ID:

dsi_30594

 Coordinate:

2r:5824417-5824566 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.7 -11.9 -11.9 -11.7

Flybase annnotation

CDS [2r_5824567_5825025_-]; exon [2r_5824567_5825025_-]; intron [2r_5823369_5824566_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGAAGAAGCGCGGGCGAAACTACGCCATCATGAAGAACCTGAAGGACAAGGTGAGCCGAGGACTGTCCACTGGACATCAGCGATAGCCCAATGCTGTTAGCCTAACCCTCATGGTGCCAAATCCGCCCTACACCTACACCATCATCCCCCTCAGTTGCCTGGCTTGGAGGGGACCTGGGAACAGGGCTTGCATTTCCGTTTCGCCTCTCTGCGTTGACCCGCTAACCCACTGTACTCTTAAGTTACCTTA
**************************************************...((...(((.(((..((.(((......((....))))).))....))))))....))********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.........................................AAGGACAAGGCGTGACGAGGAC........................................................................................................................................................................................... 22 3 2 39.00 78 63 13 2 0 0 0 0 0 0 0
.........................................AAGGACAAGGCGTGACGAGGA............................................................................................................................................................................................ 21 3 3 8.33 25 20 4 1 0 0 0 0 0 0 0
.........................................AAGGACAAGGCGTGACGAGG............................................................................................................................................................................................. 20 3 6 6.67 40 34 6 0 0 0 0 0 0 0 0
.........................................AAGGACAAGGCGTGACGAG.............................................................................................................................................................................................. 19 3 14 4.14 58 45 9 3 0 0 0 0 0 0 1
.........................................AAGGACAAGGTGTGACGAGGA............................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGCCTGGCTTGGGGGGGA............................................................................. 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................CCCAATGCTGTTAGCCTAACCCT............................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................GTGAGCCGAGGACTGTCCACTGGACA.............................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................AAGGACAAGGCGCGACGAGGAC........................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................CATGAAGAACCTGAAGGACAAG........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................AAGGACAAGGTGAGCCGAGGA............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................TAAGGACAAGGTGTGACGAGGAC........................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................TAAAGAACATGCAGGACAAGGTG..................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TTGCCAGACTTGGAGCGGACC........................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................GAGCCGAGGACTGTA....................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0
...................................................TGAGCAGAGGACTGT........................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
........................................TAAGGACAAGGCGAGACGAG.............................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGTTAACCCGTTAACCC...................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
............................................GACAAGGCGCGACGAGGAC........................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCTTCTTCGCGCCCGCTTTGATGCGGTAGTACTTCTTGGACTTCCTGTTCCACTCGGCTCCTGACAGGTGACCTGTAGTCGCTATCGGGTTACGACAATCGGATTGGGAGTACCACGGTTTAGGCGGGATGTGGATGTGGTAGTAGGGGGAGTCAACGGACCGAACCTCCCCTGGACCCTTGTCCCGAACGTAAAGGCAAAGCGGAGAGACGCAACTGGGCGATTGGGTGACATGAGAATTCAATGGAAT
*********************************************************************************************************************************************...((...(((.(((..((.(((......((....))))).))....))))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
....................................................................................................................................................................ACCTCCCCTGGGCCC....................................................................... 15 1 3 0.67 2 2 0 0 0
.............AGCTTGGATGCTGTAGTACT......................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0
.................................................................................................................................................GGGGAAGTCAACGGTCAGAA..................................................................................... 20 3 10 0.10 1 0 0 0 1
................................................................................................AATTGGATTGGGAGT........................................................................................................................................... 15 1 10 0.10 1 0 0 1 0
....................................................................................................................................................................ACCTCCCCTGGGCCCA...................................................................... 16 2 11 0.09 1 1 0 0 0

Generated: 04/24/2015 at 12:38 AM