ID:dsi_30652 |
Coordinate:2r:5829884-5830162 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -10.39 | -9.84 |
 |
 |
five_prime_UTR [2r_5829609_5829883_+]; exon [2r_5829609_5829883_+]; exon [2r_5830163_5830463_+]; five_prime_UTR [2r_5830163_5830269_+]; intron [2r_5829884_5830162_+]
No Repeatable elements found
| ##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAGAGCTGCGTATAGTACACAATAGTTTCGATTCCGTCACATTTGGCACGGTAATTACCTGCACTCACCGACCTAGGCGAATCAATAGAACACCATTATCCGCCCACCACCGCCACCACCACCCAATCCCGCCCATTGTTCTGTTGGTGCACGTGACGACGCCGCTGGGAAGTCCGAGCCCAACAACGAAAGTCCGGGGTCAATCCAATAGTTACAGATACTATCGGTCTGCGGACTCAGTTTCGATTTGTGTCACAGCCGCGTCACAGGTTTATTAAGTCGCCTTGTCTAAATTTGTATTTATTCTTTTATTTTGCCCTCTTTTTAAGGTAAGCACACATAAATTGTGGAACCCAGCACAATTGACAGAGCACCCGGA *****************************************************************************((.((((((((((((............................................))))))))))))...))....****************************************************************************************************************************************************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
M023 head |
SRR902009 testis |
M025 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
M053 female body |
O002 Head |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................GTTCTGTTGGTGCACGTGAC.............................................................................................................................................................................................................................. | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................GCCCATTGTTCTGTTGGTG...................................................................................................................................................................................................................................... | 19 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................CGAATCAATAGAACACCATT.......................................................................................................................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................CCATTATCCGCCCACCACCGC.......................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CACGTGACGACGCCGCTGG................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................................................................ACACATAAATTGTGGAACCCA....................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................AAAGTCCGGGGTCAATCCAAT.......................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CACGTGACGACGCCGCTGGG.................................................................................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................................................GTCACAGCCGCGTCACAG.............................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................................................................GCACAATTGACAGAGCACCCG.. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................................................................AATTGTGGAACCCAGCACAAT................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................GGACTCAGTTTCGATTTGTGTCA............................................................................................................................ | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................ATACTATCGGTCTGCGGA................................................................................................................................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................CAGATACTATCGGTCTGCGG................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................CCATTGTTCTGTTGGTGCACG.................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................TCAGTTTCGATCTGTG............................................................................................................................... | 16 | 1 | 5 | 0.60 | 3 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TCTTTCGGTGCACGTGACCAC........................................................................................................................................................................................................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................TTGGCGAATCATTAGAACAAC............................................................................................................................................................................................................................................................................................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................................TATTCCCTCTGTTTAAGGTA............................................... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ......................TAGTTTCGATTTCGGCTCATTT............................................................................................................................................................................................................................................................................................................................................... | 22 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................TTTCGATTCCGTCCC................................................................................................................................................................................................................................................................................................................................................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................GCCTTGTCTACATTTGTACTG............................................................................. | 21 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........................GTTTCGATTCCGTCC.................................................................................................................................................................................................................................................................................................................................................... | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................TCCGATCACCACCGTCACCAC.................................................................................................................................................................................................................................................................... | 21 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................................................................................................................................................................................................TCAGTTTCGATCGGTGT.............................................................................................................................. | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................................................................................................................AACAATTGACAGAGCA...... | 16 | 1 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TCTTTCGGTGCACGTGA............................................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................................................................................................................................TAGCATCGGTCTGCGG................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
|
CTCTCGACGCATATCATGTGTTATCAAAGCTAAGGCAGTGTAAACCGTGCCATTAATGGACGTGAGTGGCTGGATCCGCTTAGTTATCTTGTGGTAATAGGCGGGTGGTGGCGGTGGTGGTGGGTTAGGGCGGGTAACAAGACAACCACGTGCACTGCTGCGGCGACCCTTCAGGCTCGGGTTGTTGCTTTCAGGCCCCAGTTAGGTTATCAATGTCTATGATAGCCAGACGCCTGAGTCAAAGCTAAACACAGTGTCGGCGCAGTGTCCAAATAATTCAGCGGAACAGATTTAAACATAAATAAGAAAATAAAACGGGAGAAAAATTCCATTCGTGTGTATTTAACACCTTGGGTCGTGTTAACTGTCTCGTGGGCCT
******************************************************************************************************************************************************************************************************************************((.((((((((((((............................................))))))))))))...))....***************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
M024 male body |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
M053 female body |
O002 Head |
SRR902009 testis |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................CGTGCACTGCTGCGGCGACCC.................................................................................................................................................................................................................. | 21 | 0 | 1 | 5.00 | 5 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................TCGGGTTGTTGCTTTCAGGCC...................................................................................................................................................................................... | 21 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................TCGGGTTGTTGCTTTCAGGC....................................................................................................................................................................................... | 20 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................AGGCTCGGGTTGTTGCTTTCA.......................................................................................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................CGCAGTGTCCAAATAATT..................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................CTCGGGTTGTTGCTTTCAGG........................................................................................................................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................................................................................................................CAGGCTCGGGTTGTTGCTTTC........................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................GCTAAACACAGGGTCGGCGCA................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................TGCCAGACGCCTGAGTCAAAGC...................................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................CGGGTAACAAGACAACCACGT.................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................AGAAAATAAAACGGGAGAAAAATTC.................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................TTCAGCTGAAAAGATTTAAAC.................................................................................. | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................CGGCGACCCTTCAGGCTCG........................................................................................................................................................................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................CTGGATCCGCTTAGTTATCTT................................................................................................................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................................................CCAAATCATTCAGCGGTAC............................................................................................ | 19 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................AAATGTACGTCAGTGGCTGGAT................................................................................................................................................................................................................................................................................................................ | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................CCGGGTTGTTGCTTTCAGGC....................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................GTGGCTGGATCCGCTTAGTTA..................................................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................TGAGTGGCTGGCTCCG............................................................................................................................................................................................................................................................................................................. | 16 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..............................................................................................................................................................................................TCAGGCCCCAGTTAGGTTATC........................................................................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................AAGAAAGCCACGTGCACTGGT............................................................................................................................................................................................................................ | 21 | 3 | 2 | 1.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................GCAGGCTCGGGTTGTTGCTTT............................................................................................................................................................................................ | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................GCTAAACACAGTGTCGGCGCAGT................................................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................TAGGGCGGGTAACAAGACAAC......................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............................................................................................................................................................................................................................................CGAAGCTAAACACAGTGTCGGC...................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................GCTAAACACAGTGTCGGCGCA................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................AAGCTAAGGCAGTGTAAAC.............................................................................................................................................................................................................................................................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................GGCGGGTAACAAGACAACCAC...................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................................................GCTGGGTCCGCTTAGTTAT.................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................CGTGCGCTGCTGCGGCGACC................................................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................................................................TCCAAACCATTCAGCGGTAC............................................................................................ | 20 | 3 | 3 | 1.00 | 3 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 |
| ....................................................................................................................................................................................................................................................................................TTCAGCGGAACAGATTTAAAC.................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................GCCATTAATGGACGTGAGTGGCTG................................................................................................................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................AGAAAGCCACGTGCACTGGT............................................................................................................................................................................................................................ | 20 | 3 | 9 | 0.67 | 6 | 0 | 0 | 0 | 6 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................TGTGGTATTAGGATGGTGGTG............................................................................................................................................................................................................................................................................. | 21 | 3 | 4 | 0.50 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| .............................................................................................GTAATAGGCGAGTGTTGG............................................................................................................................................................................................................................................................................ | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................................................................................................................TCAATGTGTCTGATAGCAAG...................................................................................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................CAGACTCGGGTTGTAGCGTT............................................................................................................................................................................................ | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................GGTTGTTGCTTTCAG......................................................................................................................................................................................... | 15 | 0 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................TCAAAGCTAAGGCGGTCT.................................................................................................................................................................................................................................................................................................................................................. | 18 | 2 | 6 | 0.33 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................TGTCGGCGAAGTGCCCA............................................................................................................ | 17 | 2 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................................................TCTTTCAGGCCGCAGTTGG.............................................................................................................................................................................. | 19 | 3 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................GGCCCAGTTAGGTTATT........................................................................................................................................................................ | 17 | 2 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................AAAGCTGATGCAGTGTA................................................................................................................................................................................................................................................................................................................................................. | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................................................TCTTTCAGGCCGCAGT................................................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................AAGGTGTTGCTTTCAGGC....................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 12:42 AM