCACCTCTTATAGT
**************************************************..........((...............(((..(((.((((....((((......))))..))))..))).))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
......................................................................................................................................TTTAGCAAAGTGCCAGGACAAG.................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
...........................................CCTCTTTGATTCAGGTGGA.................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................AATGCGAGCTGTGCGAAGGT............................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0
.......................................................................................................................................TCAGCAAAGTGCCAGGACAAGC................... 22 3 4 0.25 1 0 0 1 0 0 0 0 0
...........................................................................................................GGATGTTGGCTAGCC...................................................... 15 1 6 0.17 1 0 0 0 0 1 0 0 0
........TGGTGGGCGCGGTAGTTAACG................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0
.......................................................................................................................................TCAGCAAAGTGCCAGGACAA..................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0
..........................................................................................................................................GCAAAGTGCCAGGACAAG.................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0
.........................................................................................................................................AGCAAAGTGACAGGACAAGC................... 20 3 11 0.09 1 0 0 0 0 0 0 0 1
................................................................................................................................................................AGTCACCTCTTATAG. 15 1 13 0.08 1 1 0 0 0 0 0 0 0
......................................................................TGAGCGAATGTGTAGTA......................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................................................GCAAAGTGCCAGGACAA..................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0
.......................................................................................................................................TTAGCAAAGTGACAGGA........................ 17 2 15 0.07 1 0 0 0 0 0 1 0 0
....................................................................................................................................................TCGAGAAGCTTGAGACA........... 17 2 18 0.06 1 0 0 0 1 0 0 0 0
..................................................................................................................................................CCACGAGAAGCGTGAGA............. 17 2 19 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................................................................ACAAAGTGCCAGGACAAGC................... 19 3 19 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................................GGAAGTTGGTGAGCCTGTG.................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:50 AM