ID:

dsi_30646

 Coordinate:

3r:10860734-10860790 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10860488_10860733_+]; CDS [3r_10860488_10860733_+]; CDS [3r_10860791_10861056_+]; exon [3r_10860791_10861056_+]; intron [3r_10860734_10860790_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
TTACGAGGGCGACATCATAGGCGTGGCGCAAATTATTAACAAAACGAATGGTGAATATTTAAAGGATACGTCCTTCTTCCAAATTTATTAACTTGCATCCCTCGTAGGCTGCATGGAGTTCGACGAGCATGACGTGGAAATCTTTCGTCGCTATCTG
**************************************************...........(((((....)))))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................GACGTGCAAATCTATCGT......... 18 2 4 3.75 15 9 0 6 0 0 0 0
.................................................................................................................................TGACGTGCAAATCGTTCGT......... 19 2 2 3.00 6 0 6 0 0 0 0 0
...................................................................................................................................ACGTGCAAATCTATCGTCG....... 19 2 1 2.00 2 1 0 0 0 1 0 0
........................................................................................................ATGGCTGCATGGAGTTCGACGAGC............................. 24 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................TGACGTGCAAATCGTTCGTC........ 20 2 2 1.00 2 0 1 0 0 0 1 0
................................................................................................................................ATGACGTGGAAATCTTTCGT......... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................GACGTGCAAATCGTTCGTC........ 19 2 3 1.00 3 0 0 0 2 0 0 1
...................................................................................................................................ACGTGCAAATCTATCGTCGA...... 20 3 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................TGACGTGCAAATCTATCGTC........ 20 2 2 0.50 1 0 0 0 0 0 1 0
...............................................................................................................................CCTGACGTGCAAATCGTTCGTC........ 22 3 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................GACGTGCAAATCGTTCGT......... 18 2 3 0.33 1 0 1 0 0 0 0 0
...................................TTAACAAAACGAATGGA......................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0
.....................................................................................................................................GTGCAAATCTTTCGTC........ 16 1 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................GACGTGCAAATCGTTCG.......... 17 2 11 0.18 2 0 2 0 0 0 0 0
.......................................................................................................................................GGAAATCGTTCGTCG....... 15 1 17 0.12 2 0 0 0 1 0 0 1
.................................................................................................................................TGACGTGCAAATCGTTC........... 17 2 9 0.11 1 0 1 0 0 0 0 0

Anti-sense strand reads

AATGCTCCCGCTGTAGTATCCGCACCGCGTTTAATAATTGTTTTGCTTACCACTTATAAATTTCCTATGCAGGAAGAAGGTTTAAATAATTGAACGTAGGGAGCATCCGACGTACCTCAAGCTGCTCGTACTGCACCTTTAGAAAGCAGCGATAGAC
**************************************************...........(((((....)))))................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
................................................................CGATGCAGGAAGAAG.............................................................................. 15 1 4 0.25 1 1 0 0
...TCTCCCGCTGTAGGATC......................................................................................................................................... 17 2 4 0.25 1 1 0 0
.....................................................................................AAAATAGAACGTAGGGAG...................................................... 18 2 5 0.20 1 0 1 0
......................................................AAAAAATTTCCTATGCAG..................................................................................... 18 2 11 0.09 1 0 0 1
......................................................................................AAATAGAACGTAGGGAG...................................................... 17 2 16 0.06 1 0 1 0
....CTCCCGCTGCAGGATC......................................................................................................................................... 16 2 20 0.05 1 1 0 0

Generated: 04/24/2015 at 10:50 AM