ID:

dsi_30635

 Coordinate:

3r:11092995-11093144 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.6 -6.5 -6.4

Flybase annnotation

exon [3r_11093145_11093524_-]; five_prime_UTR [3r_11093145_11093524_-]; intron [3r_11091882_11093144_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCGCGTTGTCGTCGCCGTCGTCGTCGTCGCCGCTCTTGTATCTGTGTTTGTGAGTGCCGAAAAGATGAATACATACATATAGAAATACACACAAATAAACAAAAATATTATAAAAGAAGAGTTGCTATTAAGTGAAATATATGCACAACAACTACTAAAGTTGGAGAACGGTTACTGTCGTTGCCATGGGACGAACGTGAAGCCTCAATTGTGTGTATTTACACACTCGGTGATCTGCGCTGCTCCTCT
***********************************************************************************************************........................................................((....((........))...))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
...........GTCGCCGTCGTCGTCGTCGCC.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................CGTCGTCGTCGCCGCTCTT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................ATTATAAAAGAAGAGTTGCT........................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................GTTTGTGAGTGCCGAAAAG......................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................ACGGTTACTGTCGTTGCC................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TGGAGAACGGTTACTGTCGTTGCCATG............................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................CGCCGCTCTTGTATCTGTGT.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................TCGGTGTTTGTGAGTGC................................................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................TTACTGTCGTTGCCATGGGAC......................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................CGGTGTTTGTGAGTGC................................................................................................................................................................................................ 16 1 3 0.67 2 0 2 0 0 0 0 0 0 0
.......TGTCTTCGCCGTTGCCGTCGTC............................................................................................................................................................................................................................. 22 3 16 0.56 9 0 0 0 0 9 0 0 0 0
....CATTGTCGTCGCCGTTGTCGTCG............................................................................................................................................................................................................................... 23 2 3 0.33 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................GACTGAAGTTGGAGAAAGGTT............................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
............................................GTGTTTGTGAGTGCGGAA............................................................................................................................................................................................ 18 1 5 0.20 1 0 1 0 0 0 0 0 0 0
..........................................CGGTGTTTGTGAGTGCAG.............................................................................................................................................................................................. 18 2 10 0.20 2 0 2 0 0 0 0 0 0 0
.......TGTCTTCGCCGTTGCCGTCGTCG............................................................................................................................................................................................................................ 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0
...................CGTGGTCGTCGCCGCACT..................................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0
..........................................CGGTGTTTGTGAGTGCGG.............................................................................................................................................................................................. 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0
.............CGCCGTCTTCGTCGTCGC........................................................................................................................................................................................................................... 18 1 11 0.09 1 0 0 0 0 1 0 0 0 0
.........................................TCGGTGTTTGTGAGTG................................................................................................................................................................................................. 16 1 12 0.08 1 0 1 0 0 0 0 0 0 0
...........GTCGCCGTGGTCGTCGTCG............................................................................................................................................................................................................................ 19 1 13 0.08 1 0 0 1 0 0 0 0 0 0
............................CGCCGCTCTTCTATC............................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 1 0 0
...............CCGTCGTCGTCGTCGACGGT....................................................................................................................................................................................................................... 20 2 16 0.06 1 0 0 0 0 0 0 0 1 0
.....................................................................................................AAAAATGTTAGAAAAGATGAG................................................................................................................................ 21 3 16 0.06 1 0 0 0 0 0 0 0 0 1
............................................GTGTTTGTGAGTGCAG.............................................................................................................................................................................................. 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0
...........GTCACGGTCGTCGTCGTCCC........................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAGCGCAACAGCAGCGGCAGCAGCAGCAGCGGCGAGAACATAGACACAAACACTCACGGCTTTTCTACTTATGTATGTATATCTTTATGTGTGTTTATTTGTTTTTATAATATTTTCTTCTCAACGATAATTCACTTTATATACGTGTTGTTGATGATTTCAACCTCTTGCCAATGACAGCAACGGTACCCTGCTTGCACTTCGGAGTTAACACACATAAATGTGTGAGCCACTAGACGCGACGAGGAGA
****************************************************************........................................................((....((........))...))*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..........................................GACACAAACACTCACGGCTTT........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................AAAGACACAAACACTCCCGGCCTT........................................................................................................................................................................................... 24 3 2 0.50 1 0 0 1 0 0 0
........................................................................GTGTGTAGATCTTTAGGTGTGT............................................................................................................................................................ 22 3 3 0.33 1 0 1 0 0 0 0
..GCGCAACAGCAGCGGCTAC..................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0 0 0
............................................................................................................................................................................................................................ATGTGTAAGCCACTA............... 15 1 6 0.17 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................................TAGACGCCACGAGGA.. 15 1 9 0.11 1 0 0 0 0 1 0
.....................................................................................................................................ACTTTAGATATGTGTTGT................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 2
....................................................................................TTATGTGTATCTATTTGTTTCT................................................................................................................................................ 22 3 12 0.08 1 0 1 0 0 0 0
............................................................................................................................................................................................................................ATGTGTAAGCCACTATA............. 17 2 16 0.06 1 0 0 0 1 0 0
....................................................................................TTATGTCTATCTATTTGTTTTT................................................................................................................................................ 22 3 18 0.06 1 0 1 0 0 0 0
..........................................................................................................................................ATATACGTGTTGATG................................................................................................. 15 1 19 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11092945-11093194 - dsi_30635 A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCGTCG------CCGCT-------CTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATACATACATATA----GAAA--TACACACAAATAAACAAAAA---T--ATT---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC---------------------------TAAAGTTGGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAACG--------------------------------------------------------TGAAGC--CTCAATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------T
droSec2 scaffold_0:11924560-11924806 - A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCG---------CCGCT-------TTT----GTATC--TG--TGTTTGTGAGTTCCGAA---------------AAGATG--AATACATATATATA----AAAA--TACACACAAATAAACAAAAA---T--ATT---AT-AAATGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC---------------------------TAAAGCTGGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAACG--------------------------------------------------------TGAAGC--CTCAATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------T
dm3 chr3R:10115122-10115366 + A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCGTTG------CCGCT-------TTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATAT------ATA----GAAA--TACACACAAATAAACAAAAA---T--ATT---ATAAAAAGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAATTAC---------------------------TTAAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACAAACG--------------------------------------------------------TAAAGC--CTCGATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------T
droEre2 scaffold_4770:9648541-9648775 + A-----------------TCGCGTTGTCGTCGCCGTCGCC---G------------C---T----GCTTTT----GTGCC--TG--TGTTTGTGAGTGCCGAA---------------ATCATG--AATATAC--ACATC----GTGATATACACA--TA--TACG--AA---T--ATT---A--AAGCGAAG-AGTTGCTGTTCAGTGAAATATACG--CACAACTGCT-------------AAACTA---------CTAAAGTTAGAGAA------CGC-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAGCGAC--GAGCATCT-GG----------------------------------------------A--CTCAATTGTGTGT--ATTTA--CACGCGGTGA-----TC------------T-----------------------------------------G
droYak3 3R:16331919-16332168 - A-----------------TCGCGTTGTCGTCGCCGTCGCC---G---------------CT-------TTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATACAC--ATATACGACGC-A--TACACATAAATGTACA--AA---T--TTT---AT-AAACGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC----------TAAACCA---------CTAAACTTAGAGAA------CGG-------------------------------------------------------------CTA----CT--G-------------TCGTTGCCATGGGACAAGCGAC--GAGCATCT-GGAC---------------------------------------TCAA----CTCAATTGTGTGT--ATTTA--CACTCGGTGCGGTGATC------------------------------------------------------T
droEug1 scf7180000409584:408374-408619 - A-----------------CCGCGTTGTCGCCGCTGTCGTCGTCGTAGTC---G---TCGCT-------GTT----GTATC--TG--TGTTTGTGAGTGCCAAA---------------AAGGAAAT-A--TAT----------------ATATA--------------TATAATA---T---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATTTAAACACAACAACTAC--TGCTAGACTA-----A-----------AAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGCCAGGGGACTAACGGC--GAGCATCT-GGAC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TCTG----------------------------------------------------T
droBia1 scf7180000302402:2913582-2913826 + A-----------------CCGCGTTGTCGTCGCCGCCGCC---GCCGCCG------CCGCT----GC-CTT----GTATCTCTG--TGTTTGTGAGTGCCGAA---------------AAGTAA-C-A--GA-A--------------TC--CACA-------------C---T--ATT---AA-AAAAGAAG-AGTTGCTATTAAGCGAAATATATA--CACA-C-------ACGGCGAACTAAACTAAAAGTTGGGCTAAAGTAGGAGAA------CGC-----------------------------------TGG-----------------------CGG----TT--G-------------TTGTTGCCAGG-GCCGATCG-----------------------------------------------------GCA-AAGGC--CCCAATTGTGTGT--ACT-G--CACTCGGCGC-----TCGGTG-TGCGC--C-----------------------------------------A
droTak1 scf7180000415380:1036675-1036903 + A-----------------TCGCGTTGTCGCCGCCTCCGTCGTCGTCGTC---G---CCGCT----GCCTTT----GTATCTGTG--TGTTTGTGAGTGCCGAA---------------AAGGAA-AAATAAA-A--------------TATATA-------------------CAT--A---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATACA--CACAACAACT-------------A-----A-----------AAGTTAGAGAA------CGC-----------------------------------TTA-----------------------CGA----TT--G-------------TTGTTGCCATGC------------GAGCATCT-GGTC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTTC-----G----------C--C-----------------------------------------G
droEle1 scf7180000491047:1036182-1036406 - A-----------------TCGCGTATTCGCCGCTGTCGCC---G---------------CTCTTTGCTTGT----GTG-C--TG--TGTTTGTGAGTGCCGAA---------------AAA------ATACAT----------------ATATA----------------TAA-----A---AT-AAAAGAAG-AGCTGCTATTAAGTGAAATATATA--CACAACAACT-------------AAGCG-----------CAAAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGCCAAGGGGCAAACTAA--GAGCATCT-GGTC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TC---------C--C-----------------------------------------T
droRho1 scf7180000777841:9190-9421 + A-----------------TCGCGTTGTCGCCGCCGTCGCC---G---------------CTCTTTGCTTGT----GTG-C--TG--TGTTTGTGAGTGCCGAA---------------AAGAAA--AATAT------------------ATACACA--------------T-ATATATT---A----AAAAAG-AGTTGCTATTAAGTGAAAAAATTATACACAACAACT-------------AAGCGAA-----------TAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGTCAAGGGGCAAACGAA--TAGCATCT-GGTG-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TA---------C--C-----------------------------------------T
droFic1 scf7180000453912:603094-603326 + A-----------------TCGCGTTGTCGCCGCCGTCGTCGTATTTGTC---GTCGCCGCT-------TTT----GTATCTGTG--TGCTTGTGAGTGCCGAA---------------ATGGAA-A-A--AA-A--------------TA-----------------------TAT--A---AT-A---AAAG-AGTTGCTATTAAGTGAAATATATACACACAACAACT-------------AAGCCAA-----------AAGTTAGAGAA------CGT-------------------------------------------------------------TTG----CT--G-------------TTGTTGCCAAGGGGCAAACGAG--GAGCATCT-GGTG-----------------------------------GGCATAAAGC--CCCGATTGTGTGG--ATTTA--CACTCGGTGC-----T----------C--C-----------------------------------------C
droKik1 scf7180000302466:557356-557582 - C-----------------TCGCGTTGTCGCCGCTGTCGTC---T---------------------GCTTGT----GA------G--CGAGTGTGAGTGCCGAA---------------AAAGCA--AAGCCAAATTCAAA----GAA---G----AGAAATAGTTTAAAATAAAAT--G---AT---AAAAAG-AGTTGCTATTAAGTGAAATATATA--CA------------------------------------------TTAGAAAACGAAAACAC-----------------------------------TGA--CGAA----------AAATGG-TTA----CT--GTGTGTTGTGCTGTGTGTTGCCAGGC------------AAGCATCT-GTTCT----------------------------------GGAATAAAGCCTCTCGATTGTGT-----------------------------------------------------------------------------------
droAna3 scaffold_13340:21555075-21555356 - CTT-CTCTCA-CCTTCGCTCGCGTTGTCGCCGCCGG------------------------T----TATTTG----GTGTGTGTT--TGTGTGTGAGTGCCAAA---------------AAGAAA-TAATAT------AAA----GATAT-TATACAAAAATTAACAAAAA-------AG----A-AAAAGTAA-AGTTGCTATTGAGTGAATGAAAAA--AAAAAAAACAAATATACCTGATTA-----T-----------ACATTAGTAAA------CGG-------------------------------------------------------------TTA----TAGCT-------------TTGTTGCCAAGCCAA-GTCAGC--GGGCATCT-GTTCCGTTCT----------GTTTGAAAGA----AAAAAAATAAAACGC--CTCAATTGTATATTTATTTA--CACTCTGTG---------------------------------------------------------------
droBip1 scf7180000396413:983161-983412 + CTT-CTCTCA-CCTTCGCTCGCGTTGTCGCCGCCGG------------------------T-------TAT----TTG-G--TGTGTTTGTGTGAGTGCCAAA---------------AAGAAA-T-T-TT------AAA----GATAT-TATA-AAAAATTAACAAAAA-------AG----A-AAAAGTAA-AGTGGCTATTGAGTGAAAAAAAAA--AA-A-T-------ATCCCCGACTA-----T-----------ACATTAGTAAA------CGG-------------------------------------------------------------TTA----TAGCT-------------TTGTTGCCAAGCCAA-GTCAGC--GGGCATCT-GTTCCGTTCT----------GTT---AAG-----------AAAAAAAAC--ACCAATTGTAT----ATTTA--CACTCTGTG---------------------------------------------------------------
dp5 2:12973030-12973288 + C---------------GCTCGCGTTGTCGCCGCCGTCGTC---GT---------------T--------CT----AA------A--TTTGTGTGAGTGTCGAA---------------AAGAAA-T-A--CAA----------------AAAA--------------AAATAATAT--A---AT-A---AAA--A------ATTAAGTGAAATAAACG--CA------------------ACTA-----A-----------ACATTAGAAAA------CGGGGCAAAAACCCGCTCTAGTTTGAGTTACGGTTAACTGT-----------------------TGA----CC--G-------------TTGTTGCCAAGCGT----GGCC--CGGCGTCGGGTCCCGTTCC----------GCA-GA--GACCAGACAATAATATAATGC--TTTAATTGTATAT--TTATA--TACTTACGTT-----T----------C--T-----------------------------------------G
droPer2 scaffold_0:7483137-7483405 - C---------------GCTCGCGTTGTCGCCGCCGTCGTC---GT---------------T--------CT----A------AG--TTTGTGTGAGTGTCAAA---------------AAGAAA-T-A--CA-------------------------------ACAAAAATAATAT--A---AT-A-AC-AA--A------ATTAAGTGAAATAAACG--CA------------------ACTA-----A-----------ACATTAGAAAA------CGGGGCAAAAACCCGCTCTAGTTTGAGTTACGGTTAACTGT-----------------------TGA----CC--G-------------TTGTTGCCAAGCGT----GGCC--CGGCGTCGAGTCCCGTTCCCGGATCGCCCGCA-GA--GACCAGAAAATAATATAATGC--TTTAATTGTATAT--TTATA--TACTTACGTT-----T----------C--T-----------------------------------------G
droMoj3 scaffold_6540:2351428-2351550 - A-----------------TTGCGTCGTCGTCGTCGTCGTC---GTCGTCGTCG---TCGTC-------G-TCAATG--TC--TA--TGTGTCTGAATTGCGTG---------------CAAATA--TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----T----------A--TACATACATACACATATATACATATACAAATATATATAAATAT
droGri2 scaffold_2805:1141-1429 - CCCACACTCCGCATCCCTTCGCGTTGTCGCCGCCCC-TTCGTCGTCGTC---T---TTGCT-------G-CCCA-GT-TT--TA--TTTGTGTGAGTGCCCAATGACTGCCCAGAAAAAAGAAA-------------------------------------------AAA---T----AAGAAA-AAAAGAAGCGGTTACCATTAA----AATATAC---------AACTAC--AGCCATAC-----------------------AAGAAAACACACACAC-----------------------------------ACACACCATAAATACACAGAAATCGCTTCGAAACG--AAG-CTTTGGCTTTGTGTTGCCAAGCGTCAAAAAGCAGCAGCATCT-GTTTCCATC--------------------------------CAACAATT--AATAATTGTATTT--ATTT------------------------------TAT-----------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCGTCG------CCGCT-------CTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATACATACATATA----GAAA--TACACACAAATAAACAAAAA---T--ATT---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC---------------------------TAAAGTTGGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAACG--------------------------------------------------------TGAAGC--CTCAATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................GTCGCCGTCGTC---GTCGTCG------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................CGTC---GTCGTCG------CCGCT-------CTT----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................................ATT---AT-AAAAGAAG-AGTTGCT........................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.......................................................................................GTTTGTGAGTGCCGAA---------------AAG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...............................................................................................................................................................................................................................................................................A------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCC..........................................................................................................................................................................1811.00100100000000000000
.........................................................................................................................................................................................................................................................................TGGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATG.......................................................................................................................................................................2711.00100010000000000000
................................................CG------CCGCT-------CTT----GTATC--TG--TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................TTA----CT--G-------------TCGTTGCCATGGGAC...................................................................................................................................................................2111.00101000000000000000
droSec2
A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCG---------CCGCT-------TTT----GTATC--TG--TGTTTGTGAGTTCCGAA---------------AAGATG--AATACATATATATA----AAAA--TACACACAAATAAACAAAAA---T--ATT---AT-AAATGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC---------------------------TAAAGCTGGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAACG--------------------------------------------------------TGAAGC--CTCAATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................AAAA---T--ATT---AT-AAATGAAG-AGTTGC.........................................................................................................................................................................................................................................................................................................................................................2411.0010001
...........................................GTCG---------CCGCT-------TTT----GTATC--TG--TGTTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................................................................TTGTGAGTTCCGAA---------------AAGATG--...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................CGAACG--------------------------------------------------------TGAAGC--CTCAATTGTGT...................................................................................2311.0010010
.......................TTGTCGTCGCCGTCGTC---GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
A-----------------TCGCGTTGTCGTCGCCGTCGTC---GTCGTTG------CCGCT-------TTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATAT------ATA----GAAA--TACACACAAATAAACAAAAA---T--ATT---ATAAAAAGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAATTAC---------------------------TTAAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACAAACG--------------------------------------------------------TAAAGC--CTCGATTGTGTGT--ATTTACACACTCGGTGA-----TCTGCGCTGCTCCTC-----------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
A-----------------TCGCGTTGTCGTCGCCGTCGTC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................T--ATT---ATAAAAAGAAG-AGTTGCTAT......................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACG--------------------------------------------------------TAAAGC--CTCGATTGT.....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................C---GTCGTTG------CCGCT-------TTT----GTATC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCGTTGTCGTCGCCGTCGTC---GTCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................CGCCGTCGTC---GTCGTTG------CCGCT-------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCCGTCGTC---GTCGTTG------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TC--TG--TGTTTGTGAGTGCCGAA---------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GTATC--TG--TGTTTGTGAGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTTG------CCGCT-------TTT----GTATC--TG--TGTTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................TTG------CCGCT-------TTT----GTATC--TG--TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................CAAACG--------------------------------------------------------TAAAGC--CTCGATT.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AAAAAGAAG-AGTTGCTATTAAGT.................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GAAG-AGTTGCTATTAAGTGAAA.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACG--------------------------------------------------------TAAAGC--CTCGATTGTGTT..................................................................................2211.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTTG------CCGCT-------TTT----GTATC--TG--TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GTCGTCGCCGTCGTC---GTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................GAA---------------AAGATG--AATAT------ATA----GAAA--T..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGTC---GTCGTTG------CCGCT-------TTT----GTATC--TG--TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCGCCGTCGTC---GTCGTTG------CCGCT-------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACACTCGGTGA-----TCTGCGCT.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................A----CT--G-------------TCGTTGCCATGGGA....................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTTGTCGTCGCCGTCGTC---GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCCGTCGTC---GTCGTTG------CCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATC--TG--TGTTTGTGAGTGCCGAA---------------AAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................GCGTTGTCGTCGCCGTCGTC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TC--TG--TGTTTGTGAGTGCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGTC---GTCGTTG------CCGCT-------TTT----G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GCCATGGGACAAACG--------------------------------------------------------TAAAGC--CTCGAT........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACG--------------------------------------------------------TAAAGC--CTCGATTGTGT...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................TTA----CT--G-------------TCGTTGCCATGGGACAAACG--------------------------------------------------------T.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CAAACG--------------------------------------------------------TAAAGC--CTCGATTGTGT...................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------------------------TAAAGC--CTCGATTGTGT...................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TG------CCGCT-------TTT----GTATC--TG--TGTTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
A-----------------TCGCGTTGTCGTCGCCGTCGCC---G------------C---T----GCTTTT----GTGCC--TG--TGTTTGTGAGTGCCGAA---------------ATCATG--AATATAC--ACATC----GTGATATACACA--TA--TACG--AA---T--ATT---A--AAGCGAAG-AGTTGCTGTTCAGTGAAATATACG--CACAACTGCT-------------AAACTA---------CTAAAGTTAGAGAA------CGC-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGGACGAGCGAC--GAGCATCT-GG----------------------------------------------A--CTCAATTGTGTGT--ATTTA--CACGCGGTGA-----TC------------T-----------------------------------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................GTGCC--TG--TGTTTGTGAGTGCCGAA---------------AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000200
......................................................................................................................................................................................................................................................................................................................................................TTA----CT--G-------------TCGTTGCCATGGGACGAGC...............................................................................................................................................................2511.0010000100
...............................................................................................................................................................A--TACG--AA---T--ATT---A--AAGCGAAG-AGTTGCT........................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.......................................................................................................................................................................................................................................................................................GC-------------------------------------------------------------TTA----CT--G-------------TCGTTGCCATGGG.....................................................................................................................................................................2111.0010000010
....................................CGCC---G------------C---T----GCTTTT----GTGCC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.....................................................................................................................................................................................................................ATACG--CACAACTGCT-------------AAACTA---------CTAAAGTT.......................................................................................................................................................................................................................................................................................2911.0011000000
.................................................................................................................................ATAC--ACATC----GTGATATACACA--TA--TAC............................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................................................................................................................ATAC--ACATC----GTGATATACA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.......................................................................................GTTTGTGAGTGCCGAA---------------ATCATG--...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................................................................................................................................................................................GAAG-AGTTGCTGTTCAGTGAAATATAC........................................................................................................................................................................................................................................................................................................................................2711.0010000100
......................GTTGTCGTCGCCGTCGCC---G------------C---T----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGTGTGT--ATTTA--CACGCGGT................................................................2611.0010000100
droYak3
A-----------------TCGCGTTGTCGTCGCCGTCGCC---G---------------CT-------TTT----GTATC--TG--TGTTTGTGAGTGCCGAA---------------AAGATG--AATACAC--ATATACGACGC-A--TACACATAAATGTACA--AA---T--TTT---AT-AAACGAAG-AGTTGCTATTAAGTGAAATATATG--CACAACAACTAC----------TAAACCA---------CTAAACTTAGAGAA------CGG-------------------------------------------------------------CTA----CT--G-------------TCGTTGCCATGGGACAAGCGAC--GAGCATCT-GGAC---------------------------------------TCAA----CTCAATTGTGTGT--ATTTA--CACTCGGTGCGGTGATC------------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................CGTTGCCATGGGACAAGCGAC--GAGC......................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCATCT-GGAC---------------------------------------TCAA----CTCAATTGTGT...................................................................................2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................TGCCATGGGACAAGCGAC--GAGC......................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCT-GGAC---------------------------------------TCAA----CTCAATTGTGTGT--...............................................................................2511.00100000010000
......................................................................................................................................................................................................................................AC----------TAAACCA---------CTAAACTTAGAGAA------CG.........................................................................................................................................................................................................................................................................2511.00100000010000
........................................................................................................................................................................................................................................................................TTAGAGAA------CGG-------------------------------------------------------------CTA----CT--G-------------TCGT..............................................................................................................................................................................2111.00100000010000
.............................................................................ATC--TG--TGTTTGTGAGTGCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................AC--GAGCATCT-GGAC---------------------------------------TCAA----CTCAATTGTGT...................................................................................2911.00110000000000
.................................CGTCGCC---G---------------CT-------TTT----GTATC--TG--TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEug1
A-----------------CCGCGTTGTCGCCGCTGTCGTCGTCGTAGTC---G---TCGCT-------GTT----GTATC--TG--TGTTTGTGAGTGCCAAA---------------AAGGAAAT-A--TAT----------------ATATA--------------TATAATA---T---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATTTAAACACAACAACTAC--TGCTAGACTA-----A-----------AAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGCCAGGGGACTAACGGC--GAGCATCT-GGAC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TCTG----------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------CCGCGTTGTCGTCGCCGCCGCC---GCCGCCG------CCGCT----GC-CTT----GTATCTCTG--TGTTTGTGAGTGCCGAA---------------AAGTAA-C-A--GA-A--------------TC--CACA-------------C---T--ATT---AA-AAAAGAAG-AGTTGCTATTAAGCGAAATATATA--CACA-C-------ACGGCGAACTAAACTAAAAGTTGGGCTAAAGTAGGAGAA------CGC-----------------------------------TGG-----------------------CGG----TT--G-------------TTGTTGCCAGG-GCCGATCG-----------------------------------------------------GCA-AAGGC--CCCAATTGTGTGT--ACT-G--CACTCGGCGC-----TCGGTG-TGCGC--C-----------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------TCGCGTTGTCGCCGCCTCCGTCGTCGTCGTC---G---CCGCT----GCCTTT----GTATCTGTG--TGTTTGTGAGTGCCGAA---------------AAGGAA-AAATAAA-A--------------TATATA-------------------CAT--A---AT-AAAAGAAG-AGTTGCTATTAAGTGAAATATACA--CACAACAACT-------------A-----A-----------AAGTTAGAGAA------CGC-----------------------------------TTA-----------------------CGA----TT--G-------------TTGTTGCCATGC------------GAGCATCT-GGTC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTTC-----G----------C--C-----------------------------------------GSizeHit CountTotal NormTotal
No Reads
droEle1
A-----------------TCGCGTATTCGCCGCTGTCGCC---G---------------CTCTTTGCTTGT----GTG-C--TG--TGTTTGTGAGTGCCGAA---------------AAA------ATACAT----------------ATATA----------------TAA-----A---AT-AAAAGAAG-AGCTGCTATTAAGTGAAATATATA--CACAACAACT-------------AAGCG-----------CAAAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGCCAAGGGGCAAACTAA--GAGCATCT-GGTC-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TC---------C--C-----------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------------TCGCGTTGTCGCCGCCGTCGCC---G---------------CTCTTTGCTTGT----GTG-C--TG--TGTTTGTGAGTGCCGAA---------------AAGAAA--AATAT------------------ATACACA--------------T-ATATATT---A----AAAAAG-AGTTGCTATTAAGTGAAAAAATTATACACAACAACT-------------AAGCGAA-----------TAGTTAGAGAA------CGG-------------------------------------------------------------TTA----CT--G-------------TTGTTGTCAAGGGGCAAACGAA--TAGCATCT-GGTG-----------------------------------GGCATAAAGC--CTCAATTGTGTGT--ATTTA--CACTCGGTGC-----TA---------C--C-----------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
A-----------------TCGCGTTGTCGCCGCCGTCGTCGTATTTGTC---GTCGCCGCT-------TTT----GTATCTGTG--TGCTTGTGAGTGCCGAA---------------ATGGAA-A-A--AA-A--------------TA-----------------------TAT--A---AT-A---AAAG-AGTTGCTATTAAGTGAAATATATACACACAACAACT-------------AAGCCAA-----------AAGTTAGAGAA------CGT-------------------------------------------------------------TTG----CT--G-------------TTGTTGCCAAGGGGCAAACGAG--GAGCATCT-GGTG-----------------------------------GGCATAAAGC--CCCGATTGTGTGG--ATTTA--CACTCGGTGC-----T----------C--C-----------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
C-----------------TCGCGTTGTCGCCGCTGTCGTC---T---------------------GCTTGT----GA------G--CGAGTGTGAGTGCCGAA---------------AAAGCA--AAGCCAAATTCAAA----GAA---G----AGAAATAGTTTAAAATAAAAT--G---AT---AAAAAG-AGTTGCTATTAAGTGAAATATATA--CA------------------------------------------TTAGAAAACGAAAACAC-----------------------------------TGA--CGAA----------AAATGG-TTA----CT--GTGTGTTGTGCTGTGTGTTGCCAGGC------------AAGCATCT-GTTCT----------------------------------GGAATAAAGCCTCTCGATTGTGT-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CTT-CTCTCA-CCTTCGCTCGCGTTGTCGCCGCCGG------------------------T----TATTTG----GTGTGTGTT--TGTGTGTGAGTGCCAAA---------------AAGAAA-TAATAT------AAA----GATAT-TATACAAAAATTAACAAAAA-------AG----A-AAAAGTAA-AGTTGCTATTGAGTGAATGAAAAA--AAAAAAAACAAATATACCTGATTA-----T-----------ACATTAGTAAA------CGG-------------------------------------------------------------TTA----TAGCT-------------TTGTTGCCAAGCCAA-GTCAGC--GGGCATCT-GTTCCGTTCT----------GTTTGAAAGA----AAAAAAATAAAACGC--CTCAATTGTATATTTATTTA--CACTCTGTG---------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................GTTGCCAAGCCAA-GTCAGC--..........................................................................................................................................................1912.002000002
..................................GG------------------------T----TATTTG----GTGTGTGTT--TGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........CCTTCGCTCGCGTTGTCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....CTCTCA-CCTTCGCTCGCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................GTCGCCGCCGG------------------------T----TATTTT----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..................................GG------------------------T----TATTTG----GTGTGTGTT--TGTGTGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...............................................................................GTGTT--TGTGTGTGAGTGCCAAA---------------AAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droBip1
CTT-CTCTCA-CCTTCGCTCGCGTTGTCGCCGCCGG------------------------T-------TAT----TTG-G--TGTGTTTGTGTGAGTGCCAAA---------------AAGAAA-T-T-TT------AAA----GATAT-TATA-AAAAATTAACAAAAA-------AG----A-AAAAGTAA-AGTGGCTATTGAGTGAAAAAAAAA--AA-A-T-------ATCCCCGACTA-----T-----------ACATTAGTAAA------CGG-------------------------------------------------------------TTA----TAGCT-------------TTGTTGCCAAGCCAA-GTCAGC--GGGCATCT-GTTCCGTTCT----------GTT---AAG-----------AAAAAAAAC--ACCAATTGTAT----ATTTA--CACTCTGTG---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
C---------------GCTCGCGTTGTCGCCGCCGTCGTC---GT---------------T--------CT----AA------A--TTTGTGTGAGTGTCGAA---------------AAGAAA-T-A--CAA----------------AAAA--------------AAATAATAT--A---AT-A---AAA--A------ATTAAGTGAAATAAACG--CA------------------ACTA-----A-----------ACATTAGAAAA------CGGGGCAAAAACCCGCTCTAGTTTGAGTTACGGTTAACTGT-----------------------TGA----CC--G-------------TTGTTGCCAAGCGT----GGCC--CGGCGTCGGGTCCCGTTCC----------GCA-GA--GACCAGACAATAATATAATGC--TTTAATTGTATAT--TTATA--TACTTACGTT-----T----------C--T-----------------------------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................CGCGTTGTCGCCGCCGTCGTC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
C---------------GCTCGCGTTGTCGCCGCCGTCGTC---GT---------------T--------CT----A------AG--TTTGTGTGAGTGTCAAA---------------AAGAAA-T-A--CA-------------------------------ACAAAAATAATAT--A---AT-A-AC-AA--A------ATTAAGTGAAATAAACG--CA------------------ACTA-----A-----------ACATTAGAAAA------CGGGGCAAAAACCCGCTCTAGTTTGAGTTACGGTTAACTGT-----------------------TGA----CC--G-------------TTGTTGCCAAGCGT----GGCC--CGGCGTCGAGTCCCGTTCCCGGATCGCCCGCA-GA--GACCAGAAAATAATATAATGC--TTTAATTGTATAT--TTATA--TACTTACGTT-----T----------C--T-----------------------------------------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................TAACTGT-----------------------TGA----CC--G-------------TTGTTGCC..........................................................................................................................................................................2112.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGATCGCCCGCA-GA--GAC..................................................................................................................1811.001010000
droMoj3
A-----------------TTGCGTCGTCGTCGTCGTCGTC---GTCGTCGTCG---TCGTC-------G-TCAATG--TC--TA--TGTGTCTGAATTGCGTG---------------CAAATA--TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-----T----------A--TACATACATACACATATATACATATACAAATATATATAAATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCCACACTCCGCATCCCTTCGCGTTGTCGCCGCCCC-TTCGTCGTCGTC---T---TTGCT-------G-CCCA-GT-TT--TA--TTTGTGTGAGTGCCCAATGACTGCCCAGAAAAAAGAAA-------------------------------------------AAA---T----AAGAAA-AAAAGAAGCGGTTACCATTAA----AATATAC---------AACTAC--AGCCATAC-----------------------AAGAAAACACACACAC-----------------------------------ACACACCATAAATACACAGAAATCGCTTCGAAACG--AAG-CTTTGGCTTTGTGTTGCCAAGCGTCAAAAAGCAGCAGCATCT-GTTTCCATC--------------------------------CAACAATT--AATAATTGTATTT--ATTT------------------------------TAT-----------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................TTCGCGTTGTCGCCGCCCC-TTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..........GCATCCCTTCGCGTTGTCGCCGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/19/2015 at 02:59 PM