ID:

dsi_30673

 Coordinate:

2r:5830464-5830713 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.7 -10.3 -10.3

Flybase annnotation

CDS [2r_5830270_5830463_+]; exon [2r_5830163_5830463_+]; CDS [2r_5830714_5830885_+]; exon [2r_5830714_5830885_+]; intron [2r_5830464_5830713_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGCAGTCGCAGTCACAGCTCCAGAACCCAGCCCACCGTCCAGACCTGCTGTGAGTGAGCGATAAGCGCCGTGAACGAGCCAAGTGTACCTGAACCCGCCCGCCTGCACCCTTTCGCGGCGTATTTTGTCTGCCTTTGATACGGACGACCACTCGTTCAATCAGAATCCATATGCATACATTACCGCGCGGCGATTAGATATGCCTCCTTGTACTTATTAGCCCGAAATAGCCCATTCATGCCGCTAACAAGTCGCGCTGCGCTGTAATCATTTCATTTGTGGCTTGTTCGTTCTTTCAGCTCGCTTTCCCGGCCAGCAGTAAGTTCGAAATTGTCTGTGCGGAGCCTTC
**************************************************************************.((...((((.(((...((.......((((.((........)))))).......))))).))))...)).************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...................................................................................................................................................................................................................................................................................................................................GTTCGAAATTGTCTGTGCGGA...... 21 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CGAAATTGTCTGTGCGGAGCC... 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
............................................................................................................................TTTGTCTGCCTTTGATACGG.............................................................................................................................................................................................................. 20 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTAAGTTCGAAATTGTCTGTGCGGAGCC... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AGTTCGAAATTGTCTGTGC......... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GAAATTGTCTGTGCGGAGCCTT. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................ACGAGCCAAGTGTACCTGAA................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TTCGAAATTGTCTGTGCGGAG..... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................AAATTGTCTGTGCGGAGCC... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TTCGAAATTGTCTGTGCGGAGC.... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTTCGAAATTGTCTGTGCGG....... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TTTGTCTGCCTTTGATACGGA............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................ACCACTCGTTCAATCAGAATC...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................TGTACCTGAACCCGCCCGCC...................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TACCTGAACCCGCCCGCCTGC................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TTCATGCCGCTAACAAGTCGCGC............................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTTGATCCGGACAACCAC...................................................................................................................................................................................................... 18 2 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTTGATACGGACAACCCC...................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ACTGCCTTTGATACTGAAGA.......................................................................................................................................................................................................... 20 3 8 0.25 2 0 0 0 0 0 0 0 0 2 0 0
.....................................................................................GTACCTGAAACCGAACGCCT..................................................................................................................................................................................................................................................... 20 3 8 0.25 2 0 0 0 0 0 0 0 0 2 0 0
............................................................................................................CCCTTTCACGGCGTA................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...................TCCTGAACCCAGCCC............................................................................................................................................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................GCCTTTGATACTGGCGA.......................................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................TACATTACCGCCCGTCGCT........................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................TATTGGGCCGAAATAGC...................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................TACTTTGTCTACCTTTGA................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................ACTGCCTTTGATACTGAAG........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................ACTGCCTTTGATACTGA............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................TGCCTTTGATACTGAGG........................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..............................TCACACTGTCCAGACCTG.............................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGCGTCAGCGTCAGTGTCGAGGTCTTGGGTCGGGTGGCAGGTCTGGACGACACTCACTCGCTATTCGCGGCACTTGCTCGGTTCACATGGACTTGGGCGGGCGGACGTGGGAAAGCGCCGCATAAAACAGACGGAAACTATGCCTGCTGGTGAGCAAGTTAGTCTTAGGTATACGTATGTAATGGCGCGCCGCTAATCTATACGGAGGAACATGAATAATCGGGCTTTATCGGGTAAGTACGGCGATTGTTCAGCGCGACGCGACATTAGTAAAGTAAACACCGAACAAGCAAGAAAGTCGAGCGAAAGGGCCGGTCGTCATTCAAGCTTTAACAGACACGCCTCGGAAG
**************************************************************************************************************************************************************************************************************.((...((((.(((...((.......((((.((........)))))).......))))).))))...)).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................................................................................................................CCGGTCGTCGTTCAAGCTTT................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TCCGAACAAGCAAGAAAGT................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................AAGCTTTAACAGACACGCCTC..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................TCTTGGGTCGGGTGGCAGGTC................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........CGTCAGTGTCGAGGTCTTG................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................TGTGGCAGGTCTGGACGAC........................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................ATTTGGGTGGCAGGTCTGGACGA............................................................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................CTTGGGCGGGCGGACGTGGGAA............................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................GAGGAACATGAATAATCGGGC............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGCAAGAAAGTCGAGCGAAAGGGC...................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...GTCAGCGTCAGTGTCGAGGT....................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCCTGGGGATCAAGTTAGTC.......................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CCTGGTGATCAAGTTAGTCA......................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...............GTCGCGGGCTTGGGTCGGG............................................................................................................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................CTTCTGGGGATCAAGTTAGTC.......................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................CGCAAGTCAGTATTAGGT.................................................................................................................................................................................... 18 3 20 0.25 5 0 0 0 0 1 0 4 0 0 0
.........................................................................................................................................................GCAAGTCAGTATTAGGT.................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................TTGGAAGGCGCCGCATA.................................................................................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.................................................................CGCGGCACTGGCTCGGTAG.......................................................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..............................CGAGTGGCTGTTCTGGACGA............................................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................GGGCGGCCGTGGGAAGG........................................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CGCCCCATAAAACCGCCGG........................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................GCAAGTCAGTATTAGGGA................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 12:45 AM