ID:dsi_3065 |
Coordinate:2r:5854338-5854565 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -18.6 | -18.4 | -18.4 |
 |
 |
 |
exon [2r_5854192_5854337_-]; CDS [2r_5854192_5854337_-]; CDS [2r_5854566_5854888_-]; exon [2r_5854566_5854888_-]; intron [2r_5854338_5854565_-]
No Repeatable elements found
| ##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATGCTCACTATCATCATGGTAGTACTGCTCCTCACCGCATTTGTATCGGGTAAGTTCCAAATTTCATAATTTAGCATGCAAGCGTCGTTTAAAACCGAGGTGATCATACGGGAAAGCCCTGAAATCGTTTAAGTACCTATATCGTTTTGGCACTTCAAGATTTCATAAATCGATTGAAATTCTGAAATGGGATTGTTATTAATTGCCACCTTATTTTGTTTGCGGATAAGCATTGACAAAGATCTTGGTTTGATATATTCATTTTGGCTATCACCAGACGGCAGCAACTCGGTGTTCTATAAGTTTATGAGGATAAAGTTCCATTGG ***************************************************************************************************************************************************....((.((((.(((((((.........))))))).)))).))...............((((.....((((((((((......)))..)))))))....))))****************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M023 head |
M024 male body |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
GSM343915 embryo |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................TGCGGATAAGCATTGACAAAGATCTTGGT.............................................................................. | 29 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................AATCGATTGAAATTCTGAAATGGGG....................................................................................................................................... | 25 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................TAGTTTTGGCACTTCAAGATTTCATAAA.............................................................................................................................................................. | 28 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................ATATATTCATTTTGGCTATCA...................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................TTGGCACTTCAAGATTTCATAAATCGA.......................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................TGCTCCTCACCGCATTTGTATCGGGTAAG................................................................................................................................................................................................................................................................................. | 29 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................................................TCGGTATTCTATAAGTTTATGAGGA.............. | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................ATAAATCGATTGAAATTCTGAAATGGGGT...................................................................................................................................... | 29 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................TATATTCATTTTGGCTATCACCAGA................................................. | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................AGGTGATCAGAGGGGAAA.................................................................................................................................................................................................................... | 18 | 2 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................TTCCGGATAAGGATTGAC.......................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................CCTGAAACCGTGTACGTA................................................................................................................................................................................................ | 18 | 3 | 20 | 0.20 | 4 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 |
| ....................................................................................................................................................................................TTTTGAAAGGGGATTGTTAGT............................................................................................................................... | 21 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................GTTGAAAACCGATGTGATGA............................................................................................................................................................................................................................. | 20 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................ATTGGGAAAGATCTTGGT.............................................................................. | 18 | 2 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................GTTTAAAACCGATGGGA................................................................................................................................................................................................................................ | 17 | 2 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................TAGGTGATCAGAGGGGAAA.................................................................................................................................................................................................................... | 19 | 3 | 18 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................GCAGTTCTATCGGGTA................................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................AGGTGATCAGAGGGGAAAA................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................TGAATCGATTGAACTTCGG............................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................TGGGTGATCATACGCGAA..................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
GTACGAGTGATAGTAGTACCATCATGACGAGGAGTGGCGTAAACATAGCCCATTCAAGGTTTAAAGTATTAAATCGTACGTTCGCAGCAAATTTTGGCTCCACTAGTATGCCCTTTCGGGACTTTAGCAAATTCATGGATATAGCAAAACCGTGAAGTTCTAAAGTATTTAGCTAACTTTAAGACTTTACCCTAACAATAATTAACGGTGGAATAAAACAAACGCCTATTCGTAACTGTTTCTAGAACCAAACTATATAAGTAAAACCGATAGTGGTCTGCCGTCGTTGAGCCACAAGATATTCAAATACTCCTATTTCAAGGTAACC
******************************************************************************....((.((((.(((((((.........))))))).)))).))...............((((.....((((((((((......)))..)))))))....))))*************************************************************************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|
| ...............GTACCATCATGCCGACTAGTG.................................................................................................................................................................................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAGGAGT..................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAGG........................................................................................................................................................................................................................................................................................................ | 17 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGTAGAGT..................................................................................................................................................................................................................................................................................................... | 20 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| .....................................................................................AGCAAATTTTGGCTCCACTAGTATGCCCTTT.................................................................................................................................................................................................................... | 31 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 |
| ...............GTACCATCATGCCGAAGA....................................................................................................................................................................................................................................................................................................... | 18 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ...........................................................................................................ATGCCCTTTCGGGACTTTAGCAAGTTCAT................................................................................................................................................................................................ | 29 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................TCGTAACTGTTTCTAGAACCA.............................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ............GTTGTACCATCATGCCG........................................................................................................................................................................................................................................................................................................... | 17 | 2 | 7 | 0.71 | 5 | 5 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................CTAGAGCCAAATTATATAACT.................................................................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 |
| ...............GTACCATCATGCCGATGAGA..................................................................................................................................................................................................................................................................................................... | 20 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAGGAA...................................................................................................................................................................................................................................................................................................... | 19 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 |
| ....................ATCATGGCGAGGAGTGTAGT................................................................................................................................................................................................................................................................................................ | 20 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 |
| ...............GTACCATCATGCCGAGAA....................................................................................................................................................................................................................................................................................................... | 18 | 2 | 7 | 0.43 | 3 | 3 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAAG........................................................................................................................................................................................................................................................................................................ | 17 | 2 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 |
| ............GTTGTACCATCATGCCGA.......................................................................................................................................................................................................................................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAGC........................................................................................................................................................................................................................................................................................................ | 17 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 |
| ............GTGGTACCATCATGCCG........................................................................................................................................................................................................................................................................................................... | 17 | 2 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 |
| .................ACCATCATGCCGATGAGTTG................................................................................................................................................................................................................................................................................................... | 20 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGAGAAC...................................................................................................................................................................................................................................................................................................... | 19 | 3 | 12 | 0.17 | 2 | 2 | 0 | 0 | 0 |
| .................ACCATCATGCCGATGAGTT.................................................................................................................................................................................................................................................................................................... | 19 | 3 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 |
| ............GCTGTACCATCATGCCGA.......................................................................................................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................CCGATAGTGATCTTCCG............................................. | 17 | 2 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 |
| ...............GTACCATCATGCCGGAGA....................................................................................................................................................................................................................................................................................................... | 18 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 |
| .......TGATGGAGGTACCATCATG.............................................................................................................................................................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
Generated: 04/24/2015 at 01:26 AM