ID:

dsi_30695

 Coordinate:

2r:5832812-5832870 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.8 -6.4 -6.0 -5.9

Flybase annnotation

CDS [2r_5832665_5832811_-]; exon [2r_5832480_5832811_-]; CDS [2r_5832871_5833101_-]; exon [2r_5832871_5833101_-]; intron [2r_5832812_5832870_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
TGCCGCCTCACCTGCTCCAGGTCATCCTCAACAAGGACACACCGCTATCGGTGAGTGTTCTCAGTGCCTCAAGAGCTAACGCCCGTAACCTTACCTTGTTCTGTTTCAGTGTGAACCCACTCTGCTGCCGGAACCCAACCACGTGATGCTGAACCACTT
**************************************************.......((..(((.((.....(((...((....))...))).....)).)))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M025
embryo
 O001
Testis
 O002
Head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................AACCCAACCACGTGATGCT......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AACCACGTGATGCTGAACC.... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................CCTCAACAAGGACACACCGC.................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................ATCCTCAACAAGGACACACCGCTATCGTG........................................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CACTCTGCTGCCGGAACCCA...................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................GTCATCCTCAACAAGGACAC....................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................GTGAGTGTTCTCAGTGCCT.......................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................CACTCTGCTGCCGGAACCCAAA.................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................GCCGGAACCCAACCACGTGA............. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................AACCACGTGATGCTGAACCA... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............TGCTCCAGGTCATCCTCAAC............................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................CAGTGTGAACCCACTCTGCTG................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TGCCGGAACCCAACCACGTG.............. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................GAACCCAACCACGTGATGCTGAAC..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................CTATCGGTGATTGTTCTCAG............................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................GGAACCCAACCACGTGATGCTGAACC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGAACACACTCTGCAGCCAG............................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0
..................................GGACAAACGGCTATTGGTGA......................................................................................................... 20 3 6 0.33 2 0 0 0 0 0 0 0 0 0 2
...............................................................................................................TGAACACACTCTGCAGCCAG............................ 20 3 11 0.18 2 0 0 0 0 0 0 0 0 2 0

Anti-sense strand reads

ACGGCGGAGTGGACGAGGTCCAGTAGGAGTTGTTCCTGTGTGGCGATAGCCACTCACAAGAGTCACGGAGTTCTCGATTGCGGGCATTGGAATGGAACAAGACAAAGTCACACTTGGGTGAGACGACGGCCTTGGGTTGGTGCACTACGACTTGGTGAA
**************************************************.......((..(((.((.....(((...((....))...))).....)).)))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
ACGGCGGAGTGGACGAGGTCCA......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................GTAGGAGTTGTTCCTGTGTGG.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CACTACGACTTGGTGAA 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................TTCCTGTGTGGCGATAGCCA........................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................GTCACGGAGTTCTCGATTGCG............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......GAGTGGGCGAGGTCCAGTAGG.................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................TGTGGCGATAGCCACTCACAA.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................GTCACGGAGTTCTCGATTGCGG............................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................TCGATTGTGGGCATTGGAATG................................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...............AGGTCCAGTAGGAGTTGTTC............................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............ACGAGGTCCAGTAGGAGTTGTT............................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................TGGAATGGAACAAGACAAAG.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.CGGCTGAGTGGACGAGG............................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 0 1 0 0
....................................................CTCACAAGTGTCAGGGAG......................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTGGTACACCACGAATTGGT... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................CGACGGGCTTGGGTTGGACCA............... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
.............................................................................TTGCGGGCATTGGACG.................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................GAACAAGAGAAAGTCACAGA............................................. 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 12:49 AM