ID:

dsi_30665

 Coordinate:

2l:21708050-21708199 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -9.3 -9.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_30665  2l:21708105-21708127 +
  2. 2l:22047651-22047673 +
  3. 2r:370704-370726 +
  4. 2r:861230-861252 -
  5. 2r:1595225-1595247 -
  6. 2r:1644397-1644419 -
  7. 3l:23638635-23638657 +
  8. 3l:23945803-23945825 -
  9. 3l:24100906-24100928 +
  10. node_18749:435-457 -
  11. node_60024:4979-5001 +
  12. node_76011:5844-5866 -
  13. node_28136:156-178 +
star
  1. dsi_30665  2l:21708148-21708172 +
  2. 2r:861185-861209 -

Sense Strand Reads

TGATCGTGGTAAAATGAAACGAAATTACCTTGGCGTTTTTCAAGGGTCGTGATGGAGATAAATATATTCCACATATAAGTTAAAGTAAACGTTGGTTTATTTTCACAAGAAGGTAATTAGGACCGGTGGTCCGTCTTTATTTTGAAAAAAATCGGAAGTAAATTTAAAGTACAAAATTGGGTGATATTTATACCCCCCAGCACCGTCGCTGCTTCTGCTAGAGACAGTGCCAACTGCGTTGCTGGCTCTG
*********************************************************************************************************....(((((((...(((((...)))))....)))))))..............................***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M024
male body		 M053
female body
 SRR902009
testis
 GSM343915
embryo
 M025
embryo
.........................................................................................................CAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 23 0 13 8.85 115 0 48 25 1 34 5 0 0 1 1 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACA............................................................................. 25 0 2 8.00 16 10 0 0 6 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGG......................................................................................................................... 24 0 12 5.58 67 0 20 15 0 16 10 0 0 2 2 1 1
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGT........................................................................................................................ 25 0 12 4.83 58 0 15 31 1 9 2 0 0 0 0 0 0
...................................................................................................................................................AAAATCGGAAGTAAATTTAAAGTACA............................................................................. 26 0 2 3.50 7 6 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAAAAT......................................................................... 29 0 2 2.50 5 2 0 0 3 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTC....................................................................................................................... 26 0 12 2.25 27 0 6 19 0 2 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGAC............................................................................................................................... 18 0 13 2.00 26 0 1 7 0 0 0 18 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCGG............................................................................................................................ 26 0 13 2.00 26 20 0 0 6 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 28 0 13 1.85 24 20 0 0 4 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAAAATT........................................................................ 30 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGAC............................................................................................................................... 23 0 13 1.38 18 13 0 0 5 0 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 24 0 13 1.15 15 14 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................ATCGGAAGTAAATTTAAAGTACAAAAT......................................................................... 27 0 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGT......................................................................................................................... 24 1 13 1.00 13 0 4 2 0 5 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTGCTAGAGACAGTGCCAACTGCGT........... 26 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGGTCCGTCTTTATTTTGAA........................................................................................................ 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGA................................................................................................................................ 22 0 14 1.00 14 9 0 0 4 0 1 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAA............................................................................ 26 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACC.............................................................................................................................. 19 0 13 0.77 10 0 4 5 0 0 1 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCG............................................................................................................................. 25 0 13 0.77 10 9 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGA........................................................................................................................ 25 1 12 0.75 9 0 3 6 0 0 0 0 0 0 0 0 0
..................................................GATGGAGATAAAGAAATTCC.................................................................................................................................................................................... 20 2 3 0.67 2 0 0 0 0 0 0 0 2 0 0 0 0
.........................................................................TATAAGTTAAAGTAAACGTTGGTTTA....................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AAGGGTCGTGATGGAGATAAATATAT....................................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTA............................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAAAGTACAAAATTGGGTGA.................................................................. 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................TACCTTGGCGTTTTTCAAGGGTG.......................................................................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAT............................................................................ 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TGGTCCGTCTTTATTTTGAAAA...................................................................................................... 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AAAATCGGAAGTAAATTTAAAGT................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTATTTTGAAAAAAATCGGAAGTAAATT...................................................................................... 29 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TATTTTGAAAAAAATCGGAAGTAAATT...................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCCGTCTTTATTTTGAAAAAAATCGGA.............................................................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................CAAGGGTCGTGATGGAGATAAATA.......................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TGGTCCGTCTTTATTTTGAAA....................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTAAAATACAAAATTGGGTGA.................................................................. 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AGTAAATTTAAAGTACAAAATTGGG..................................................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GTCTTTATTTTGAAAAAAATCGGA.............................................................................................. 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTGCCAACTGCGTTGCT....... 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCCGTCTTTATTTTGAAAAAAATCGG............................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGACCGGTGGTC....................................................................................................................... 27 0 12 0.50 6 5 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGAGACAGTGCCAACTGCGTTGCTGG..... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGC......................................................................................................................... 24 1 13 0.46 6 0 2 2 0 0 2 0 0 0 0 0 0
....................................................................................................................................................AAATCGGAAGTAAATTTAAAGTAAA............................................................................. 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGC........................................................................................................................ 25 1 12 0.33 4 0 1 3 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTT.......................................................................................................................... 23 1 13 0.31 4 0 1 0 0 3 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCGGT........................................................................................................................... 27 0 13 0.31 4 3 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGT........................................................................................................................... 22 0 13 0.31 4 0 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGG................................................................................................................................. 21 0 14 0.29 4 3 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCGGTGG......................................................................................................................... 29 0 12 0.25 3 2 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGACCGGTGG......................................................................................................................... 25 0 12 0.25 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCACAAGAAGGTAATTAGGACCGG............................................................................................................................ 25 0 13 0.23 3 2 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACC.............................................................................................................................. 24 0 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCACAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 27 0 13 0.23 3 1 0 0 1 1 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGTT........................................................................................................................ 25 1 13 0.23 3 0 1 2 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGAC....................................................................................................................... 26 1 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTTAC..................................................................................................................... 28 3 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................AGGTAATTAGGACCGGTGGTCCGTC................................................................................................................... 25 0 13 0.15 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTTTCACAAGAAGGTAATTAGGAC............................................................................................................................... 26 0 13 0.15 2 0 0 1 0 0 0 0 0 1 0 0 0
.......................................................................................................CACAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 25 0 13 0.15 2 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGTA........................................................................................................................ 25 2 13 0.15 2 0 0 1 0 1 0 0 0 0 0 0 0
..................................................................................................ATTTTCACAAGAAGGTAATTAGGACCGG............................................................................................................................ 28 0 13 0.15 2 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGA................................................................................................................................ 18 0 14 0.14 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGG................................................................................................................................. 16 0 14 0.14 2 0 1 1 0 0 0 0 0 0 0 0 0
.......................................TCCACGGTCGTCATGGAGA................................................................................................................................................................................................ 19 3 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
........................TTACCTTGGAGTCTTTCA................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTATACCCCCCAGCACCGTCGCTGC...................................... 26 0 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................ATTTATACCCCCCAGCACCGTCGCTGCTT.................................... 29 0 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................ATTTATACCCCCCAGCACCGT............................................ 21 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TATTTATACCCCCCAGCACCGTCGC......................................... 25 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATACCCCCCAGCACCGTCGCTGCT..................................... 25 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTCC...................................................................................................................... 27 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGACCGGTGGTCCGTC................................................................................................................... 31 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGCC....................................................................................................................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTTC...................................................................................................................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGATGGTT....................................................................................................................... 26 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCAGTGGT........................................................................................................................ 25 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTCA...................................................................................................................... 27 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATGAAGGTAATTAGGACCGGTGGTT....................................................................................................................... 26 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTT....................................................................................................................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................ACAAGAAGGTAATTAGGACCGGTGGT........................................................................................................................ 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGAAGGTAACTAGGACCGGTGGTCCGTC................................................................................................................... 28 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAGAAGGTAATTAGGACCGGTGGT........................................................................................................................ 24 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CACAAGAAGGTAATTAGGACCGGTGGT........................................................................................................................ 27 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AAGAAGGTAATTAGGACCGGTGGTC....................................................................................................................... 25 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCACAAGAAGGTAATTAGGACCGGTGG......................................................................................................................... 28 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTCCGTC................................................................................................................... 30 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CACAAGAAGGTAATTAGGACCGGTGGTC....................................................................................................................... 28 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................AAGAAGGTAATTAGGACCGGTGGT........................................................................................................................ 24 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGCT........................................................................................................................ 25 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGT............................................................................................................................ 21 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGTCTA..................................................................................................................... 28 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACCGT............................................................................................................................ 26 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CCAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 24 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GAAGGTAATTAGGACCGGTGGGCCG..................................................................................................................... 25 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAAGTAGGACCGGTGT......................................................................................................................... 24 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGG............................................................................................................................ 21 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TTATTTTCACAAGAAGGTAATTAGTACCGG............................................................................................................................ 30 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCACAAGAAGGTAATTAGGACA.............................................................................................................................. 24 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGTAT....................................................................................................................... 26 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCACAAGAAGGTAATTAGGACCGGT........................................................................................................................... 25 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AGGTAATTAGGACCGGTGGTC....................................................................................................................... 21 0 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................GGTAATTAGGACCGGTGGTCCGTC................................................................................................................... 24 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGA........................................................................................................................... 22 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCACAAGAAGGTAATTAGGACC.............................................................................................................................. 22 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGGAACT..................................................................................................................... 28 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................AAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 22 0 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................TTCACAAGAAGGTAATTAGGACCGGT........................................................................................................................... 26 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAAGAAGGTAATTAGGACCGGTG.......................................................................................................................... 23 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTC.......................................................................................................................... 23 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTATT........................................................................................................................ 25 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................CAAGAATGTAATTAGGACCGGTG.......................................................................................................................... 23 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGAAGGTAATTAGGACCGG............................................................................................................................ 19 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTTTCACAAGAAGGTAATTAGGACCGG............................................................................................................................ 29 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................GTAATTAGGACCGGTGGTC....................................................................................................................... 19 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GAAGGTAATTAGGACCGGTGG......................................................................................................................... 21 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGA................................................................................................................................ 17 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCACAAGAAGGTAAT..................................................................................................................................... 16 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAG.................................................................................................................................. 15 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGGACCGGTGCTA....................................................................................................................... 26 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................ATTTTCACAAGAAGGTAAT..................................................................................................................................... 19 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TAATTAGGACCGGTGGT........................................................................................................................ 17 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGAAAGTAATTAGGACC.............................................................................................................................. 17 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TTATTTTCACAAGAAGGTAATTAGGA................................................................................................................................ 26 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................ATTAGGACCGGTGGT........................................................................................................................ 15 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATTAGGACCGGTGG......................................................................................................................... 15 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATTTTCACAAGAAGGTAATTAGGA................................................................................................................................ 25 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATATCCTCCAGCACCGT............................................ 18 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TATGATGGTAATTAGGACCGGTG.......................................................................................................................... 23 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................TCGTGATGGGGATAGAT........................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CAAGAAGGTAATTAGA................................................................................................................................. 16 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCCGTCTTTATTTTGA......................................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................AAATTACCTTGGCGT...................................................................................................................................................................................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGTCCGGCTTGATTTTGAAA....................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................TCGTGCTGGGGATAAA............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................AATTAGGACCGGTGTA........................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTAGCACCATTTTACTTTGCTTTAATGGAACCGCAAAAAGTTCCCAGCACTACCTCTATTTATATAAGGTGTATATTCAATTTCATTTGCAACCAAATAAAAGTGTTCTTCCATTAATCCTGGCCACCAGGCAGAAATAAAACTTTTTTTAGCCTTCATTTAAATTTCATGTTTTAACCCACTATAAATATGGGGGGTCGTGGCAGCGACGAAGACGATCTCTGTCACGGTTGACGCAACGACCGAGAC
*****************************************************************************....(((((((...(((((...)))))....)))))))..............................********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body
.....................................................................................................................................AGAAATAAAACTTTTTTTAGCCTTCAT.......................................................................................... 27 0 2 18.50 37 24 12 0 0 0 1 0 0 0
.....................................................................................................................................AGAAATAAAACTTTTTTTAGCCTTC............................................................................................ 25 0 2 1.50 3 0 0 0 1 0 2 0 0 0
...........................................................................................................................................................................................................................TCTCTGTCACGGTTGACGCAACGA....... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CTCTGTCACGGTTGACGCAACGA....... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CGATCTCTGTCACGGTTGACGCAA.......... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................GATCTCTGTCACGGTTGACGCAACGA....... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGAAGACGATCTCTGTCACGGTTGACGC............ 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CGATCTCTGTCACGGTTGACGCAACG........ 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CGATCTCTGTCACGGTTGACGCAACGA....... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
................................................................ATAAGGTGTATATTCAATTTCATT.................................................................................................................................................................. 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0
................................CGCAAAAAGTTCCCAGCACTACCTCTAT.............................................................................................................................................................................................. 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................AAAATTTTTTTAGCCTT............................................................................................. 17 1 6 0.50 3 0 3 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCTTGGCAGCGACGAAGACGATCT............................ 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................................................................................................CCACCAGGCAGAAATAAAACTTT....................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................CCGCAAAAAGTTCCCAGCACTACCT.................................................................................................................................................................................................. 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................AAGACGATCTCTGTCACGGTTGACGCAA.......... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................AACGAAAAAAGTTCCCAGCACTACCTCT................................................................................................................................................................................................ 28 2 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................TTATATAAGGTGTATATTCAATTTCAT................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................AAAATTTTTTTTAGCCTT............................................................................................. 18 1 7 0.43 3 1 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGGTCGTGGCAGCGACGAAGACGAT.............................. 25 0 8 0.25 2 0 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................GGTCGTGGCAGCGACGAAAACGAT.............................. 24 1 9 0.22 2 0 0 0 0 0 0 2 0 0
............................................................................................................................................AAATTTTTTTTAGCCTT............................................................................................. 17 1 20 0.20 4 2 2 0 0 0 0 0 0 0
.............................................................................................................................................AAATTTTTTTAGCCTT............................................................................................. 16 1 20 0.20 4 1 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGACGAAGACGATCTCAGTCACGGT.................. 25 1 19 0.16 3 0 0 0 2 0 1 0 0 0
......................................................................................................AGTGTTCTTCCATTAATCCTGGCCA........................................................................................................................... 25 0 13 0.15 2 0 1 0 0 0 1 0 0 0
......................................................................................................AGTGTTCTTCCATTAATCCTGGCCAC.......................................................................................................................... 26 0 13 0.15 2 0 0 0 0 0 2 0 0 0
.....................................................................................................................................AGAAATAAAACTTTTTTTAGCCTTG............................................................................................ 25 1 20 0.15 3 0 0 0 0 0 3 0 0 0
.............................................................................................................TCTCAATAATCCTGGCCA........................................................................................................................... 18 3 20 0.15 3 0 0 0 1 0 2 0 0 0
.....................................................................................................................................................................................................GGCGTGGCAGCGACGAAGACGATCT............................ 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGGGTCGTGGCAGCGACGAAGACGAT.............................. 26 1 8 0.13 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................AGGTCGTGGCAGCGACGAAGACGAT.............................. 25 1 8 0.13 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCGTGGCAGCGACGAAGACGAT.............................. 24 0 8 0.13 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................GGGGTCGTGGCAGCGACGAAGACGAT.............................. 26 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGCGACGAAGACGATCTCAGTCACGGT.................. 27 1 19 0.11 2 1 0 1 0 0 0 0 0 0
.....................................................................................................................................AGAAATAAAACTTTTTTTAGCCTTGAT.......................................................................................... 27 1 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GGGTCGTGGCAGCGACGAAGACGA............................... 24 0 10 0.10 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCGTGGCAGCGACGAAGACGA............................... 23 0 10 0.10 1 0 0 0 0 0 0 1 0 0
.............................................................................................................TCTCATTAATCCTGGCC............................................................................................................................ 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0
.......................................................................................TTGCAAGCAAATAAAAGTGTTCTTCCA........................................................................................................................................ 27 1 12 0.08 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................GGGGTCGTGGCAGCGACGA..................................... 19 0 12 0.08 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................GGGGTCGTGGCAGCGACGAAAA.................................. 22 1 12 0.08 1 0 0 0 0 0 0 1 0 0
.................................................................................................ATAAAAGTGTTCTTCCATTAATCCTGGCC............................................................................................................................ 29 0 13 0.08 1 0 1 0 0 0 0 0 0 0
...................................................................................................AAAAGTGTTCTTCCATTAATCCTGGC............................................................................................................................. 26 0 13 0.08 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................ATATGGGGGGTCGAGG.............................................. 16 1 13 0.08 1 0 0 0 0 0 0 1 0 0
...................................................................................................................TAATCCTGGCCACCAGGCAGAA................................................................................................................. 22 0 13 0.08 1 0 0 0 0 0 0 1 0 0
.....................................................................................................AAGTGTTCTTCCATTAATCCTGGCCAC.......................................................................................................................... 27 0 13 0.08 1 1 0 0 0 0 0 0 0 0
......................................................................................................AGTGTTCTTCCATTAATCCTGGC............................................................................................................................. 23 0 13 0.08 1 0 0 0 1 0 0 0 0 0
.................................................................................................ATAAAAGTGTTCTTCCATTAATCCT................................................................................................................................ 25 0 14 0.07 1 0 1 0 0 0 0 0 0 0
.................................................................................................ATAAAAGTGTTCTTCCAT....................................................................................................................................... 18 0 14 0.07 1 0 0 0 0 0 0 1 0 0
...................................................................................................AAAAGTGTTCTTCCATTAA.................................................................................................................................... 19 0 14 0.07 1 0 0 0 1 0 0 0 0 0
........................................................................................................TGTTCTTCCATTAATCCT................................................................................................................................ 18 0 14 0.07 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................AACTCTGTCACGGTT................. 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0
........................................................................................................................CTGGCCACCAGGCAGAAATAAAACT......................................................................................................... 25 0 18 0.06 1 0 0 0 0 0 0 0 1 0
........................................................................................................................CTGGCCACCAGGCAGAAATAAAAC.......................................................................................................... 24 0 18 0.06 1 0 0 1 0 0 0 0 0 0
............................................................................................................................CCACCAGGCAGAAATAAAA........................................................................................................... 19 0 19 0.05 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................TGGCAGCGACGAAGACGAT.............................. 19 0 19 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................TGCCCACCAGGCAGCCAT............................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................TCCCTGTCATGGCTGACG............. 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................................TCTCATTAATCCTGGCCAA.......................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................AAGGCCACCAGGCAGAA................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................CGTGGCAGCGACGAAGA.................................. 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:21708000-21708249 + dsi_30665 TGATCG--TGGTAAAATGAAACGAA-ATTACCTTGGCGTTTTTCAAGGGTCGTGATGGAGATAAA---TATATT---------------------------CCACATATAAGTTAAAGTAAAC----GTTGGT---TTATTTTCACAAGAAG---GTAATTAGG--ACCGGTGGTCCGTCTTTATTTT------GAA-AAAAATCGGAAGTAAATTTAAAGTACAAAA--TTGGGTGATATTTATACCCCCCAGCACCGTCGCTGCTTCTGCTAGAGACAGTGCCAACTGCGTTGCTGGCTC--------------------------------------------------------TG
droSec2 scaffold_134:43790-44038 + TGACCG--TGGTAAAATGAAACGAA-ATTACCTTGGCGTTTTTCAAGGGTCGTGATGGAGATAAA---TATATT---------------------------CCCCATATAAGTTAAAGTAAAC----GTTGGT---TTATTTTCACAAGAAG---GTAATTAGG--ACCGGTGGTCCGTCTTTATTTT------GAC-AAAAATCGGAACTAAATTTA-AGTACAAAA--TGGGGTGGTATTTATACCCCCCAGCACCGTCGCTGCTTCTGCTAGCGTCAGTGCCAACTCCGTTGCTGGCTC--------------------------------------------------------TG
dm3 chrYHet:179214-179390 - ATAT---------------------------------------------------------------------------------------------------------AAATTAAAGTAAAC----GTTTGT---TTATTTTCACAAGAAG---TTAGTTCGG--ACCGGTGGTTCTTCTTTATTTT------GAC-AAAAATCGGAAGTAAATTTAAAGTACAAAA--TTGGGTGGTATTTATACCCCCCAGAACCGTCGCTGCTTCTGCTATCGTCAGTGACAACTCCGTTGCTG-ATC--------------------------------------------------------TG
droEre2 scaffold_4851:37098-37286 - ATATTT--T----------------------------------------------------------------------------------------------TTAATTAAGTTAAATAAAAG----ATTATTTA-TTTATTTTAAAAGAAT---GTTATTCGG--ACCAGAGGCCTGGATTTATTTG------CAC-AAAAATTGGAACTAAATCTGAATTACAAAAGTTTGGGTGATATTTATGTC--CCAGCTCCGTCGGTGCCTCTGCCTATGTCGGTGCGAACTCCGTCGCTACCTC--------------------------------------------------------TG
droYak3 v2_chr3h_random_002:398109-398394 + TGAAGTAATAGCGAAACACGACAAATACTAC---------TCTCAAAGGTCGCACAAAGGACAAT---TATGTTTTTATCGACCGTCTTAAAC--------CACTATACAAGTTAAGTAAAAC----ATTAATAA-TTGGTTTCACAAGAAA---GTTATTCGG--ACCAGAGGTCCGGGTTTATTTG------AAT-AAAAATTAGAACTGAACTTGGTTTACATGT--TTTGGTGTCATTTATGCCA-CCAGCTCCGTCGCTCCCCCTGCCTGCGGCGGTGCCAACTCCGTCGCTGCCTCTGCTCGCGTCGGTGCTTT----------------------------TG------GTTG
droEug1 scf7180000408987:485438-485521 - AACCC----------------------------------------------------------------------------------------------------------------------------GGGT---TTATTTTTTCGCGTAG---GTCTGTTTG--TCCGTCTGTCCGTATGTATGCT------GAG-ATATATGAGATGTAAAGTTGGAAT-----------------------------------------------------------------------------------------------------------------------------------------A
droBia1 scf7180000302377:25141-25203 - GTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCTT------TAA-AGTTCTTAAATCTAAATTTAAATCACAAGC--TTGCATAAAATTTCTACCC---------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415307:3973-4034 + TTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------A--GCTTGTGCTCCTTCTTTATTGA------GGG-AAGAATCAGAACTGTTCTTAAAAACTAAAC--T--------------------------------------------------------------------------------------------------------------------------------T
droEle1 scf7180000490238:55809-55853 - TGAATA--TAATAAAAAGAAATAAA-ATTACCTAGCCAATGTTCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droRho1 scf7180000775694:1868-2079 + TTAA------------------------------------------GTATCTTTATATACGTAGA---TATATT--------------T-AATCATTACTTAAAAATATAAGTTAAACACG-A----GTGACTTCAGTA--TTTAAAAAAATATAAATTTTAGG--ACACTTGGTCCGTATTTATTTG------CAC-ACAAATTGGAACTAAATTATGTTTACATAA--ATTGC-CATATTTATACCCAATAACTTTGTCGCTGCCTCTGCCAACGTCGGAGCTT---------------------------------T------------------------------------GCCG
droKik1 scf7180000302707:586150-586380 + TTGTAT--T-----------------------------------------------GGAGGTCAAAGTTGTAGG---------------------------TCAAATATAAGTTATAA--ACTCTCGGGTAGT---TTATTTAAAAAAATAT--ATTACTTCGG--ACACTTGGTCCGGTTTTATTGA-------ACAAAATAATCGAACTAAATTATGTTTACAATT--TATGGT-GTATTTATACCC-CTAACTTAGTCGCTGCCTCTGCCGACGTCGGAGCTT---------------------------------TGCACTTGTCTTTGCTGCACCGGGAAGTGGGGCAGACGCTG
droBip1 scf7180000391793:10622-10738 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGG--ACACTTGGTCCATATTTATTAG------TAC-AAAAATTGGAACTGAATTATGTTCACAAAA--ATTGGC-ATATTTATACCCAATAGCATTGTCGCTGCCTCTGCCAACGTCGGAGC----------------TT--------------------------------------------------------TG
dp5 Unknown_singleton_3596:784-824 + GTCTTC--C-----------------------------------AAGGCTCAGGATCGAGATAAA---TATATA-------------------------------------------------------------------------------------------------------------------------------------------------------CAA--GAT------------------------------------------------------------------------------------------------------------------------------A
droPer2 scaffold_9:2471130-2471185 - TTTTTT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC-GGTGAACTGCAATAAATTTAAAATATAAAA--TCGGGCCATAATTATA------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004558:1799971-1800079 + AAGTTT--C-----------------------------------------------------------------------------------------------------------AGAAAAT----GTTTAG---TTATTTTTACAGAAAA---GTGAATAGGTGGGTAA-AAATTATGTTTGATTTGATATTAAA-TTTAATTTAAAAAATATTTAAA--ACAAAA--GTG------------------------------------------------------------------------------------------------------------------------------G
droVir3 scaffold_12970:1340525-1340590 + TACTTA--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAACAACAACGTCGCTTTTTTCACTGAAAATCGAACCAGCCTCGTTCCTGGCAA--------------------------------------------------------TG
droMoj3 scaffold_6496:1675902-1675968 - GTGAAG---------------------------------------------------AAGATAAA---TGCTGA---------------------------GCAAACGAGAGTTTAAGTAAAT----ATAGAA---CTGTTTATACGAAAAG---GTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGATCG--TGGTAAAATGAAACGAA-ATTACCTTGGCGTTTTTCAAGGGTCGTGATGGAGATAAA---TATATT---------------------------CCACATATAAGTTAAAGTAAAC----GTTGGT---TTATTTTCACAAGAAG---GTAATTAGG--ACCGGTGGTCCGTCTTTATTTT------GAA-AAAAATCGGAAGTAAATTTAAAGTACAAAA--TTGGGTGATATTTATACCCCCCAGCACCGTCGCTGCTTCTGCTAGAGACAGTGCCAACTGCGTTGCTGGCTC--------------------------------------------------------TGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................23138.8511500010002515480341000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACA.......................................................................................................................................2528.0016000000100600000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGG..........................................................................................................................................................................................24125.5867001200015010201162000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGT.........................................................................................................................................................................................25124.83580000000311215090000
.......................................................................................................................................................................................................AAAATCGGAAGTAAATTTAAAGTACA.......................................................................................................................................2623.50700000060100000000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAAAA--T.................................................................................................................................2922.50500000020300000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................26122.2527000000019006020000
.................................................................................................................................................CAAGAAG---GTAATTAGG--AC................................................................................................................................................................................................18132.0026000018007001000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................26132.0026000000200600000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................28131.8524000000200400000000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAAAA--TT................................................................................................................................3021.50300000030000000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--AC................................................................................................................................................................................................23131.3818000000130500000000
................................................................................................................................................ACAAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................24131.1515000000140100000000
..........................................................................................................................................................................................................ATCGGAAGTAAATTTAAAGTACAAAA--T.................................................................................................................................2721.00200000001010000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGT..........................................................................................................................................................................................24131.001300000002024050000
...........................................................................................................................................................................................................................................................................TCTGCTAGAGACAGTGCCAACTGCGT...................................................................2621.00200000010001000000
...........................................................................................................................................................................TGGTCCGTCTTTATTTT------GAA-..................................................................................................................................................................2021.00200000020000000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--A.................................................................................................................................................................................................22141.001400000090410000000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAA......................................................................................................................................2621.00200000010100000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACC...............................................................................................................................................................................................19130.771000000005014000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCG..............................................................................................................................................................................................25130.771000000090100000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGA.........................................................................................................................................................................................25120.75900000006003000000
..........................................................................................................TATAAGTTAAAGTAAAC----GTTGGT---TTA.............................................................................................................................................................................................................................2620.50100000010000000000
............................................AAGGGTCGTGATGGAGATAAA---TATAT...............................................................................................................................................................................................................................................................................................2620.50100000000010000000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTA.........................................................................................................................................2320.50100000010000000000
........................................................................................................................................................................................................................TAAAGTACAAAA--TTGGGTGA..........................................................................................................................2020.50100000000000010000
............................TACCTTGGCGTTTTTCAAGGGTG.....................................................................................................................................................................................................................................................................................................................2320.50100000000001000000
........................................................................................................................................................................................................AAATCGGAAGTAAATTTAAAGTACAT......................................................................................................................................2620.50100000000100000000
...........................................................................................................................................................................TGGTCCGTCTTTATTTT------GAA-AA................................................................................................................................................................2220.50100000000100000000
.......................................................................................................................................................................................................AAAATCGGAAGTAAATTTAAAGT..........................................................................................................................................2320.50100000010000000000
....................................................................................................................................................................................TTTATTTT------GAA-AAAAATCGGAAGTAAATT................................................................................................................................................2920.50100000001000000000
......................................................................................................................................................................................TATTTT------GAA-AAAAATCGGAAGTAAATT................................................................................................................................................2720.50100000000001000000
..............................................................................................................................................................................TCCGTCTTTATTTT------GAA-AAAAATCGGA........................................................................................................................................................2720.50100000001000000000
...........................................CAAGGGTCGTGATGGAGATAAA---TA..................................................................................................................................................................................................................................................................................................2420.50100000000100000000
...........................................................................................................................................................................TGGTCCGTCTTTATTTT------GAA-A.................................................................................................................................................................2120.50100000000100000000
................................................................................................................................................................................................................AGTAAATTTAAAGTACAAAA--TTGGG.............................................................................................................................2520.50100000000010000000
.................................................................................................................................................................................GTCTTTATTTT------GAA-AAAAATCGGA........................................................................................................................................................2420.50100000000100000000
........................................................................................................................................................................................................................................................................................GTGCCAACTGCGTTGCT...............................................................1720.50100000000001000000
..............................................................................................................................................................................TCCGTCTTTATTTT------GAA-AAAAATCGG.........................................................................................................................................................2620.50100000000100000000
................................................................................................................................................ACAAGAAG---GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................27120.50600000050100000000
.................................................................................................................................................................................................................................................................................AGAGACAGTGCCAACTGCGTTGCTGG.............................................................2620.50100000001000000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGC..........................................................................................................................................................................................24130.46600000002022000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGC.........................................................................................................................................................................................25120.33400000003001000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTT...........................................................................................................................................................................................23130.31400000000001030000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCGGT............................................................................................................................................................................................27130.31400000030100000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGT............................................................................................................................................................................................22130.31400000000002020000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--..................................................................................................................................................................................................21140.29400000030100000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCGGTGG..........................................................................................................................................................................................29120.25300000020100000000
................................................................................................................................................ACAAGAAG---GTAATTAGG--ACCGGTGG..........................................................................................................................................................................................25120.25300000030000000000
.............................................................................................................................................TTCACAAGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................25130.23300000020001000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACC...............................................................................................................................................................................................24130.23300000030000000000
.............................................................................................................................................TTCACAAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................27130.23300000010100010000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTTAC......................................................................................................................................................................................28120.17200000002000000000
......................................................................................................................................................AG---GTAATTAGG--ACCGGTGGTCCGTC....................................................................................................................................................................................25130.15200000000002000000
.........................................................................................................................................TATTTTCACAAGAAG---GTAATTAGG--AC................................................................................................................................................................................................26130.15200010001000000000
...............................................................................................................................................CACAAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................25130.15200000010100000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGTA.........................................................................................................................................................................................25130.15200000001000010000
..........................................................................................................................................ATTTTCACAAGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................28130.15200000010000010000
................................................................................................................................................ACAAGAAG---GTAATTAGG--A.................................................................................................................................................................................................18140.14200000020000000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--..................................................................................................................................................................................................16140.14200000001001000000
................................................................................................................................................................................................................................................TTTATACCCCCCAGCACCGTCGCTGC..............................................................................................26100.10100010000000000000
...............................................................................................................................................................................................................................................ATTTATACCCCCCAGCACCGTCGCTGCTT............................................................................................29100.10100010000000000000
...............................................................................................................................................................................................................................................ATTTATACCCCCCAGCACCGT....................................................................................................21100.10100000000001000000
..............................................................................................................................................................................................................................................TATTTATACCCCCCAGCACCGTCGC.................................................................................................25100.10100000010000000000
..................................................................................................................................................................................................................................................TATACCCCCCAGCACCGTCGCTGCT.............................................................................................25100.10100000000100000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTCC.......................................................................................................................................................................................27120.08100000001000000000
................................................................................................................................................ACAAGAAG---GTAATTAGG--ACCGGTGGTCCGTC....................................................................................................................................................................................31120.08100000010000000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTCA.......................................................................................................................................................................................27120.08100000000001000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTT........................................................................................................................................................................................26120.08100000001000000000
................................................................................................................................................ACAAGAAG---GTAATTAGG--ACCGGTGGT.........................................................................................................................................................................................26120.08100000010000000000
...............................................................................................................................................CACAAGAAG---GTAATTAGG--ACCGGTGGT.........................................................................................................................................................................................27120.08100000000100000000
..................................................................................................................................................AAGAAG---GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................25120.08100000010000000000
.............................................................................................................................................TTCACAAGAAG---GTAATTAGG--ACCGGTGG..........................................................................................................................................................................................28120.08100000010000000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTCCGTC....................................................................................................................................................................................30120.08100000001000000000
...............................................................................................................................................CACAAGAAG---GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................28120.08100000001000000000
..................................................................................................................................................AAGAAG---GTAATTAGG--ACCGGTGGT.........................................................................................................................................................................................24120.08100000000000010000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGT.............................................................................................................................................................................................21130.08100000000001000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGGTCTA......................................................................................................................................................................................28130.08100000000001000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACCGT.............................................................................................................................................................................................26130.08100000010000000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................21130.08100000000001000000
............................................................................................................................................TTTCACAAGAAG---GTAATTAGG--ACA...............................................................................................................................................................................................24130.08100000000000001000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTGTAT........................................................................................................................................................................................26130.08100000000000010000
..............................................................................................................................................TCACAAGAAG---GTAATTAGG--ACCGGT............................................................................................................................................................................................25130.08100000000100000000
......................................................................................................................................................AG---GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................21130.08100000000000100000
.......................................................................................................................................................G---GTAATTAGG--ACCGGTGGTCCGTC....................................................................................................................................................................................24130.08100000000001000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGA............................................................................................................................................................................................22130.08100000000001000000
..............................................................................................................................................TCACAAGAAG---GTAATTAGG--ACC...............................................................................................................................................................................................22130.08100000000100000000
..................................................................................................................................................AAGAAG---GTAATTAGG--ACCGGTG...........................................................................................................................................................................................22130.08100010000000000000
.............................................................................................................................................TTCACAAGAAG---GTAATTAGG--ACCGGT............................................................................................................................................................................................26130.08100000000000010000
.................................................................................................................................................CAAGAAG---GTAATTAGG--ACCGGTC...........................................................................................................................................................................................23130.08100000000001000000
...................................................................................................................................................AGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................19130.08100000000001000000
.........................................................................................................................................TATTTTCACAAGAAG---GTAATTAGG--ACCGG.............................................................................................................................................................................................29130.08100000000000010000
...........................................................................................................................................................GTAATTAGG--ACCGGTGGTC........................................................................................................................................................................................19130.08100000000001000000
....................................................................................................................................................GAAG---GTAATTAGG--ACCGGTGG..........................................................................................................................................................................................21130.08100000000001000000
.................................................................................................................................................CAAGAAG---GTAATTAGG--A.................................................................................................................................................................................................17140.07100000000001000000
.............................................................................................................................................TTCACAAGAAG---GTAAT........................................................................................................................................................................................................16140.07100000000001000000
.................................................................................................................................................CAAGAAG---GTAATTAG.....................................................................................................................................................................................................15140.07100000000001000000
..........................................................................................................................................ATTTTCACAAGAAG---GTAAT........................................................................................................................................................................................................19140.07100000000001000000
............................................................................................................................................................TAATTAGG--ACCGGTGGT.........................................................................................................................................................................................17140.07100000000001000000
........................................................................................................................................TTATTTTCACAAGAAG---GTAATTAGG--A.................................................................................................................................................................................................26140.07100000000010000000
..............................................................................................................................................................ATTAGG--ACCGGTGGT.........................................................................................................................................................................................15140.07100000000001000000
.............................................................................................................................................................AATTAGG--ACCGGTGG..........................................................................................................................................................................................15140.07100000000001000000
.........................................................................................................................................TATTTTCACAAGAAG---GTAATTAGG--A.................................................................................................................................................................................................25140.07100000010000000000
.................................................................................................................................................CAAGAAG---GTAATTAGA--..................................................................................................................................................................................................16190.05100000001000000000
..............................................................................................................................................................................TCCGTCTTTATTTT------GA....................................................................................................................................................................16200.05100000000001000000
.......................AA-ATTACCTTGGCGT.................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.............................................................................................................................................................AATTAGG--ACCGGTGTA.........................................................................................................................................................................................16200.05100000000001000000
droSec2
TGACCG--TGGTAAAATGAAACGAA-ATTACCTTGGCGTTTTTCAAGGGTCGTGATGGAGATAAA---TATATT---------------------------CCCCATATAAGTTAAAGTAAAC----GTTGGT---TTATTTTCACAAGAAG---GTAATTAGG--ACCGGTGGTCCGTCTTTATTTT------GAC-AAAAATCGGAACTAAATTTA-AGTACAAAA--TGGGGTGGTATTTATACCCCCCAGCACCGTCGCTGCTTCTGCTAGCGTCAGTGCCAACTCCGTTGCTGGCTC--------------------------------------------------------TGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................TATT---------------------------CCCCATATAAGTTAAAGTAAAC----GT.......................................................................................................................................................................................................................................2820.5011000
.......................................................................................................................................................................................................AAAATCGGAACTAAATTTA-AGTAC........................................................................................................................................2420.5011000
.......................................................................................................................................................................................................................................................................TGCTTCTGCTAGCGTCAGTGCCAACTC......................................................................27170.0611000
................................................................................................................................................................................................................................................................................TAGCGTCAGTGCCAACTCCGTTGCTG..............................................................26180.0611000
................................................................................................................................................................................................................................................................................TAGCGTCAGTGCCAACTCCGTTGCT...............................................................25180.0610010
................................................................................................................................................................................................................................................TTTATACCCCCCAGCACCGTC...................................................................................................21200.0510001
.......................................................................................................................................................................................................................................................................TGCTTCTGCTAGCGTCAGTGC............................................................................21200.0510100
...................................................................................................................................................................................................................................................................................CGTCAGTGCCAACTCCGTTGC................................................................21200.0510001
dm3
ATAT---------------------------------------------------------------------------------------------------------AAATTAAAGTAAAC----GTTTGT---TTATTTTCACAAGAAG---TTAGTTCGG--ACCGGTGGTTCTTCTTTATTTT------GAC-AAAAATCGGAAGTAAATTTAAAGTACAAAA--TTGGGTGGTATTTATACCCCCCAGAACCGTCGCTGCTTCTGCTATCGTCAGTGACAACTCCGTTGCTG-ATC--------------------------------------------------------TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTTTCAC......................................................................................................................................................................................................................2626.00120000000000000000000000000000000000000000000000000000000000000000000000000000042330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTAAAGTAAAC----GTTTGT---TTATTTTCAC......................................................................................................................................................................................................................2723.0060000000000000000000000000000000000000000000000000000000000000000000000000000021030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAGTAAAC----GTTTGT---TTATTTTC........................................................................................................................................................................................................................2223.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATT...........................................................................................................................................................................................................................2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTT..........................................................................................................................................................................................................................2222.5050000000000000000000000000000000000000000000000000000000000000000000000000000020210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTTTC........................................................................................................................................................................................................................2422.5050000000000000000000000000000000000000000000000000000000000000000000000000000020030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTTT.........................................................................................................................................................................................................................2322.0040000000000000000000000000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTAAAGTAAAC----GTTTGT---TTAT............................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................TTAAAGTAAAC----GTTTGT---TTATTTT.........................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TT..............................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTAAAGTAAAC----GTTTGT---TTATT...........................................................................................................................................................................................................................2221.0020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AGAACCGTCGCTGCTTCTGCT.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AAGTAAAC----GTTTGT---TTATTTT.........................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTA.............................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................AAAGTAAAC----GTTTGT---TTATTTT.........................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTAAAGTAAAC----GTTTGT---TTATTTTCA.......................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAAGTAAAC----GTTTGT---TTATT...........................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTTTCA.......................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAAAGTAAAC----GTTTGT---TTATTTTCAA......................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TAAAGTACAAAA--TTGGGTGGT.........................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................GGTGGTTCTTCTTTATTAG------......................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATATTT--T----------------------------------------------------------------------------------------------TTAATTAAGTTAAATAAAAG----ATTATTTA-TTTATTTTAAAAGAAT---GTTATTCGG--ACCAGAGGCCTGGATTTATTTG------CAC-AAAAATTGGAACTAAATCTGAATTACAAAAGTTTGGGTGATATTTATGTC--CCAGCTCCGTCGGTGCCTCTGCCTATGTCGGTGCGAACTCCGTCGCTACCTC--------------------------------------------------------TGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TGAAGTAATAGCGAAACACGACAAATACTAC---------TCTCAAAGGTCGCACAAAGGACAAT---TATGTTTTTATCGACCGTCTTAAAC--------CACTATACAAGTTAAGTAAAAC----ATTAATAA-TTGGTTTCACAAGAAA---GTTATTCGG--ACCAGAGGTCCGGGTTTATTTG------AAT-AAAAATTAGAACTGAACTTGGTTTACATGT--TTTGGTGTCATTTATGCCA-CCAGCTCCGTCGCTCCCCCTGCCTGCGGCGGTGCCAACTCCGTCGCTGCCTCTGCTCGCGTCGGTGCTTT----------------------------TG------GTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................TCCGTCGCTGCCTCTGC.......................................................17201.0020000000000020
droEug1
AACCC----------------------------------------------------------------------------------------------------------------------------GGGT---TTATTTTTTCGCGTAG---GTCTGTTTG--TCCGTCTGTCCGTATGTATGCT------GAG-ATATATGAGATGTAAAGTTGGAAT-----------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
GTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCTT------TAA-AGTTCTTAAATCTAAATTTAAATCACAAGC--TTGCATAAAATTTCTACCC---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------A--GCTTGTGCTCCTTCTTTATTGA------GGG-AAGAATCAGAACTGTTCTTAAAAACTAAAC--T--------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
TGAATA--TAATAAAAAGAAATAAA-ATTACCTAGCCAATGTTCAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
TTAA------------------------------------------GTATCTTTATATACGTAGA---TATATT--------------T-AATCATTACTTAAAAATATAAGTTAAACACG-A----GTGACTTCAGTA--TTTAAAAAAATATAAATTTTAGG--ACACTTGGTCCGTATTTATTTG------CAC-ACAAATTGGAACTAAATTATGTTTACATAA--ATTGC-CATATTTATACCCAATAACTTTGTCGCTGCCTCTGCCAACGTCGGAGCTT---------------------------------T------------------------------------GCCGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTAT--T-----------------------------------------------GGAGGTCAAAGTTGTAGG---------------------------TCAAATATAAGTTATAA--ACTCTCGGGTAGT---TTATTTAAAAAAATAT--ATTACTTCGG--ACACTTGGTCCGGTTTTATTGA-------ACAAAATAATCGAACTAAATTATGTTTACAATT--TATGGT-GTATTTATACCC-CTAACTTAGTCGCTGCCTCTGCCGACGTCGGAGCTT---------------------------------TGCACTTGTCTTTGCTGCACCGGGAAGTGGGGCAGACGCTGSizeHit CountTotal NormTotal
No Reads
droBip1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGG--ACACTTGGTCCATATTTATTAG------TAC-AAAAATTGGAACTGAATTATGTTCACAAAA--ATTGGC-ATATTTATACCCAATAGCATTGTCGCTGCCTCTGCCAACGTCGGAGC----------------TT--------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
dp5
GTCTTC--C-----------------------------------AAGGCTCAGGATCGAGATAAA---TATATA-------------------------------------------------------------------------------------------------------------------------------------------------------CAA--GAT------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTTTT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC-GGTGAACTGCAATAAATTTAAAATATAAAA--TCGGGCCATAATTATA------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAGTTT--C-----------------------------------------------------------------------------------------------------------AGAAAAT----GTTTAG---TTATTTTTACAGAAAA---GTGAATAGGTGGGTAA-AAATTATGTTTGATTTGATATTAAA-TTTAATTTAAAAAATATTTAAA--ACAAAA--GTG------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TACTTA--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAACAACAACGTCGCTTTTTTCACTGAAAATCGAACCAGCCTCGTTCCTGGCAA--------------------------------------------------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GTGAAG---------------------------------------------------AAGATAAA---TGCTGA---------------------------GCAAACGAGAGTTTAAGTAAAT----ATAGAA---CTGTTTATACGAAAAG---GTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 11:29 PM