ID:

dsi_30582

 Coordinate:

3r:10854997-10855146 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10854346_10854996_+]; CDS [3r_10854346_10854996_+]; intron [3r_10854997_10858712_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCTCTGATCTCTTCCAGCAGTGGATGGCCGCATCGCCCACCGTGCAGCAGGTAAGCACTTAACATAGGAATTTGTCATTATATTAAGTTATGTTATTTTTAATTTAATGTTAGGGATGTAATTTTAATTAGAATAATGACCTAGAAAAGCTTAGAGCTTCCCAATTTCCTAGTGCAATGAAACTCCTGCAATGAATTTTATTCTGAGCCCATTAAAACTATTTTTGGAAAATGTGATTACGCCACTTGAG
**************************************************....(((((......(((((...((((((((.((((.......((((((((((.....)))))))))).........)))).))))))))......(((((...)))))......)))))))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
................................................................................................TGTTGATTTAATGTTCGGGATG.................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................TTGATTTAATGTTCGGGATGCA.................................................................................................................................. 22 3 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................GTTGATTTAATGTTCGGGATG.................................................................................................................................... 21 3 3 1.67 5 3 2 0 0 0 0 0
................................................................................................TGTTGATTTAATGTTCGGGAT..................................................................................................................................... 21 3 3 1.33 4 3 1 0 0 0 0 0
..................................................................................................TTGATTTAATGTTCGGGATGC................................................................................................................................... 21 3 6 1.00 6 6 0 0 0 0 0 0
...................................................................................................TGATTTAATGTTCGGGATGCA.................................................................................................................................. 21 3 3 1.00 3 3 0 0 0 0 0 0
...............................................................................................................................................................................................................CCCATTAAAACTATTTTT......................... 18 0 1 1.00 1 0 0 1 0 0 0 0
................TCAGGGGATGGCCGGATCG....................................................................................................................................................................................................................... 19 3 13 0.15 2 0 0 0 2 0 0 0
...............AGCAGTGCATGGCCG............................................................................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 0 1 0
...............................................................ATAAGAATATGTCATTATA........................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0 0
...................................................................................................TGATTTAATGTTCGGGA...................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1
...........................CCGCATCGCCCACCA................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1
.....................GGATGGACGCATCGCT..................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

GGAGACTAGAGAAGGTCGTCACCTACCGGCGTAGCGGGTGGCACGTCGTCCATTCGTGAATTGTATCCTTAAACAGTAATATAATTCAATACAATAAAAATTAAATTACAATCCCTACATTAAAATTAATCTTATTACTGGATCTTTTCGAATCTCGAAGGGTTAAAGGATCACGTTACTTTGAGGACGTTACTTAAAATAAGACTCGGGTAATTTTGATAAAAACCTTTTACACTAATGCGGTGAACTC
**************************************************....(((((......(((((...((((((((.((((.......((((((((((.....)))))))))).........)))).))))))))......(((((...)))))......)))))))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
......................................................................AAACAGTAACATAATTTATTAC.............................................................................................................................................................. 22 3 3 157.33 472 423 47 0 0 0 0 2 0 0 0 0
.......................................................................AACAGTAACATAATTTATTAC.............................................................................................................................................................. 21 3 13 21.77 283 235 47 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGTTAGAGAATC.............................................................................. 19 2 2 2.00 4 0 0 3 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGGTAGAGGATC.............................................................................. 19 2 2 2.00 4 0 0 3 0 0 1 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGTTAGAGAAT............................................................................... 18 2 3 1.33 4 0 0 2 2 0 0 0 0 0 0 0
...................................................................CCGAAACAGTAACATAATT.................................................................................................................................................................... 19 3 20 0.60 12 0 0 0 11 0 0 0 0 0 0 1
....................................................................................................................................................CGAATCTCAAAGGGTTA..................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TCGAAGGGTTAGAGAATC.............................................................................. 18 2 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGGTAGAGGAT............................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTAACGGCTCACTTTACTTTGA.................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CTCGGAGGGTTAAATGAT............................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................CCCGAAACAGTAACATAATT.................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 0 2 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGCTAGAGAATC.............................................................................. 19 3 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................AAACAGTAACATAATT.................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CTCGAAGGGGTAGAGGATCC............................................................................. 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACACTATTGCGGTGA.... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................CTCGAAGGGGTAGAGCATC.............................................................................. 19 3 19 0.11 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................GCATCTTTGCGAATCTCAA............................................................................................ 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................CTCGAAGGGCTAGAGAAT............................................................................... 18 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGATAAAAACCTTTGAGTCT.............. 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................CGAATCTCAAAGGGT....................................................................................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................CGAAACAGTAACATAATTC................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:50 AM