ID:

dsi_30633

 Coordinate:

2r:5828143-5828292 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.1 -33.0

Flybase annnotation

CDS [2r_5828293_5828487_-]; exon [2r_5828293_5828487_-]; intron [2r_5825790_5828292_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAGGTGCTCACCGGCATCCCATCGTTTGCCTTTCCCTGCGACACAACAAGGTGCGTATGCGGGCGGGGATTATAAACTGGTTCCCAGTAGGTTTCATGTATGACAGCTGTGGAATATATCCATTTGACCTACTGATTCACAGGATGAAAGATACACACATCCACTTTTGTGTAGGACAGGTTCGTTAAAACTAAACTAACAAAAACCCATATGGCTGCCACATCCCAGTTTATGTACGATCTAGATCAAA
**************************************************........((((((.(((((((.....)))))))(((((((((..((((((..((....))..))))))......)))))))))...(((((((((...........))))).....))))........))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................................................TTGTGTAGGATAGGT..................................................................... 15 1 5 1.00 5 0 0 0 0 3 0 0 2
.....................................................................................................................................................................TTTGTGTAGGATAGGT..................................................................... 16 1 2 1.00 2 0 0 1 1 0 0 0 0
........................................................................................AGGTTTCATGTATGACAGCTG............................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................GGTTCCCAGTAGGTTTCA.......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....GCACACCGGCATCCCATGGT................................................................................................................................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0
...............ATCCTATCGTTTGCCT........................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................GTTTGTGTAGGATAGGT..................................................................... 17 2 12 0.17 2 0 0 1 1 0 0 0 0
....................................................................................................................................................................TCTTGTGTAGGATAGGT..................................................................... 17 2 7 0.14 1 0 0 0 0 0 1 0 0
...........................................................................................................................TTGAACTACTGATTC................................................................................................................ 15 1 10 0.10 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................CTCTTGTGTAGGATAGGTG.................................................................... 19 3 10 0.10 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................TGTAAGCCAGGTTGGTTAAA............................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0
................................................................................................................AACATATCCATCTGACC......................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 1 0 0
....................................................................................................TGACAGGTGTAGAATA...................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CTCCACGAGTGGCCGTAGGGTAGCAAACGGAAAGGGACGCTGTGTTGTTCCACGCATACGCCCGCCCCTAATATTTGACCAAGGGTCATCCAAAGTACATACTGTCGACACCTTATATAGGTAAACTGGATGACTAAGTGTCCTACTTTCTATGTGTGTAGGTGAAAACACATCCTGTCCAAGCAATTTTGATTTGATTGTTTTTGGGTATACCGACGGTGTAGGGTCAAATACATGCTAGATCTAGTTT
**************************************************........((((((.(((((((.....)))))))(((((((((..((((((..((....))..))))))......)))))))))...(((((((((...........))))).....))))........))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.................................................................................AGGGTCATCCAAAGTACATAC.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................TAAACTGGATGACTAAGTGT............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................TGCAATGTGTGTAGGTGAAAA.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................TCCTGTCCAAGCAATTTTGAT......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAGGGTCAAATACATGCTAGA........ 21 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................ATGGGTAAACTGGATGACTAA................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................ACACCTTATATAGGTAAACTG.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
.....................................................................................CCATCCAAAGTACATACTGTC................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................AGGTAAACTCTATGACCAAGT............................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1
....................................................................................................ACTGTCGACACCCTAT...................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 1 0
...................................................ACGCATGCGCCAGCCCC...................................................................................................................................................................................... 17 2 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................ACTGTCGACACCCTA....................................................................................................................................... 15 1 17 0.12 2 0 0 1 0 0 0 1
...................................................................................................................................................................................................................................CAAATCCATGCCAGATAT..... 18 3 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTGATTTGATGGTTT............................................... 15 1 20 0.05 1 0 0 1 0 0 0 0
CGCCACGAGTTGCCGGAGG....................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/24/2015 at 12:40 AM