dsi_30617

CDS [3r_11091791_11091838_-]; five_prime_UTR [3r_11091839_11091881_-]; exon [3r_11091791_11091881_-]; intron [3r_11091882_11093144_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAATCTTGTTTGATGGCAGCCACCGAAAAAAAAGAAACAAGAAACATGTACCAAGAAATCTCGAAAAAAGTTAATTGTTTCATAATTGCGGAGTGAATTCAGCTGATTACGGGACAGACAAAAACCAAAACGAACCAAAGTTAATTGCTATCAGTGAGTGCAGTGACCGTACTTAGTATATTTTATGTTCTTCGATGCAGGCGATCCAGTGTGAAAAGCAGAAAAACAGACAAGCCCACGGAAATGGATT **********************************************************************************..(((((..((.(((((.(((((..(((....(((....................)))..)))..)))))))))).))....)))))*****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553485 Chicharo_3 day-old ovaries
....................................................................................ATTGCGGAGTGAATTCAGC...................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................ATCAGTGAGTGCAGTGACCGTA...............................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...........................................................................................AGTGAATTCAGCTGATTACGGGAC.......................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GATCCAGTGTGAAAAGCA..............................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................AATTCAGCTGATTACGGGACAGACA..................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................GATCCAGTGTGAAAAGCAGAAAAAC.......................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................GAATTCAGCTGATTACGGGAC.......................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................TCCAGTGTGAAAAGCAGAAAAACAGA....................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................GTTTGCGATCCAGTGTGAAAAGCA..............................	24	3	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AACAGACAAGCCCACGGA........	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.....................................................................................TTGCGGCGTGACTTCGGCT..................................................................................................................................................	19	3	20	0.40	8	0	0	0	0	0	0	8	0	0
.....................................................................................TTGCGGCGTGACTTCGGCTG.................................................................................................................................................	20	3	8	0.25	2	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................AACAGAACAACAGACATGCCC.............	21	3	4	0.25	1	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................TCTTCGATGCGTGCGATC............................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0
..............................................................................................GAATGCAGCTGATTTTGGGAC.......................................................................................................................................	21	3	5	0.20	1	0	1	0	0	0	0	0	0	0
.......................................ACAAGCATGTACCAAGA..................................................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................AGTGGTCGTACTTAGTAGA......................................................................	19	3	10	0.10	1	0	0	0	0	0	0	1	0	0
...............................................................................................AATTCAGCCGATAGCGGGA........................................................................................................................................	19	3	12	0.08	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................ATATGTTATGTTCTTGGATC.....................................................	20	3	15	0.07	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................GTTAGTTGCTATCAGG...............................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0	0
......................................................................................TGCGGCGTGACTTCGGCTG.................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0

GTTAGAACAAACTACCGTCGGTGGCTTTTTTTTCTTTGTTCTTTGTACATGGTTCTTTAGAGCTTTTTTCAATTAACAAAGTATTAACGCCTCACTTAAGTCGACTAATGCCCTGTCTGTTTTTGGTTTTGCTTGGTTTCAATTAACGATAGTCACTCACGTCACTGGCATGAATCATATAAAATACAAGAAGCTACGTCCGCTAGGTCACACTTTTCGTCTTTTTGTCTGTTCGGGTGCCTTTACCTAA *****************************************************************************..(((((..((.(((((.(((((..(((....(((....................)))..)))..)))))))))).))....)))))**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head
...............................................................................................TTAAGTCGGCTATCGCCCTG.......................................................................................................................................	20	3	3	0.33	1	1	0	0
..........................................................................................................................TTGGTTTTTGTTGGTTTCA.............................................................................................................	19	2	13	0.08	1	0	1	0
.................................................................................................................................................................................................................................TCTCAGTTCGGGTGCCCTT......	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:11091832-11092081 -	dsi_30617	CAATC-TTGTTTGATGGCAGCCACCGAAAAAAAAGAAA--------C--AAGAAACAT--GTACCAAGAAATCTCGA-------------AAAAA--------------------------GTTAATTGTTTCATAATTGCGGA-G--------TGA---------------ATTCAGCTGATTACGG-GACAGACAA--------------AAACCAA-A--ACGAACC--------------------------------------------AAAGTTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACAAGC--CC-ACGGAAATGGATT
droSec2	scaffold_0:11923455-11923701 -		CAACA-TTGTTTGATGGCAGCCACCGAAAAAAAA---A--------C--AAGAAACAT--GTACTAAGAAATCTCGA-------------CAAAA--------------------------GTTAATTGTTTCATAATTGCGAA-G--------TGA---------------ATTCAGCTGATTACGG-GACAGACAA--------------AAACCAA-A--ACGAACC--------------------------------------------AAAGCTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACGAGC--CC-ACGGAAATGGATT
dm3	chr3R:10116235-10116501 +		CAACC-TCGTTTGATGGCAGCCACCGAAAAAAAA-A-A-------CC--AAGAAACAT--GTACCAAGAAATCTCGA-------------CAAAAAAAAA-AATAC-CC------ACAGCGTTTAATTGTTTCATAATTGCGGA-G--------TGA---------------ATTCAGCTGATAACGG-GACAGACAA--------------AAACGAA-A--ATGAACC--------------------------------------------AAAGTTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACAAGC--CC-ACGGAAATGGATT
droEre2	scaffold_4770:9649519-9649760 +		CAACC-GCGTTTGATGGCAGCCACCGAATAAAAA---------------AAGAAACAC--GAATCAAGAAATCTCGA-------------A--------------------------ATCGTATAATTGTTTCATAATTGTGGC-GCAA-----ATG---------------------------ATGT-GG------------------------CCAA-G--ACGAATT--------------------------------------------TAAGTTAAT-TGCT--GGCAGTGAGTGCAGT---------------GTACTTAGTA-----T--TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG--------AA------------------------------------GAGCAGAG-----AGCAGAAAAACAGAAGT-ACAGAT-------A-A--ACAGGCAAGC--CC-ACGGAAATGGATT
droYak3	3R:16330824-16331124 -		CAACT-ATGTTTGATGGCAGCCACCGAAAAGAAA---A-------CA--AAGAAACAT--GAAAC-AGAAATCTCGAAATCT------------------------------GGAAATGCGTTTAATTGTTTCATAATA-----------------T--ATA------------------------------------------------------------------AT----A-ATAATAACTACAAAATAATAATAAAACCAAAACGAACTTGAGTAAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----T--TTTTATGTTCTTC--GATGCAGGCGATCGTCCAGTG--------AAAATCTGAAACAGAAGCTGAAAAGCGGAAAAGCTGAAAAGCGGA------------AAAACGGAAAA-ACAG-----------A--ACAGACAAGC--CC-ACGGAAATGGATT
droEug1	scf7180000409584:407163-407445 -		CAACG-CCGTTTGATTGCAGCCACCGAAAGAGA-----------------AAAAACAG--ATATCAAGACATCAAGT-----AA------CAAAA--AAA--AAACCCCA--CGAACAGCGCTTAATTGTCTCATAATTGTGGAAA--------TAT---------------ATTCAGCTGATTATGA-GAGAGACAAGCCAACAGATACACAAACAGA-A--ACAA-------A----------------------------------------AACCAAATTAATT--ATCAGTGAGTGGAGTGACC-----------GTACTTAGTA-----TT-TTTTATGTTCTTC--GATTCAGGCGAT---CCAGTA-T-----------------------------------------AA-AAACAGAG-------------------AA-A-----AAAGCAG---AC-----AAAAAC--TC-ACGGAAATGGATT
droBia1	scf7180000302402:2915097-2915333 +		CAACG-CCGCTTGATTGCAGCCGCCGAAAAAACCGAAA--------T--AA---AAAG--CTGCCAAGACACCTCA----------------------AA--AGCCCCCA--CGAACAGGG--GAATTGTTTCATA-------------------------------------TTCGGCTGATTGTGG-GACAGGCAG--------------AAGGCAA-AAAAC----A--------------------------------------------AAAATTAAT-TATT--GTCAGTGAGTGGAGCGACC-----------GTACTTAGTA-----T--TTTTATGTTCTCC---ATGCAGGCGAC---CCGGTA-C--------------------------------------------CAGCAGA-----------------------------A---------A--ACACACAACT--TC-ACGGAAATGGATT
droTak1	scf7180000415380:1037902-1038152 +		CAACG-ATGTTTGATTGCAGCCACCGAAAAAAGGGCAA--------G--AAAAAACAG--ATA-----------------------------------AA--ATTCCCCA--CGAACAGCGGTTAATTGTTTCATAATTGTGGAAA--------TAT---------------ATTCAGCTGATTATGC-GACAGACGT--------------AGAACAA-AAAATAAAAT--------------------------------------------AATATTAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GTACTGAGTA-----TT-TTTTATGTTCTTC--AATGCAGGCGAT---CCAGTA--------------------------------------------ATAAGCAGA-----------------------------A-------A-A--ACAGACAAAT--TC-ACGGAAATGGATT
droEle1	scf7180000491047:1035135-1035381 -		CAACG-ATGTTTGATTGCAGCCACCGAAAAAA-----------------------CAG--ATATCAAGA---CTCAA-------------A------AAA--AAACCCCA--AGACAAGTGGTTAATTGTTTCATAATTGTGGAAA--------CAC---------------ATTCAGCTGATTATGA-GACGAACAA--------------AAAA-------ACAA-------A----------------------------------------AAAATAAT-TATT--ATCACCGAGTGGAGTGACC-----------GTACTTAGTACTTACTT-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTA--------------------------------------------ATAAACAGA-----------------------------A-------A-A--ACAGACAAAT--TC-ACGGAAATGGATT
droRho1	scf7180000777841:10285-10530 +		CAACG-TTGTTTGATTGCAGCCACCGAAAAAA-----------------------CAG--ATACCAAG---TCTTGA-------------ATA----AAAAAACCCCCCA--AGACCAGTCGTAAAATGTTTGATAATTGTGGAAA--------GAC---------------ATTCAGCTGATTGTGA-GACGGACGT--------------AAAG-------ACA--------A----------------------------------------AAAATAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GTACTTAGTA-----TT-CTTTATGTTCTTC--GATGCAGGCGAT---CCAGTA--------------------------------------------ATAAACAGA-----------------------------A-------AAA--ACAGACAAAT--TC-ACGGAAATGGATT
droFic1	scf7180000453912:604215-604463 +		CAACC-ACATTTGATTGCAGCCGCCAAAAAAAAA-AAA--------C-----ATACAT--ATATCAAGACATCCAA---------------------AAA--AAGCCCCA--CGAACAGCGTTTAATTGTTTCATAATTGTGGAAA--------TAC---------------ATTCGTCTTATAATGA-GACGGACAA--------------AAAACAA---------------A----------------------------------------AACGAAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GCACTTAGTA-----TT-TTTTATGTTCTTT--GATTCAGGCGAT---CCAGTA-A-----------------------------------------ACAAAACAGA-----------------------------G--------------AAACAAAT--TC-AAGGAAATGGATT
droKik1	scf7180000302466:556254-556459 -		CAACA-ATTTGTGATTGCAGCCACCGAAAAAGA--------------------GGCAG--ATACCAAGAAATTTGAG-------------G-G----AAA--AACCCCCAAGCAAACGAAGCTTGATTATTTAATAATTGTGGAAATAAATGAATAT---------------ATTCAGCTGATTATGA-A-----CA--------------------------------------------------------------------------------------------------------------------------------AATGA-----TT-TCTTATGTTCTTC--GATGCAGGCCAT---CCAGTA--------AA----------------------------------ATAAACC-----------------------------------------A--GCAGACAAAC--TC-ACGGAAATGGATT
droAna3	scaffold_13340:21554159-21554387 -		CAACA-AATTTTAATTGCAGCCACCGAAAAAAAG-AGA-------CC--AAGAAAAA--------------------------------------------------------------TGGTT-TTTGTTTTATAATTGTGGAAA--------TTT---------------ATTCAGCTGATTATTC-AGCGGACAA--------------AAAACAATA--ACAAACCACAAAT---------------------------------------AAATAAAT-AATT--ATCAGCGAGTGGAGTCATC-----------TTACTTAGTA-----TTTTCTTCTGTTCTTC--GATGCAGGCT-T---CAAGTG--------GAT--------------------------------TA----C----------------------------------------A-A--ACCGGAAAAG--TC-ACGGAAATGGATT
droBip1	scf7180000396413:984063-984300 +		CAACA-AATTTTAATTGCAGCCACCGAAAAAAATAAA----------------GCCAG--AGACCAAGAAA--------------------------------------------AAATGG-TT-TTTGTTTCATAATTGTGGAAA--------TTT---------------ATTCAGCTGATTATTC-AGCGGACAA--------------AAAACAATA--ACAAACCACAAAT---------------------------------------ACAATAAT-AATT--ATCAGACAGTGGAGTCGTC-----------TTACTCAGTA-----TTTTCTTATGTTCTTC--GATGCAGGCT-T---CGACTG--------GAT--------------------------------TGTA---------------------------------------------A--ACAGGAAAAC--TC-ACGGAAATGGATT
dp5	2:12973737-12973998 +		CAACGGAAATTTGATTGCAGCAAAAATAAAACAA-ATAA-------ATAA--A--TAAATATA------------T-AATCA-------------------------------------CG--GAATAGTTCCATAATTGTGTAAGAAA-----AATATGTAA--ATGAACAATAGAATTGATAAAGAAGGCGAATAA--------------AAA--------ACAT------AAT----------------------------------------GCGTATA-TTTT--ATATGTGAGTGAGGTGCCC-----CCACAAATACTAAGTA-----TT-TTTTATGTTCTTC----TTCAGTTG---------TA-TAAAGAGAAT------------------------------------------ATTGAGATCAA-----TA------AACCA-----CC----TTAAAG----ATA-CA-CCGGAAATGGATT
droPer2	scaffold_0:7482462-7482713 -		CAACGGAAATTTGATTGCAGCAAAAATAAAAA-----------------A--A--TAAATATA------------T-AATCA-------------------------------------CG--GAATAATTCCATAATTGTGTAAGAAA-----AATATGTAA--ATGAACAATAGAATTGATAAAGAAGGCGAATAA--------------AAA--------ACAT------AAT----------------------------------------ACGTATA-TTTT--ATATGTGAGTGAGGTGCCC------CACAAATACTAAGTA-----TT-TTTTATGTTCTTC----TTCAGTTG---------TA-TAAAGAGAAG------------------------------------------ATTGAGATCAA-----TA------AACCA-----CC----TAAAAG----ATA-CA-CCGGAAATGGATT
droWil2	scf2_1100000004902:3333394-3333481 -		TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGCA-----TA-TTTTACGTTTTCA--GTTGTCAAAAAT----------------AAAA------------------------------------------ACAAAACCC---------AAACA-AAAGA-----CC---ACAAAAG----ATCACAGACGGAAATGGATT
droVir3	scaffold_12822:902986-903090 +		CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAGAA-----TA-CTTTACGTTTTCCTTCACGCAGATCTT---TCA----TA-----AAG------------------------------------CCCAAAATCAACAACAA-----CAACAGC-AACAA-----CA---ACAAAAGATAA----AC-GCGGAAATGGATT
droMoj3	scaffold_6540:33566095-33566182 +		TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAT-----AA-GTTTACGTCTTTA--TACGCAGATTAA---TCA----TA-----AAG------------------------------------ACCAAAA--------------------A-T-----AACTACGAC-A--ACAACAAAAG--AC-GCGGAAATGGATT
droGri2	scaffold_15074:2893014-2893263 -		TATTA-TTATTAGCTTGAAATAAGAGCAAAGACCCATAAAAGAAATG--AAGAAATAT--------------CTCAGA----AATGTATCAAAAA--------------------------GTTC--------------GTG--------------------ACCAAAGTCAAAACAGTTGATTCATA-GTCGCAAAA--------------AATCTAAAA--ACAT--------T----------------------------------------TCGAAAA-ATTCAATTGTGAGAGTGCTGTGAATTATTTAT----GTAATTACTTAGAT-TTTTTTTATGTTTTTA--CATGCAGA---T---TCAGTCATA-----AAG------------------------------------AACA-----------------------------------------A--ACAACAAAAG--AC-GCGGAAATGGATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAATC-TTGTTTGATGGCAGCCACCGAAAAAAAAGAAA--------C--AAGAAACAT--GTACCAAGAAATCTCGA-------------AAAAA--------------------------GTTAATTGTTTCATAATTGCGGA-G--------TGA---------------ATTCAGCTGATTACGG-GACAGACAA--------------AAACCAA-A--ACGAACC--------------------------------------------AAAGTTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACAAGC--CC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................ATTGCGGA-G--------TGA---------------ATTCAGC..............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATCAGTGAGTGCAGTGACC-----------GTA..............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................A-G--------TGA---------------ATTCAGCTGATTACGG-GAC.................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GAT---CCAGTG-T-----------------------------------------GAAAAGCA........................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................A---------------ATTCAGCTGATTACGG-GACAGACA............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--AC..........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GA---------------ATTCAGCTGATTACGG-GAC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................T---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGA.......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAGACAAGC--CC-ACGGA........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

CAACA-TTGTTTGATGGCAGCCACCGAAAAAAAA---A--------C--AAGAAACAT--GTACTAAGAAATCTCGA-------------CAAAA--------------------------GTTAATTGTTTCATAATTGCGAA-G--------TGA---------------ATTCAGCTGATTACGG-GACAGACAA--------------AAACCAA-A--ACGAACC--------------------------------------------AAAGCTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACGAGC--CC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A--ACAGACGAGC--CC-ACGG.........	18	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGA-----------------------------A-------A-A--ACAGACGAGC--CC-ACGGAAATG....	29	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------A-------A-A--ACAGACGAGC--CC-ACGGAA.......	23	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------A-A--ACAGACGAGC--CC-ACGGAA.......	21	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A--ACAGACGAGC--CC-ACGGAAAT.....	22	1	1.00	1	0	1	0	0

dm3

CAACC-TCGTTTGATGGCAGCCACCGAAAAAAAA-A-A-------CC--AAGAAACAT--GTACCAAGAAATCTCGA-------------CAAAAAAAAA-AATAC-CC------ACAGCGTTTAATTGTTTCATAATTGCGGA-G--------TGA---------------ATTCAGCTGATAACGG-GACAGACAA--------------AAACGAA-A--ATGAACC--------------------------------------------AAAGTTAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----TA-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACAAGC--CC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGC--CC-ACGGAAATGGA..	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................ACAT--GTACCAAGAAATCTCGA-------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------.........................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAGTGAGTGCAGTGACC-----------G................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGC--CC-ACGGAAATGGAT.	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CGG-GACAGACAA--------------AAACGAA-A--..................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TA-----TA-TTTTATGTTCTTC--GATGCAG.........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAAGC--CC-ACGGAAATG....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGCTGATAACGG-GACAGACAA--------------A............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................A-G--------TGA---------------ATTCAGCTGATAACGG-....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCGAT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--AC..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTTTGATGGCAGCCACCGAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................ACAT--GTACCAAGAAATCTCGA-------------CAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCAGCTGATAACGG-GACAGA..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGATAACGG-GACAGACAA--------------A............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AT---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------.........................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................A-TTTTATGTTCTTC--GATGCAGGCG......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CGAT---CCAGTG-T-----------------------------------------GAAAAGCA........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GCTGATAACGG-GACAGACAA--------------AAACGA.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GA-G--------TGA---------------ATTCAGCTGATAACGG-....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................ATTCAGCTGATAACGG-GACA................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGTGAGTGCAGTGACC-----------GTACTTAGT........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGCAGGCGAT---CCAGTG-T-----------------------------------------GAA.............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AGGCGAT---CCAGTG-T-----------------------------------------GAAAAGCAG.......................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TGCGGA-G--------TGA---------------ATTCAGCTGATAACGG-G...................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................ATAC-CC------ACAGCGTTTAATT.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGAC......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A--ACAGACAAGC--CC-ACGGA........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................T---CCAGTG-T-----------------------------------------GAAAAGCAGA-----------------------------A-------A-A--ACAGACAA....................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GCTGATAACGG-GACAGACA............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACC-TCGTTTGATGGCAGCCACCGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GA---------------ATTCAGCTGATAACGG-GA..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACC-GCGTTTGATGGCAGCCACCGAATAAAAA---------------AAGAAACAC--GAATCAAGAAATCTCGA-------------A--------------------------ATCGTATAATTGTTTCATAATTGTGGC-GCAA-----ATG---------------------------ATGT-GG------------------------CCAA-G--ACGAATT--------------------------------------------TAAGTTAAT-TGCT--GGCAGTGAGTGCAGT---------------GTACTTAGTA-----T--TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTG--------AA------------------------------------GAGCAGAG-----AGCAGAAAAACAGAAGT-ACAGAT-------A-A--ACAGGCAAGC--CC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAG-----AGCAGAAAAACAGAAGT-..............................................	22	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AT---CCAGTG--------AA------------------------------------GAGCAGAG-----A...............................................................	19	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-ACAGAT-------A-A--ACAGGCAAGC--CC-A............	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A--ACAGGCAAGC--CC-ACGGA........	19	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-------A-A--ACAGGCAAGC--CC-ACGGA........	22	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AT---CCAGTG--------AA------------------------------------GAGCAGAG-----AGCA............................................................	22	1	1.00	1	0	0	0	0	1	0	0
.......CGTTTGATGGCAGCCACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GGCGAT---CCAGTG--------AA------------------------------------GAGCAGAG-----AGC.............................................................	25	1	1.00	1	0	0	0	0	0	1	0
..ACC-GCGTTTGATGGCAGCCACCGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................C--GATGCAGGCGAT---CCAGTG--------AA------------------------------------GAGC.........................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAG-----AGCAGAAAAACAGA..................................................	19	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................GCAGGCGAT---CCAGTG--------AA------------------------------------GAGC.........................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAGGCAAGC--CC-ACGGAAATG....	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................T--------------------------------------------TAAGTTAAT-TGCT--GGCAGTGAGTGCA..................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------A-A--ACAGGCAAGC--CC-ACGGA........	20	1	1.00	1	0	0	0	0	0	1	0

droYak3

CAACT-ATGTTTGATGGCAGCCACCGAAAAGAAA---A-------CA--AAGAAACAT--GAAAC-AGAAATCTCGAAATCT------------------------------GGAAATGCGTTTAATTGTTTCATAATA-----------------T--ATA------------------------------------------------------------------AT----A-ATAATAACTACAAAATAATAATAAAACCAAAACGAACTTGAGTAAAT-TGCT--ATCAGTGAGTGCAGTGACC-----------GTACTTAGTA-----T--TTTTATGTTCTTC--GATGCAGGCGATCGTCCAGTG--------AAAATCTGAAACAGAAGCTGAAAAGCGGAAAAGCTGAAAAGCGGA------------AAAACGGAAAA-ACAG-----------A--ACAGACAAGC--CC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAA-ACAG-----------A--ACAGACAA....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGCGGAAAAGCTGAAAAG..........................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTGAAAAGCGGAAAAGCTGAAA............................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGGA------------AAAACGGAAAA-ACA...........................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-ACAG-----------A--ACAGACAAGC--CC-AC...........	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAGC--CC-ACGGAAATGG...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGC--CC-ACGGAAATGGA..	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGAAAAGCGGAAAAGCTGAAAA...........................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCGGAAAAGCTGAAAAGCGGA------------AA........................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGCAGGCGATCGTCCAGTG--------AAAAT..............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCTGAAAAGCGGAAA....................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGA------------AAAACGGAAAA-ACAG-----------A--AC..........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAAGC--CC-ACGGAAATGGAT.	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAAACAGAAGCTGAAAA...........................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAAGC--CC-ACGGAAATGG...	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAGCGGAAAAGCTGAAAAGC.........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTTATGTTCTTC--GATGCAGGC.......................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAAGCGGAAAAGCTGAAAAG..........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CAACG-CCGTTTGATTGCAGCCACCGAAAGAGA-----------------AAAAACAG--ATATCAAGACATCAAGT-----AA------CAAAA--AAA--AAACCCCA--CGAACAGCGCTTAATTGTCTCATAATTGTGGAAA--------TAT---------------ATTCAGCTGATTATGA-GAGAGACAAGCCAACAGATACACAAACAGA-A--ACAA-------A----------------------------------------AACCAAATTAATT--ATCAGTGAGTGGAGTGACC-----------GTACTTAGTA-----TT-TTTTATGTTCTTC--GATTCAGGCGAT---CCAGTA-T-----------------------------------------AA-AAACAGAG-------------------AA-A-----AAAGCAG---AC-----AAAAAC--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAACG-CCGCTTGATTGCAGCCGCCGAAAAAACCGAAA--------T--AA---AAAG--CTGCCAAGACACCTCA----------------------AA--AGCCCCCA--CGAACAGGG--GAATTGTTTCATA-------------------------------------TTCGGCTGATTGTGG-GACAGGCAG--------------AAGGCAA-AAAAC----A--------------------------------------------AAAATTAAT-TATT--GTCAGTGAGTGGAGCGACC-----------GTACTTAGTA-----T--TTTTATGTTCTCC---ATGCAGGCGAC---CCGGTA-C--------------------------------------------CAGCAGA-----------------------------A---------A--ACACACAACT--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACG-ATGTTTGATTGCAGCCACCGAAAAAAGGGCAA--------G--AAAAAACAG--ATA-----------------------------------AA--ATTCCCCA--CGAACAGCGGTTAATTGTTTCATAATTGTGGAAA--------TAT---------------ATTCAGCTGATTATGC-GACAGACGT--------------AGAACAA-AAAATAAAAT--------------------------------------------AATATTAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GTACTGAGTA-----TT-TTTTATGTTCTTC--AATGCAGGCGAT---CCAGTA--------------------------------------------ATAAGCAGA-----------------------------A-------A-A--ACAGACAAAT--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAACG-ATGTTTGATTGCAGCCACCGAAAAAA-----------------------CAG--ATATCAAGA---CTCAA-------------A------AAA--AAACCCCA--AGACAAGTGGTTAATTGTTTCATAATTGTGGAAA--------CAC---------------ATTCAGCTGATTATGA-GACGAACAA--------------AAAA-------ACAA-------A----------------------------------------AAAATAAT-TATT--ATCACCGAGTGGAGTGACC-----------GTACTTAGTACTTACTT-TTTTATGTTCTTC--GATGCAGGCGAT---CCAGTA--------------------------------------------ATAAACAGA-----------------------------A-------A-A--ACAGACAAAT--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAACG-TTGTTTGATTGCAGCCACCGAAAAAA-----------------------CAG--ATACCAAG---TCTTGA-------------ATA----AAAAAACCCCCCA--AGACCAGTCGTAAAATGTTTGATAATTGTGGAAA--------GAC---------------ATTCAGCTGATTGTGA-GACGGACGT--------------AAAG-------ACA--------A----------------------------------------AAAATAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GTACTTAGTA-----TT-CTTTATGTTCTTC--GATGCAGGCGAT---CCAGTA--------------------------------------------ATAAACAGA-----------------------------A-------AAA--ACAGACAAAT--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAACC-ACATTTGATTGCAGCCGCCAAAAAAAAA-AAA--------C-----ATACAT--ATATCAAGACATCCAA---------------------AAA--AAGCCCCA--CGAACAGCGTTTAATTGTTTCATAATTGTGGAAA--------TAC---------------ATTCGTCTTATAATGA-GACGGACAA--------------AAAACAA---------------A----------------------------------------AACGAAAT-TATT--ATCAGTGAGTGGAGTGACC-----------GCACTTAGTA-----TT-TTTTATGTTCTTT--GATTCAGGCGAT---CCAGTA-A-----------------------------------------ACAAAACAGA-----------------------------G--------------AAACAAAT--TC-AAGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAACA-ATTTGTGATTGCAGCCACCGAAAAAGA--------------------GGCAG--ATACCAAGAAATTTGAG-------------G-G----AAA--AACCCCCAAGCAAACGAAGCTTGATTATTTAATAATTGTGGAAATAAATGAATAT---------------ATTCAGCTGATTATGA-A-----CA--------------------------------------------------------------------------------------------------------------------------------AATGA-----TT-TCTTATGTTCTTC--GATGCAGGCCAT---CCAGTA--------AA----------------------------------ATAAACC-----------------------------------------A--GCAGACAAAC--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAACA-AATTTTAATTGCAGCCACCGAAAAAAAG-AGA-------CC--AAGAAAAA--------------------------------------------------------------TGGTT-TTTGTTTTATAATTGTGGAAA--------TTT---------------ATTCAGCTGATTATTC-AGCGGACAA--------------AAAACAATA--ACAAACCACAAAT---------------------------------------AAATAAAT-AATT--ATCAGCGAGTGGAGTCATC-----------TTACTTAGTA-----TTTTCTTCTGTTCTTC--GATGCAGGCT-T---CAAGTG--------GAT--------------------------------TA----C----------------------------------------A-A--ACCGGAAAAG--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................AAAAAG-AGA-------CC--AAGAAAAA--------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................ATAATTGTGGAAA--------TTT---------------ATTCAGCT.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0

droBip1

CAACA-AATTTTAATTGCAGCCACCGAAAAAAATAAA----------------GCCAG--AGACCAAGAAA--------------------------------------------AAATGG-TT-TTTGTTTCATAATTGTGGAAA--------TTT---------------ATTCAGCTGATTATTC-AGCGGACAA--------------AAAACAATA--ACAAACCACAAAT---------------------------------------ACAATAAT-AATT--ATCAGACAGTGGAGTCGTC-----------TTACTCAGTA-----TTTTCTTATGTTCTTC--GATGCAGGCT-T---CGACTG--------GAT--------------------------------TGTA---------------------------------------------A--ACAGGAAAAC--TC-ACGGAAATGGATT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAACGGAAATTTGATTGCAGCAAAAATAAAACAA-ATAA-------ATAA--A--TAAATATA------------T-AATCA-------------------------------------CG--GAATAGTTCCATAATTGTGTAAGAAA-----AATATGTAA--ATGAACAATAGAATTGATAAAGAAGGCGAATAA--------------AAA--------ACAT------AAT----------------------------------------GCGTATA-TTTT--ATATGTGAGTGAGGTGCCC-----CCACAAATACTAAGTA-----TT-TTTTATGTTCTTC----TTCAGTTG---------TA-TAAAGAGAAT------------------------------------------ATTGAGATCAA-----TA------AACCA-----CC----TTAAAG----ATA-CA-CCGGAAATGGATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................TGAACAATAGAATTGATAAAGAAGGC.................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-----CC----TTAAAG----ATA-CA-CCGGAAATGGA..	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------------ATTGAGATCAA-----TA------AACCA-----CC----TT............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AATAGAATTGATAAAGAAGGC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

CAACGGAAATTTGATTGCAGCAAAAATAAAAA-----------------A--A--TAAATATA------------T-AATCA-------------------------------------CG--GAATAATTCCATAATTGTGTAAGAAA-----AATATGTAA--ATGAACAATAGAATTGATAAAGAAGGCGAATAA--------------AAA--------ACAT------AAT----------------------------------------ACGTATA-TTTT--ATATGTGAGTGAGGTGCCC------CACAAATACTAAGTA-----TT-TTTTATGTTCTTC----TTCAGTTG---------TA-TAAAGAGAAG------------------------------------------ATTGAGATCAA-----TA------AACCA-----CC----TAAAAG----ATA-CA-CCGGAAATGGATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................A-TAAAGAGAAG------------------------------------------ATTGAGAT..............................................................	19	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................................................A-TAAAGAGAAG------------------------------------------ATTGAGATC.............................................................	20	1	1.00	1	0	0	0	0	0	1

droWil2

TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGCA-----TA-TTTTACGTTTTCA--GTTGTCAAAAAT----------------AAAA------------------------------------------ACAAAACCC---------AAACA-AAAGA-----CC---ACAAAAG----ATCACAGACGGAAATGGATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG----ATCACAGACGGAAAT.....	20	1	2.00	2	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----ATCACAGACGGAAATGGA..	19	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AAAGA-----CC---ACAAAAG----ATCACAGACG..........	26	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ACAAAAG----ATCACAGACGGAAATGGA..	26	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGTCAAAAAT----------------AAAA------------------------------------------ACAAAACCC---------AAAC................................................	27	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTACGTTTTCA--GTTGTCAAAAAT----------------AA..................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA-----CC---ACAAAAG----ATCACAGA............	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CC---ACAAAAG----ATCACAGACGG.........	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GTCAAAAAT----------------AAAA------------------------------------------ACAAAACCC---------AAAC................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG----ATCACAGACGGAAATG....	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG----ATCACAGACGGAAATGGAT.	24	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAG----ATCACAGACGGAAAT.....	22	1	1.00	1	0	0	0	0	1

droVir3

CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTAGAA-----TA-CTTTACGTTTTCCTTCACGCAGATCTT---TCA----TA-----AAG------------------------------------CCCAAAATCAACAACAA-----CAACAGC-AACAA-----CA---ACAAAAGATAA----AC-GCGGAAATGGATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATAA----AC-GCGGAAATGGA..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------CCCAAAATCAACAACAA-----CAACAGC-..............................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATAA----AC-GCGGAAATGGAT.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................TA-CTTTACGTTTTCCTTCACGCAG.........................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-----CAACAGC-AACAA-----CA---AC.............................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAA-----CAACAGC-AAC...........................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-----CAACAGC-AACAA-----CA---AC.............................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATCAACAACAA-----CAACA.................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----CAACAGC-AACAA-----CA---ACAA...........................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA-----CAACAGC-AACAA-----CA---ACA............................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC-AACAA-----CA---ACAAAA.........................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAA-----CAACAGC-AA............................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAT-----AA-GTTTACGTCTTTA--TACGCAGATTAA---TCA----TA-----AAG------------------------------------ACCAAAA--------------------A-T-----AACTACGAC-A--ACAACAAAAG--AC-GCGGAAATGGATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-A--ACAACAAAAG--AC-GCGGAAAT.....	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAACAAAAG--AC-GCGGAAATGG...	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAG--AC-GCGGAAATGGA..	19	1	1.00	1	1	0	0	0	0	0

droGri2

TATTA-TTATTAGCTTGAAATAAGAGCAAAGACCCATAAAAGAAATG--AAGAAATAT--------------CTCAGA----AATGTATCAAAAA--------------------------GTTC--------------GTG--------------------ACCAAAGTCAAAACAGTTGATTCATA-GTCGCAAAA--------------AATCTAAAA--ACAT--------T----------------------------------------TCGAAAA-ATTCAATTGTGAGAGTGCTGTGAATTATTTAT----GTAATTACTTAGAT-TTTTTTTATGTTTTTA--CATGCAGA---T---TCAGTCATA-----AAG------------------------------------AACA-----------------------------------------A--ACAACAAAAG--AC-GCGGAAATGGATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_30617

3r:11091882-11092031 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.2	-14.2	-14.0