ID:

dsi_30702

 Coordinate:

x:15055815-15055956 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.8 -16.6 -16.4

Flybase annnotation

five_prime_UTR [x_15055957_15056041_-]; exon [x_15055957_15056041_-]; five_prime_UTR [x_15055394_15055814_-]; exon [x_15055181_15055814_-]; intron [x_15055815_15055956_-]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+
mature
star
  1. 3l:8556111-8556134 -
  2. 3l:8936485-8936508 -
  3. 3r:2181995-2182018 +
  4. 3r:6716035-6716058 +
  5. dsi_7117  3r:11661243-11661266 -
  6. x:2067884-2067907 -
  7. dsi_30702  x:15055867-15055890 -
  8. x:17714607-17714630 +
  9. dsi_32051  node_65696:708-731 +

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCAGGTACACATGAGCCTGCTGCTTTGCCATTTCCTAAAGACTTAAACTGGTAAATTTACAATACAAATAAATATATATATATATATGTATATATATAAATATACAAGAATATATATATAGATATATATATATATATATATATATATATATGTATGTATATATAATTATTCATATGAATTCGGAAACAATAGAATAGCTGAATACCTACCACGGCGAAAACAAAATCTTCAGAAGAATAAAA
********************************************************************************************************************.((((.(((((((((((((((((((....))))))))))))))))))).))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
..............................................................................................................................................................................................................................AAATCTCCAGTAGAACAAAA 20 3 15 1.93 29 2 2 0 6 0 1 0 15 1 0 0 2
.........................................................................................................................................................................................................ATACCTACCACGGCGAAAAC..................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AACAATAGAATAGCTGAATACCTACCACGG............................ 30 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................AAACTGAATAGCTGAATACCTACCACGGC........................... 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGAATTCGGAAACAATAGAATAGCT........................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACTGAATAGCTGAATACCTACCACGGC........................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAATTCGGAAACAATAGAATAGCTG.......................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................CCTAAAGACTTAAACTGGTA............................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAAATCTCCAGTAGAACAAA. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTATGTATATATAATTAT......................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................GTATGTATATATAATTATT........................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................AATACCTACCACGGCGAAAAC..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAACAAAATCTTCAGTAGAACAAAA 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................GCCATTTCTTAAAGACTTAAACTGA............................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAACAAAATCTTCAGAAGA...... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AATTCGGAAACAATAGAATAGCT........................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACTGAATAGCTGAATACCTACCACGG............................ 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................ATTCATATGAATTCGGAAACAATAGAAT............................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AATAGAATAGCTGAATACCTACCACGG............................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTTTGAATTCGGAAACAATAGAA................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGGAAACAATAGAATAGC............................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATTCGGAAACAATAGAATAGCTGAAT....................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAACAATAGAATAGCTGAAT....................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AATAGAATAGATGAATACCTACCACGG............................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TATGAATTCGGAAACAATAGAAT............................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACCTACCACGGCGAAAACA.................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................AAGACTTAAACTGGTAAATTTACAATA.................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCGAAAACAAAATCTTCAGA......... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCGAAAACAAAATCTTCAGAAGAA..... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................ACTGAATAGCTGAATACCTACCACGGC........................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AATTCGGAAACAATAGAATAGCC........................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTCGGAAACAATAGAATAGCTGA......................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TATGACTTCGGAAACA...................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAAATCTCCAGTAGAACAA.. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AATCTCCAGTAGAATAAAA 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TACAATACAAATAAATTTATTTG.................................................................................................................................................................. 23 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TATAGATATATATATATATATATAGA.................................................................................................... 26 1 20 0.20 4 0 0 0 1 0 1 0 2 0 0 0 0
...........................................................................................................................................................................................................................ACAAAATCTCCAGTAGAAC.... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 3
....................................................................................................................TATAGATATATATATATATATATA...................................................................................................... 24 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................CCTCTCACGGCGAAAAC..................... 17 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................CCCTCTCACGGCGAAAACA.................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................CCTACCACGTTGAAAA...................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................ATATAGATATGTATGTATATATAAGA........................................................................... 26 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGTCCATGTGTACTCGGACGACGAAACGGTAAAGGATTTCTGAATTTGACCATTTAAATGTTATGTTTATTTATATATATATATATACATATATATATTTATATGTTCTTATATATATATCTATATATATATATATATATATATATATATACATACATATATATTAATAAGTATACTTAAGCCTTTGTTATCTTATCGACTTATGGATGGTGCCGCTTTTGTTTTAGAAGTCTTCTTATTTT
*************************************************************************.((((.(((((((((((((((((((....))))))))))))))))))).))))******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................TATTCTTAAGCCTTTG....................................................... 16 1 3 0.33 1 1 0 0 0 0
.........................................................ATGTTCTGGTTATTTATATATATGT................................................................................................................................................................ 25 3 5 0.20 1 0 1 0 0 0
....................................................................................................................................................................................................CGGCTTATGGATGGCGC............................. 17 2 7 0.14 1 0 0 1 0 0
..............................................................................................................................................................................................................ATGGTGCCGGTTTTG..................... 15 1 19 0.11 2 2 0 0 0 0
.....................................TTCTGAACTTGAACATT............................................................................................................................................................................................ 17 2 20 0.10 2 0 0 0 2 0
......GGTGTTCTCGGACCACGAA......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
............................................................................................................................ATATATATATATATATATATATATATACAT........................................................................................ 30 0 20 0.05 1 0 1 0 0 0
......................................................................................................ATGTTCTTATATATATG........................................................................................................................... 17 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:15055765-15056006 - dsi_30702 TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTCC---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TACA---AATA--------------------A---------------A-----------------------TATATATATATATATGTATATAT---------------------AT--AAATA----TACAAGAATATATATATAG-ATATA----TATATATATA------TATATA----------------------------------TAT--------ATATATG----------TATGTATATA--TAATTATT-----------------------CATATGAATTCGGAA----------------------------------ACAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AA----A-------CAAAATCT----------------TCAGA-AG---AATAAAA
droSec2 scaffold_183:7925-8176 - TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTCT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATATGTATATAT---------------------AT--AAATA----TACAAGAATATATATATAG-ATATA----TATATATATATA------TAT--------------------ATATATATATATATATGT--------ATGTATG--------------TATATA--TAATTATT-----------------------CATATGAATTCGGAA----------------------------------AAAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AA----A-------CAAAATCT----------------TCAGA-AG---AATAAAA
dm3 chrX:15883248-15883474 - TCAGG--TACACATGAGCCTGCTCC-TTCTCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATGTATAT----ATAT---------------------AT--AAATA----TACA--------------AA-----TATA----------------TATATAG------------ATAT------------------ATATGTATATATATATG--------------TATATA--TAATTATT-----------------------CATATGAATTCGGAAA---------------------------------AAAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AAATAAA-------CAAAATCT----------------TCAGC-AA---AATAAAA
droEre2 scaffold_4690:11166952-11167176 + TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTC--TAAAGAC-------------------TTAAGCTGGTA-------AATTTACA---A-TACA---AATA--------------------A---------------A-----------------------TATATATATATATAT------AT---------------------ATATA--TAAATATACA---------------------TATA--------TATATATATATATAG------------A--------------------TAT--------ATATATG--------------TATATATTTAATTATT-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATACCTAACACGG-----CGA---AAATAAA-------CA-AAACT----------------TCAGC-AA---AA-AACA
droYak3 X:10071879-10072101 - TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTT--TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TAAATATATATATAT------AT---------------------AT--AAATA----TACA--------------AA-----TATA--------TATATATATATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTATT-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATACTTACCACGG-----CAA---AAATAAA-------CAAAAACT----------------TCAGC-AA---AATAACA
droEug1 scf7180000409218:18003-18223 - TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTTTT--AAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATAT------AT---------------------AT--ATATA----CTTA--------------AT-----TATA--------TATATCTCTATATA----------------------------------TAT--------GTATATG--------------TATATATTTAATTATT-----------------------CATATAATAACGGAA----------------------------------ATAATAGAA----------TAGCTGAATATTTACCAAGG-----CGG---AAATCAA-------CCAATACT----------------TCAGC-AA---AATA--A
droBia1 scf7180000302126:1135195-1135410 + TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTTTT--TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---ATCA--------------------A---------------A-----------------------TATATATGTATAT--------AT---------------------AT--AAATA----CGTA--------------AT-----TCTA----------------TTTATA----------------------------------TAT--------ATATATG--------------TATACATTTAATTATT-----------------------CATATAAGAACGGAA----------------------------------AGCATAGAA----------TAGCTGAAAATTTACCAAGG-----CAAGGAAATCCAA-------CCAATACT----------------TCAGC-AA---AATAAGA
droTak1 scf7180000415169:31503-31725 + TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTTATTAAAGAC-------------------TTAAACTGGTA-------AATTTACA---T-TATA---AATA--------------------T---------------A---------------------------TGTATATATAT------AT---------------------AT--AAATA----CGTA--------------AA-----TTTA--------TTTA----TATATA----------------------------------TAT--------ATATATG--------------TATATAT-TAATTATA-----------------------CATATTATAACGGAA-----------------------------------AAATAGAA----------TAGCTGAATAATAACCAAGG-----CAA---AGATCCA-ATATACCCAATACT----------------TCAGC-AA-AAAATAACA
droEle1 scf7180000491277:41515-41707 + TCAGG--TACACATGAGCCTGTTGT-TTTGCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATAT------------AT---------------------AT--AAATA----CATA--------------TA-----TATA----------------TATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTA--------------------------------------AA----------------------------------GAAATAGAA----------TAGCTGAATATTTACCAAGG-----CAA---AATTCAA-------CCAAAGCT----------------TCAGC-AA---AATAACA
droRho1 scf7180000777033:131623-131841 + TCAGG--TACACATGAGCCTGTTGTTTTTGCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATGT------AT---------------------AT--AAATA----CATA--------------AA-----TATA--------TATA----TATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTATT-----------------------CATTAAATGACTGAA----------------------------------GGAATAGAA----------TAGCTGAATATTTACCAAGG-----CGA---AAATCAA-------CCAAAACT----------------TCAGA-AA---AATAACA
droFic1 scf7180000454038:1155313-1155524 - TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTATT---TAAAGAC-------------------TTGAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATAT----------AT---------------------AT--AAATA----CATA--------------GT-----TATA----------------TATATAG------------A--------------------TAT--------ATATATG--------------TATATATTTAATTATT-----------------------CATACAATAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATATTTACCAAGG-----CAA---AAATCAA-------CCAGAACT----------------TCAGC-TT---AACGACA
droKik1 scf7180000302230:15376-15630 - TCAGG--TACACATGAGCCTGTTAT-TTTGTTATATTTA----ACAACAACAGCAGCAACAACAACAGCAAATTGGTA-------AATTAAAA---AAAGCC---ACCAAATATATCCGGAATAATTAATTGGAA--AACGTAAAA-----------------------T------AT------------AT---------ATACACATATATGT-------------------------------------ATG----------------CCCATA----------------------------------TGC--------ATATATG--------------TATATATTTAATTATT-----------------------CATTCAA-AAAGCAC-----CGATTAGGAGCGCTGAAAAA---------GCA----------------------AATATTCACCGAG--------A---AG----GCGAACG-CGAAAGC---------------------G-AA---AGCGAAG
droAna3 scaffold_13047:144950-145118 + TAT-----------------------------------------------------------------------------------AT------------------------------------------------------------------------------------TTATATATATATATATATAT---ATAAATAT----------AT--ATATA----TATA--------------TA-----TATA----------------TATATAA----------------------------------AT--------ATATATA--------------TATATATATA-----------------------------------C-AAATTAT-----TTAATAGTTATGCTAAAAAATTATTTAAAGTGAATGAT----------ATGAAAAATATTTGCATGCG-----CCA---CAACAAA-------CGAA---------------------CGGG-AA---AATAGAA
droBip1 scf7180000393827:1033-1215 + TAAA---TATAAATATAAATA------------------------GAA-------------------ATATAAAT---------------------A-TAAA---TATA--------------------A------------------------------------------ATATAAATAT--------AAATA----T-AA----------AT--A--------TAAA----TATAAATATAA-ATATA----AA------TATA------AAT--------------ATAAATATAAATATA------A----------ATATAAATATAAATATAAATATAAATA--TAAATATA-----------------------------AAT------------------------------------------------------------------ATAAATATAAATA-----TAA---ATATAAA-------TA-----T----------------AAATA-TA---AATATAA
dp5 2:25228585-25228811 + TCAGG--TACACGTGAGCCGAATAC-TTTGCCGTGGC----AAAAGAC-------------------TT---CTGATAATTACAAAAATTACA---A-AACACCAATTA---------------ATTATAACAAA--AATATAAAA-----------------------A-----------------------------AAATACATTTAAATAT----ATA----CTAA-------------------------------------------AATAA--------------------------------------------TTAC-AG--------------------------TATA-----------------------TATATTAATCTGGAAAAAATCAG---AGAATACTGAA------------AAA------------------------AACGTA---CAT-----TAA---AAATAAA-ATATAC-----ACATCCCAAAATCATTGTTGGTGC-GA------AAAA
droPer2 scaffold_0:5299709-5299905 + AAAAA--TATAAATGTAAATGATAG-AAATACAAA------------------------------------------A-------TATTTTTA---A-ATAA---AAAA--------------------TATATAAAAATAAAAAA-----------------------TATATATATATGTAT------AT---------------------GT------------ATA-----------------------TG--------TATATATATATATA----------------------------------TAT--------ATATATA--------------TATAAAATGAAAAATA-----------------------TATAGTAAAACA-------------------------------------AAAATAAAA----------TATAAAAAT---AGCCAAAA-----TAA---AAATGT-----------AAAAT----------------ACAAA-AT---TAAATAA
droWil2 scf2_1100000004590:1152767-1152963 - T-----------------------------------------ACAAAT-------------------TAAAACAGATA-------TATATATATGTA-TATA---CATA--------------------T------------------------------------------ATATATATAT--------AT---------------------GT--ATATA----CATA--TATATATATATAT-ATATA----TA------TATA------TAT--------------ATATATGTATATACATATA--TAT--------ATATATA--------------TATATATATATATATT-----------------------TACATAAATGCAAAA----------------------------------GTCCAAGAA----------TAAC--------AACAACAA-----CAA---CAGCAAA-------CAAA-ACT--------------------A-AA---GATAAGA
droVir3 scaffold_12928:2569731-2569938 - CATTTTGTTTAAACATAGCTT--------------------GAGAAAT-------------------T------------------ATGTATA---A-TATG---TATG--------------------T---------------ATTAT----------------------TTATGTATATATATATATAA---ATATATATACATATATATATATATATA---------------------------------------------------TATAAATATATATATATATGC------------------ATACATATATATATATG--------------TATGTATTATATTAAA-----------------------CATGTAGTAT--AA-------------------------------------------TTTATATAGCATAG----------------------C------ATTAAA-------AAAAAATT----------------GGCGCAAA---AAAAAAG
droMoj3 scaffold_6496:2390983-2391239 + TCAAG--TGCATATGTAGCTA-----------------------------------------------TAATCTAAAA-------TATGTTTA---A-TATA---TATA--------------------T---------------A-----------------------TATATATATATATAT------AT---------------------AT--ATATA----TATA--------------TA-----TATA--------TATA----TATAT--------------ATATATATATATA--------T----------ATATATATATATACATATGTATATATA--TAGTTGTGAACTTCGATGTCACTCAAAAA----TCGAT-TCAACTG-----CAATACAACGCCTTGCGCAA---------ACAACAAAT----------TAGC-GAGTGCTATCCATAGTTTTCCAA---AA----A-------CAAATTCT----------------AAAGT-TTAATAATGCCA
droGri2 scaffold_14853:1180082-1180301 - TCAAA--TGCAAATGCAACTGATAT-TTGTATATGTATG--TAACTAT-------------------ATAAAGTGTG------------TACA------------CATG--------------------T---------------ATAGTTTACACACACACACGTAAATATATATATATATAT------AT---------------------ATATA--TA----TATA--------------T-------ATATA------TATA----TATATAT--------------A------------------TAT--------ATATATA--------------TATATA--TTAT---G----TG------T-----ATCTTTATATGTATTTCGAT------------------------A---------ACA--AAATTCGCT-----TG---GCACACCAATAACAA-----AAA---GA----A-------CAAAATCT----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTCC---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TACA---AATA--------------------A---------------A-----------------------TATATATATATATATGTATATAT---------------------AT--AAATA----TACAAGAATATATATATAG-ATATA----TATATATATA------TATATA----------------------------------TAT--------ATATATG----------TATGTATATA--TAATTATT-----------------------CATATGAATTCGGAA----------------------------------ACAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AA----A-------CAAAATCT----------------TCAGA-AG---AATAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTACCACGG-----CGA---AA----A-------C.........................................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------ACAATAGAA----------TAGCTGAATACCTACCACGG-----..............................................................3011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGAATTCGGAA----------------------------------ACAATAGAA----------TAGCT..................................................................................2511.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GAATTCGGAA----------------------------------ACAATAGAA----------TAGCTG.................................................................................2511.00100100000000000000
....................................CC---TAAAGAC-------------------TTAAACTGGTA-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................G----------TATGTATATA--TAATTAT...................................................................................................................................................................................1811.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................G----------TATGTATATA--TAATTATT-----------------------...........................................................................................................................................................1911.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCTACCACGG-----CGA---AA----A-------C.........................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----A-------CAAAATCT----------------TCAGA-AG---A......1911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGAA----------------------------------ACAATAGAA----------TAGCT..................................................................................2311.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ATT-----------------------CATATGAATTCGGAA----------------------------------ACAATAGAA----------T......................................................................................2811.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAA----------TAGCTGAATACCTACCACGG-----..............................................................2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGGAA----------------------------------ACAATAGAA----------TAGC...................................................................................1811.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGAA----------------------------------ACAATAGAA----------TAGCTGAAT..............................................................................2611.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAA----------------------------------ACAATAGAA----------TAGCTGAAT..............................................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TATGAATTCGGAA----------------------------------ACAATAGAA----------T......................................................................................2311.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACCACGG-----CGA---AA----A-------CA........................................1911.00100000000001000000
...........................................AAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-----CGA---AA----A-------CAAAATCT----------------TCAGA-............2111.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----CGA---AA----A-------CAAAATCT----------------TCAGA-AG---AA.....2411.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGAA----------------------------------ACAATAGAA----------TAGCC..................................................................................2311.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAA----------------------------------ACAATAGAA----------TAGCTGA................................................................................2311.00100100000000000000
................................................................................................................................................................................................................................................TATAG-ATATA----TATATATATA------TATA......................................................................................................................................................................................................................................................................2490.11100000001000000000
droSec2
TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTCT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATATGTATATAT---------------------AT--AAATA----TACAAGAATATATATATAG-ATATA----TATATATATATA------TAT--------------------ATATATATATATATATGT--------ATGTATG--------------TATATA--TAATTATT-----------------------CATATGAATTCGGAA----------------------------------AAAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AA----A-------CAAAATCT----------------TCAGA-AG---AATAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATACCTACCACGG-----CGA---AA----A-------CA........................................2311.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................CATATGAATTCGGAA----------------------------------AAA.......................................................................................................1811.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----A-------CAAAATCT----------------TCAGA-AG---AAT....2111.0010010
dm3
TCAGG--TACACATGAGCCTGCTCC-TTCTCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATGTATAT----ATAT---------------------AT--AAATA----TACA--------------AA-----TATA----------------TATATAG------------ATAT------------------ATATGTATATATATATG--------------TATATA--TAATTATT-----------------------CATATGAATTCGGAAA---------------------------------AAAATAGAA----------TAGCTGAATACCTACCACGG-----CGA---AAATAAA-------CAAAATCT----------------TCAGC-AA---AATAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................................................................................................................................................................................................................................................................................................................................TATGAATTCGGAAA---------------------------------AAAAAT....................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TAG------------ATAT------------------ATATGTATATATATA..................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TATGTATATATATATG--------------TATATA--..........................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................A---A-TATA---AATA--------------------A---------------A-----------------------TATATATA........................................................................................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T------------------ATATGTATATATATATG--------------TA................................................................................................................................................................................................20180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................A---------------A-----------------------TATATATATGTATAT----ATAT---------------------A...................................................................................................................................................................................................................................................................................................................................22190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TAT------------------ATATGTATATATATATG--------------T.................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATATGTATAT----ATAT---------------------AT--AAATA----.......................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TATGTATATATATATG--------------TATAT.............................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TATATATATG--------------TATATA--TAAT......................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATGTATAT----ATAT---------------------AT--AAATA----T......................................................................................................................................................................................................................................................................................................................20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T------------------ATATGTATATATATATG--------------TAT...............................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TATAT----ATAT---------------------AT--AAATA----TACA--------------.....................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATATATATGTATAT----ATAT---------------------AT--AA..............................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TATATGTATAT----ATAT---------------------AT--AAA.............................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATGTATAT----ATAT---------------------AT--AAATA----.......................................................................................................................................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ATGTATATATATATG--------------TATA..............................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................A-----------------------TATATATATGTATAT----ATAT---------------------AT--A...............................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GTATAT----ATAT---------------------AT--AAATA----T......................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................A--------------------A---------------A-----------------------TATATATATGTATAT----ATAT---------------------....................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................T------------------ATATGTATATATATATG--------------..................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTC--TAAAGAC-------------------TTAAGCTGGTA-------AATTTACA---A-TACA---AATA--------------------A---------------A-----------------------TATATATATATATAT------AT---------------------ATATA--TAAATATACA---------------------TATA--------TATATATATATATAG------------A--------------------TAT--------ATATATG--------------TATATATTTAATTATT-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATACCTAACACGG-----CGA---AAATAAA-------CA-AAACT----------------TCAGC-AA---AA-AACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....G--TACACATGAGCCTGCTGT-TTTGCCATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..AGG--TACACATGAGCCTGCTGT-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.................................................................................................................................................................................................................................................................................................................................................................ATTATT-----------------------CATATGAAAACGGAA----------------------------------AAAAT.....................................................................................................2611.0010000100
.......TACACATGAGCCTGCTGT-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA----------TAGCTGAATACCTAACACGG-----C.............................................................2511.0011000000
..............................................................................................................................................................................................................................................................................................................................................................TTAATTATT-----------------------CATATGAAAACGGAA----------------------------------A.........................................................................................................2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................AACGGAA----------------------------------AAAATAGAA----------TAGCTGA................................................................................2311.0011000000
.......................GT-TTTGCCATTTTTC--TAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................CATATGAAAACGGAA----------------------------------AAAATAGAA----------T......................................................................................2511.0010000100
droYak3
TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTT--TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TAAATATATATATAT------AT---------------------AT--AAATA----TACA--------------AA-----TATA--------TATATATATATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTATT-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATACTTACCACGG-----CAA---AAATAAA-------CAAAAACT----------------TCAGC-AA---AATAACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAA----------TAGCTGAATACTTACCACGG-----C.............................................................2713.00300200010000
...............................................................................................................................................................................................................................................................................................................................................................................................ATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGCT..................................................................................2812.00200100010000
...................................TTTT--TAAAGAC-------------------TTAAACTGGTA-------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................T-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------TAGC...................................................................................2911.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................ATT-----------------------CATATGAAAACGGAA----------------------------------AAAATAGAA----------T......................................................................................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAA----------TAGCTGAATACTTACCACGG-----CA............................................................2711.00101000000000
...GG--TACACATGAGCCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.........CACATGAGCCTGCTGT-TTTGCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------TAGCTGAATACTTACCACGG-----..............................................................2311.00100100000000
droEug1
TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTTTT--AAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATAT------AT---------------------AT--ATATA----CTTA--------------AT-----TATA--------TATATCTCTATATA----------------------------------TAT--------GTATATG--------------TATATATTTAATTATT-----------------------CATATAATAACGGAA----------------------------------ATAATAGAA----------TAGCTGAATATTTACCAAGG-----CGG---AAATCAA-------CCAATACT----------------TCAGC-AA---AATA--ASizeHit CountTotal NormTotal
No Reads
droBia1
TCAGG--TACACATGAGCCTGCTGC-TTTGCCATTTTTT--TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---ATCA--------------------A---------------A-----------------------TATATATGTATAT--------AT---------------------AT--AAATA----CGTA--------------AT-----TCTA----------------TTTATA----------------------------------TAT--------ATATATG--------------TATACATTTAATTATT-----------------------CATATAAGAACGGAA----------------------------------AGCATAGAA----------TAGCTGAAAATTTACCAAGG-----CAAGGAAATCCAA-------CCAATACT----------------TCAGC-AA---AATAAGASizeHit CountTotal NormTotal
No Reads
droTak1
TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTTTTTATTAAAGAC-------------------TTAAACTGGTA-------AATTTACA---T-TATA---AATA--------------------T---------------A---------------------------TGTATATATAT------AT---------------------AT--AAATA----CGTA--------------AA-----TTTA--------TTTA----TATATA----------------------------------TAT--------ATATATG--------------TATATAT-TAATTATA-----------------------CATATTATAACGGAA-----------------------------------AAATAGAA----------TAGCTGAATAATAACCAAGG-----CAA---AGATCCA-ATATACCCAATACT----------------TCAGC-AA-AAAATAACASizeHit CountTotal NormTotal
No Reads
droEle1
TCAGG--TACACATGAGCCTGTTGT-TTTGCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATAT------------AT---------------------AT--AAATA----CATA--------------TA-----TATA----------------TATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTA--------------------------------------AA----------------------------------GAAATAGAA----------TAGCTGAATATTTACCAAGG-----CAA---AATTCAA-------CCAAAGCT----------------TCAGC-AA---AATAACASizeHit CountTotal NormTotal
No Reads
droRho1
TCAGG--TACACATGAGCCTGTTGTTTTTGCCATTTTT---TAAAGAC-------------------TTAAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATATATGT------AT---------------------AT--AAATA----CATA--------------AA-----TATA--------TATA----TATATAG----------------------------------AT--------ATATATG--------------TATATATTTAATTATT-----------------------CATTAAATGACTGAA----------------------------------GGAATAGAA----------TAGCTGAATATTTACCAAGG-----CGA---AAATCAA-------CCAAAACT----------------TCAGA-AA---AATAACASizeHit CountTotal NormTotal
No Reads
droFic1
TCAGG--TACACATGAGCCTGCTGT-TTTGCCATTATT---TAAAGAC-------------------TTGAACTGGTA-------AATTTACA---A-TATA---AATA--------------------A---------------A-----------------------TATATATATAT----------AT---------------------AT--AAATA----CATA--------------GT-----TATA----------------TATATAG------------A--------------------TAT--------ATATATG--------------TATATATTTAATTATT-----------------------CATACAATAACGGAA----------------------------------AAAATAGAA----------TAGCTGAATATTTACCAAGG-----CAA---AAATCAA-------CCAGAACT----------------TCAGC-TT---AACGACASizeHit CountTotal NormTotal
No Reads
droKik1
TCAGG--TACACATGAGCCTGTTAT-TTTGTTATATTTA----ACAACAACAGCAGCAACAACAACAGCAAATTGGTA-------AATTAAAA---AAAGCC---ACCAAATATATCCGGAATAATTAATTGGAA--AACGTAAAA-----------------------T------AT------------AT---------ATACACATATATGT-------------------------------------ATG----------------CCCATA----------------------------------TGC--------ATATATG--------------TATATATTTAATTATT-----------------------CATTCAA-AAAGCAC-----CGATTAGGAGCGCTGAAAAA---------GCA----------------------AATATTCACCGAG--------A---AG----GCGAACG-CGAAAGC---------------------G-AA---AGCGAAGSizeHit CountTotal NormTotal
No Reads
droAna3
TAT-----------------------------------------------------------------------------------AT------------------------------------------------------------------------------------TTATATATATATATATATAT---ATAAATAT----------AT--ATATA----TATA--------------TA-----TATA----------------TATATAA----------------------------------AT--------ATATATA--------------TATATATATA-----------------------------------C-AAATTAT-----TTAATAGTTATGCTAAAAAATTATTTAAAGTGAATGAT----------ATGAAAAATATTTGCATGCG-----CCA---CAACAAA-------CGAA---------------------CGGG-AA---AATAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................AATAT----------AT--ATATA----TATA--------------TA-----TATA----------------TATA......................................................................................................................................................................................................................................................................26200.051010000
......................................................................................................................................................................................................AATAT----------AT--ATATA----TATA--------------TA-----TATA----------------TA........................................................................................................................................................................................................................................................................24200.051010000
droBip1
TAAA---TATAAATATAAATA------------------------GAA-------------------ATATAAAT---------------------A-TAAA---TATA--------------------A------------------------------------------ATATAAATAT--------AAATA----T-AA----------AT--A--------TAAA----TATAAATATAA-ATATA----AA------TATA------AAT--------------ATAAATATAAATATA------A----------ATATAAATATAAATATAAATATAAATA--TAAATATA-----------------------------AAT------------------------------------------------------------------ATAAATATAAATA-----TAA---ATATAAA-------TA-----T----------------AAATA-TA---AATATAASizeHit CountTotal NormTotal
No Reads
dp5
TCAGG--TACACGTGAGCCGAATAC-TTTGCCGTGGC----AAAAGAC-------------------TT---CTGATAATTACAAAAATTACA---A-AACACCAATTA---------------ATTATAACAAA--AATATAAAA-----------------------A-----------------------------AAATACATTTAAATAT----ATA----CTAA-------------------------------------------AATAA--------------------------------------------TTAC-AG--------------------------TATA-----------------------TATATTAATCTGGAAAAAATCAG---AGAATACTGAA------------AAA------------------------AACGTA---CAT-----TAA---AAATAAA-ATATAC-----ACATCCCAAAATCATTGTTGGTGC-GA------AAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................TTGCCGTGGC----AAAAGAC-------------------TT---CTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
............................TGCCGTGGC----AAAAGAC-------------------TT---CTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................GAC-------------------TT---CTGATAATTACAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................AGAC-------------------TT---CTGATAATTACAAAAATTACA---A-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..............................................AC-------------------TT---CTGATAATTACAAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----ACATCCCAAAATCATTGTTGGT...............2311.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCCAAAATCATTGTTGGT...............2211.0010100000000
.......................................................................................................................................................................................................AAATACATTTAAATAT----ATA----CTAA-------------------------------------------AA......................................................................................................................................................................................................................................................................2511.0010001000000
........ACACGTGAGCCGAATAC-TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..AGG--TACACGTGAGCCGAATAC-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................ACAAAAATTACA---A-AACACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................TGCCGTGGC----AAAAGAC-------------------TT---CTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
AAAAA--TATAAATGTAAATGATAG-AAATACAAA------------------------------------------A-------TATTTTTA---A-ATAA---AAAA--------------------TATATAAAAATAAAAAA-----------------------TATATATATATGTAT------AT---------------------GT------------ATA-----------------------TG--------TATATATATATATA----------------------------------TAT--------ATATATA--------------TATAAAATGAAAAATA-----------------------TATAGTAAAACA-------------------------------------AAAATAAAA----------TATAAAAAT---AGCCAAAA-----TAA---AAATGT-----------AAAAT----------------ACAAA-AT---TAAATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T-----------------------------------------ACAAAT-------------------TAAAACAGATA-------TATATATATGTA-TATA---CATA--------------------T------------------------------------------ATATATATAT--------AT---------------------GT--ATATA----CATA--TATATATATATAT-ATATA----TA------TATA------TAT--------------ATATATGTATATACATATA--TAT--------ATATATA--------------TATATATATATATATT-----------------------TACATAAATGCAAAA----------------------------------GTCCAAGAA----------TAAC--------AACAACAA-----CAA---CAGCAAA-------CAAA-ACT--------------------A-AA---GATAAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC--------AACAACAA-----CAA---CAGCAA..................................................21200.05100010
droVir3
CATTTTGTTTAAACATAGCTT--------------------GAGAAAT-------------------T------------------ATGTATA---A-TATG---TATG--------------------T---------------ATTAT----------------------TTATGTATATATATATATAA---ATATATATACATATATATATATATATA---------------------------------------------------TATAAATATATATATATATGC------------------ATACATATATATATATG--------------TATGTATTATATTAAA-----------------------CATGTAGTAT--AA-------------------------------------------TTTATATAGCATAG----------------------C------ATTAAA-------AAAAAATT----------------GGCGCAAA---AAAAAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................ATACATATATATATATATATA---------------------------------------------------TATAAAT.................................................................................................................................................................................................................................................................28140.071000000000000001000000000000000000000000000000000000000000000000
droMoj3
TCAAG--TGCATATGTAGCTA-----------------------------------------------TAATCTAAAA-------TATGTTTA---A-TATA---TATA--------------------T---------------A-----------------------TATATATATATATAT------AT---------------------AT--ATATA----TATA--------------TA-----TATA--------TATA----TATAT--------------ATATATATATATA--------T----------ATATATATATATACATATGTATATATA--TAGTTGTGAACTTCGATGTCACTCAAAAA----TCGAT-TCAACTG-----CAATACAACGCCTTGCGCAA---------ACAACAAAT----------TAGC-GAGTGCTATCCATAGTTTTCCAA---AA----A-------CAAATTCT----------------AAAGT-TTAATAATGCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACGCCTTGCGCAA---------ACAACAA...................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAACTG-----CAATACAACGCCTTGCGCAA---------AC........................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TACAACGCCTTGCGCAA---------ACAAC.....................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................TCAACTG-----CAATACAACGCCTTGCGCAA---------A.........................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................TTGTGAACTTCGATGTCACTC..................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................A--------T----------ATATATATATATACATATGT...................................................................................................................................................................................................22200.051000010
.......................................................................................................................................................................................................................................................................................................................T----------ATATATATATATACATATGTA..................................................................................................................................................................................................22200.051000010
droGri2
TCAAA--TGCAAATGCAACTGATAT-TTGTATATGTATG--TAACTAT-------------------ATAAAGTGTG------------TACA------------CATG--------------------T---------------ATAGTTTACACACACACACGTAAATATATATATATATAT------AT---------------------ATATA--TA----TATA--------------T-------ATATA------TATA----TATATAT--------------A------------------TAT--------ATATATA--------------TATATA--TTAT---G----TG------T-----ATCTTTATATGTATTTCGAT------------------------A---------ACA--AAATTCGCT-----TG---GCACACCAATAACAA-----AAA---GA----A-------CAAAATCT----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:02 PM