dsi_30579

exon [3r_11083847_11084044_-]; CDS [3r_11083847_11084044_-]; intron [3r_11084045_11091790_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCGCTTTTCACTTTAGTCCCAACACTGCTTTTAAAATCAGTTTCTGTGTAACAAAATTACAATTACATACATCTGTATGTGTAGGTATTGGGACTGTGCCTGTGTGCGTTGCGTGTTGGCCATGACATCACTACAATAAATATAATACATTAATATAACAACCAAACATCTTAATCGAATCATTCTGAAATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTTAACGA ************************************************......(((((..((((......))))..)))))(((.((((..((((..(((((..((((.(((.((.......)).)))..))))..))))).)))).........................(((........)))..)))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
.........................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGAT.......................	26	0	1	2.00	2	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGA........................	25	0	1	2.00	2	0	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................GTTTCAAGAGATCGTCCCC................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGATG......................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAAGAGATCGTCCCCTACATGG.........................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTCGCAGTTTCAAGAGATCGTCCCCGA..............................	27	2	1	1.00	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATGGAT.......................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CATGGATGACTCGGAATTCATGTTT.....	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCAAGAGATCGTCCCCGA..............................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTTCAAGAGATCGTCCCCGA..............................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTCGCAGTTTCAAGAGATCGTCCCCGACA............................	29	2	1	1.00	1	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................AGATCGTCCCCGACATGGA........................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATG..........................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAGAGATCGTCCCCGACATGGATG......................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ATGGAATCATTCTGA..............................................................	15	1	13	0.69	9	0	0	9	0	0	0	0	0	0
.............................................................................................................................................................................ATGGAATCATTCTGAAA............................................................	17	1	2	0.50	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................TGCAGTCTAAAGAGATCGACC..................................	21	3	2	0.50	1	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................GATGGAATCATTCTGAAA............................................................	18	2	11	0.18	2	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................AATGGAATCATTCTGA..............................................................	16	1	7	0.14	1	0	0	1	0	0	0	0	0	0
...................................ATCTGTCTCTGTGTAAAAAAA..................................................................................................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	0	1	0
......................................................................................ATTGGGACTGTGCTTGTT..................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	0	0	1
TCGGTTATCACTTTAGT.........................................................................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	0	0	0	1	0	0
............TAAGTCACATCACTGCTTT...........................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0

AGCGAAAAGTGAAATCAGGGTTGTGACGAAAATTTTAGTCAAAGACACATTGTTTTAATGTTAATGTATGTAGACATACACATCCATAACCCTGACACGGACACACGCAACGCACAACCGGTACTGTAGTGATGTTATTTATATTATGTAATTATATTGTTGGTTTGTAGAATTAGCTTAGTAAGACTTTAGGTAACGTCAAAGTTCTCTAGCAGGGGCTGTACCTACTGAGCCTTAAGTACAAATTGCT ************************************************......(((((..((((......))))..)))))(((.((((..((((..(((((..((((.(((.((.......)).)))..))))..))))).)))).........................(((........)))..)))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M025 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
....................................AGTCAAAGACACATTGTTTTA.................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................CCAAGTTCTCTATCAGGTGC...............................	20	3	3	0.67	2	0	2	0	0	0
..............................................................................................................................................................................ACCTTAGTAAGACATTATGTAA......................................................	22	3	4	0.25	1	0	0	1	0	0
..............................................................................................................................................................................................AGGTAACGTCAAACTT............................................	16	1	8	0.13	1	0	0	0	1	0
.................................................................................................................................................ATGTAATCATAATGTTG........................................................................................	17	2	20	0.05	1	0	0	1	0	0
...............................................................................................................................................TTATATAATCATATTGTTAGT......................................................................................	21	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:11083995-11084244 -	dsi_30579	TCGCTT-T----TCAC-------TTTAGT---C-CCAACACTGCTTTTA-AAATCAG---TTTCT----------GTGTAACAAAATTACAATTACATACATC---TGTAT-G-------------------------TGTAGGTA----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATATAA------------CAACCAAACATCTTAATCGAATC-----------------------------------A---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTTAACGA
droSec2	scaffold_0:11915523-11915772 -		TCGCTT-T----TCAC-------TTTATT---C-CCAACACTGCTTTTA-AAATCAG---TTTCT----------GTGTAACAAAATTACAATTACATACATT---TGTAT-G-------------------------TGTACGTG----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATATAA------------CAAGCAAACATCTGAATCGAATC-----------------------------------G---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA
dm3	chr3R:10124307-10124561 +		TCGCTT-T----TCAC-------TATAGTCGCC-CCAACACTGCGTTTA-AAATCAG---TTTTT----------GTGTAACAAAATTACAATTACATACATA-CATATAT-G-------------------------TGTTCGTA----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATACAA------------CAACCAAACAACTGAATCGAATC-----------------------------------A---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA
droEre2	scaffold_4770:9657146-9657395 +		TCGCTT-T----TCAC-------TTTAGTCGCC-CCAACACTGCGTTCA-AAATCAG---TGCCT----------GTGTAACAAAATTACAATTACATACATA-GGTATAT-G-------------------------TGTACATA----------------------------TA-GGCCTGT------GCCTGTGTGCGT-----TGCGAATTGGCCATGACATCACTATAAT---AAACATAATACAATAATATAC------------CAACCAACCATCTGAATTA---------------------------------------A---TTCCCAT---ATCCATTGCAGTTTCAAGAGATCGTTCCCGACATGGATGACTCGGAATTCATGTTCAACGA
droYak3	3R:16322937-16323198 -		TCGCAT-T----TCAC-------TTTAGTCGCC-CCAACACTGCGTTCA-AAATCAG---TGCCT----------GTGTAACGAAATTACAATTACATACATA-TGTACGT-G-------------------------TGTGCGTA----------------------------TAGCGCCTGTGTCTGTGCCTGTGTGCGT-----TGCCTATTGGCCATGACATCACTACAAT---AAACATAATACAATAATATAC------------CAACCAACCATCTGATGTGAATC---A-------------------------------A---TTCTCAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA
droEug1	scf7180000409584:398665-398878 -		TTGCTT-T----TTAA-------TTTAGTCGGC-CCAACACAGCCTTAA-AAATCAG---A---------------TA--------------ATACGA----T---TGTAA-A-------------------------TTTACATA----------------------------TTCAGGGTGT------GTTTGTGTGCGT-----TACATATTGACCATGACATCACTAAT--AAT---AATAATACTATATT-----------------------------------------AAAACCAACAA--------TCT-----C----------TTTGAA---ATCTATTGCAGTTTCAAGAGATTGTACCCGACATGGATGACTCGGATTTCATGTTTAACGA
droBia1	scf7180000302402:2925178-2925385 +		CG-CCT-T----TCAA-------TCCAGTCGCC-CCAACACTGCCTTAA-AAATCAG---T--CT----------GCA--------------CTACAC----GT--TCCACAT-------------------------TTTACATA----------------------------TTCCCGCTGT------GACCGTGTGCGT-----TGCGTGTTGGCCATGACATCACTAAT--AGT--------------------------------------------------------ATAAACCCAACTG--------TCT-----C-----C---TTTCCAC---ATCCATTGCAGTTTCAAGAGATCGTGCCCGACATGGACGACTCGGAATTCATGTTCAACGA
droTak1	scf7180000415380:1049362-1049571 +		TCGCTT-T----TTAA-------TTTAGTCGCC-CCAACACAGCCCTAA-AAATCAG---TGCCT----------GTA--------------ATACAC----G---TACAT-A-------------------------TTTACATA----------------------------TTCTTGCTGTGT----TTGTGTGTGCGT-----AGCGTATTGGCCATGACATCACTAAT--ATT--------------------------------------------------------GTAAATCCAACTA--------TCT-----C---------TTTTCGA---ATCCATTGCAGTTCCAAGAGATCGTGCCCGACATGGATGACTCCGAATTCATGTTCAACGA
droEle1	scf7180000491047:1025459-1025664 -		TCTCTTGTTTTTATAA-------GTCAATCGCC-GCAACAAAGACTCAA-TAATGAG---A--CT----------GTA--------------ATACAT----A---AATAC-A-------------------------TTTACATT----------------------------TTC--GTTGT------GTGTGCGTTTGT-----TACGTTTTGGCCATGACATCACTAAA--AAT--------------------------------------------------------ATAAATC-GTCAA--------TCT-----C-----------TTAAA---ATCCGTTGCAGTTTCAAGAGATCGTTCCCGACATGGATGACACGGAATTCATGTTCAACGA
droRho1	scf7180000777841:19278-19475 +		TTTCTT-TTTTTATAA-------GTCAATCGCCCCCAACAAAGACTCAA-ATATCAG---A--TT----------GTA--------------ATACAT----A---TATAT-T-------------------------TTTACATA----------------------------TT-----------------CGTGGTTGT-----TACGTTTTAGCCATGACATCACTAAT--AAT--------------------------------------------------------ATAAACCAAACCA--------TCT-----C-----------TAAAA---TTCCGTTGCAGTTTCAAGAGATTGTACCTGACATGGATGACACGGAATTCATGTTCAACGA
droFic1	scf7180000453912:612199-612386 +		TTTTTT-TTCGTATAAATCAA--ATCAGTCGCTCTCA----------------TGA--------------------------------------------------AATAG-T-------------------------TTTACATA---------------------------TTGGTTGTTGTGT----GTTGGTGTGCGT-----TACGTGTTGGCCATGACATCACTAAT--AAT--------------------------------------------------------ATAAATTCATCAA--------TCT-----C-----------TACAA---ATCCGTTACAGTTTCAAGAGATCGTACCTGACATGGATGACACGGAATTCATGTTCAACGA
droKik1	scf7180000302466:547355-547448 -		AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATATTCAAAAATTATT-----------------------------------T---TTAAAAA---TACCTTTGCAGTTTCAAGAGATCGTACCTGACATGGATGACACGGAATTTATGTTTAACGA
droAna3	scaffold_13340:21546226-21546470 -		TGGGCC-A-----TAA-------GTTAGTTAGA-CCAGCAA-GATTCATTCTGTCAGCTGT---------------TA--------------TTACGTATATG-----TATCTTTTAAAGGGGGTGGCTGTATCTACATACACAT---------------------------------------------------ATGTGT-----A----GCTGGCCATGACATCACTAGTATATTGTATCTCAAAGATTGAATG--AATTGATGTCTA-----------------------ATAAATTGCA------TCCTATGG-----G-----------TGACA---TTTCGTTGCAGTTTCAAGAGATCGTACCTGATATGGATGACACGGAATTCATGTTCAACGA
droBip1	scf7180000396413:992025-992272 +		TGGGCC-A-----TAA-------GTTAGTCGAA-CCAGAAAAGATTCATTCTGTCAGCTGT---------------TA--------------TTACGTATATG-----TATCTTGTAAAGGGGGTGGC----------TGTACGT---------------------------------------------GTGTGTGTTTGTTGGCTGACGTGCTGGCCATGACATCACTGAATT---GTATCTCGAAGATTAAATA--AACTGTTGTCTA-----------------------ATAAAGTCCA------CCCTGTTG-----C-----------TTGCA---TTTCATTGCAGTTTCAAGAGATCGTACCTGATATGGATGACACGGAATTCATGTTCAACGA
dp5	2:12980772-12980965 +		TGGCAC-T----CCAAATCACATACTAGTCGAT--------------------------------------------------------------------------GTAA-G-------------------------AGTGTGTG----------------------------TG-GGGGTGT------GG-GATGGGTGT-----TACGTTGTGGCCATGACATCACA---------------------------------------------------TCAGAATCGAAA-ATAAATGCAACTTT--------CTAAACCCCGTTATGCC-TATGTC---TATTCTTGCAGTTTCAAGAGATCGTGCCCGATATGGATGACACGGAATTCATGTTCAACGA
droPer2	scaffold_0:7475461-7475670 -		TGGCAC-T----CCAAATCACATACTAGTCGAT--------------------------------------------------------------------------GTACATAGCAGTGTGTGTGGG----------TGTGTG-G----------------------------TAGGGGGTGT------GG-GATGGGTGT-----TACGTTGTGGCCATGACATCACA---------------------------------------------------TCAGAATCGAAA-ATAAATGCAACTTT--------CTAAACCCCGTTATGCC-TTTGTC---TATTCTTGCAGTTTCAAGAGATCGTGCCAGATATGGATGACACGGAATTCATGTTCAACGA
droWil2	scf2_1100000004902:3324738-3324856 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTGACATCACAACC--TGC---TACATATCTAC------------------------ATA-----------TAT-ACAAATATAACTTA--------TATATCTCC--------------A---A---TTTGCAGTTTCAAGAGATCGTGCCTGATATGGATGATAGTGAATTCATGTTTAACGA
droVir3	scaffold_12822:913203-913259 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGTTTCAAGAGATCGTGCCTGATATGGATGACACCGAATTCATGTTCAACGA
droMoj3	scaffold_6540:33574680-33574735 +		T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTTTCAAGAGATCGTGCCTGATATGGATGACAGCGAATTCATGTTCAACGA
droGri2	scaffold_15074:2883050-2883312 -		TGAAAT-T----TG--------------------CC-------------------AG---TGCCGCTGATTATATTTATAGCAACATT-----TCTATACATA---CGCAC-A-------CG----------------TACTTGTGTCTTATATGTATTTTGGTAATCTATTTTTTGTTTTTGTGTT---TTATTTGTTCGT-----TTTGTTGTGTCTATGATA--------------AAGAAAAGAAA---------------------AAACGAAAAAGGAGAGACAA---ATATTTGACACTTTCACCAT-TTT-----T-----A-----TTTCGATCCACAATTGCAGTTTCAAGAGATCGTGCCTGATATGGATGATTCGGAATTCATGTTCAACGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCGCTT-T----TCAC-------TTTAGT---C-CCAACACTGCTTTTA-AAATCAG---TTTCT----------GTGTAACAAAATTACAATTACATACATC---TGTAT-G-------------------------TGTAGGTA----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATATAA------------CAACCAAACATCTTAATCGAATC-----------------------------------A---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTTAACGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGAT.......................	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGA........................	25	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTCCCC................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGATG......................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATGGAT.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CATGGATGACTCGGAATTCATGTTT.....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGA..............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTCAAGAGATCGTCCCCGA..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGATCGTCCCCGACATGGA........................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATG..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTCCCCGACATGGATG......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCGCTT-T----TCAC-------TTTATT---C-CCAACACTGCTTTTA-AAATCAG---TTTCT----------GTGTAACAAAATTACAATTACATACATT---TGTAT-G-------------------------TGTACGTG----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATATAA------------CAAGCAAACATCTGAATCGAATC-----------------------------------G---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGG.........................	24	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCCCCGACATGGATGACTCGGA...............	23	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTCCCCGACATG..........................	20	1	1.00	1	0	1	0	0
................................................................................................................................................TG----------------------------TTGGGACTGT------GCCTGTGTG.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATGGAT.......................	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................ATGACTCGGAATTCATGTTCAACG.	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGAT.......................	26	1	1.00	1	0	1	0	0

dm3

TCGCTT-T----TCAC-------TATAGTCGCC-CCAACACTGCGTTTA-AAATCAG---TTTTT----------GTGTAACAAAATTACAATTACATACATA-CATATAT-G-------------------------TGTTCGTA----------------------------TTGGGACTGT------GCCTGTGTGCGT-----TGCGTGTTGGCCATGACATCACTACAAT---AAATATAATACATTAATACAA------------CAACCAAACAACTGAATCGAATC-----------------------------------A---TTCTGAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................T------GCCTGTGTGCGT-----TGCGTGTTGGCCA........................................................................................................................................................................................	26	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13
.......................................ACTGCGTTTA-AAATCAG---TTTTT----------GTGT.....................................................................................................................................................................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATGGAT.......................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTCCCCGA..............................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTT......	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCCCCGACATGGATGACTCGGAATTCAT.........	29	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACA............................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATGGAT.......................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................GTGTGCGT-----TGCGTGTTGG...........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CATGGATGACTCGGAATTCATG........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GGATGACTCGGAATTCATGT.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AGTTTCAAGAGATCGTCCCCGAC.............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATGACTCGGAATTCATGTTCA....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTCCCCGACATG..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTCCCCGACATGGAT.......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ATGACTCGGAATTCATGT.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCGCTT-T----TCAC-------TTTAGTCGCC-CCAACACTGCGTTCA-AAATCAG---TGCCT----------GTGTAACAAAATTACAATTACATACATA-GGTATAT-G-------------------------TGTACATA----------------------------TA-GGCCTGT------GCCTGTGTGCGT-----TGCGAATTGGCCATGACATCACTATAAT---AAACATAATACAATAATATAC------------CAACCAACCATCTGAATTA---------------------------------------A---TTCCCAT---ATCCATTGCAGTTTCAAGAGATCGTTCCCGACATGGATGACTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTT......	20	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTTCA....	22	1	2.00	2	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTTCCCGACATGGAT.......................	24	1	2.00	2	0	0	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTTCCCGACATG..........................	25	1	2.00	2	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTTCCCGACATGGATGACT...................	27	1	2.00	2	0	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTTCCCGACATGGAT.......................	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGT.......	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................AGTTTCAAGAGATCGTTCCCGACATGGAT.......................	29	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTTCCCGACATG..........................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTTCCCGACATGGATG......................	24	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CGACATGGATGACTCGGAATT............	21	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTTCCCGACATGGAT.......................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTTCCCGACATGGATGACTCGGA...............	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTTC.....	21	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AGATCGTTCCCGACATGGATGACTCGGA...............	28	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTTCAACGA	26	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GACATGGATGACTCGGAATTCAT.........	23	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................TGACTCGGAATTCATGTTC.....	19	1	1.00	1	0	0	0	1	0	0	0

droYak3

TCGCAT-T----TCAC-------TTTAGTCGCC-CCAACACTGCGTTCA-AAATCAG---TGCCT----------GTGTAACGAAATTACAATTACATACATA-TGTACGT-G-------------------------TGTGCGTA----------------------------TAGCGCCTGTGTCTGTGCCTGTGTGCGT-----TGCCTATTGGCCATGACATCACTACAAT---AAACATAATACAATAATATAC------------CAACCAACCATCTGATGTGAATC---A-------------------------------A---TTCTCAA---ATCCATTGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................GCAGTTTCAAGAGATCGTCCCCGACAT...........................	27	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12
..................................................................................................................................................................................................GTGTGCGT-----TGCCTATTGGCCATGAC....................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGT.......	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTCCCCGACATG..........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GATGACTCGGAATTCATGTT......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTCCCCGACATGGAT.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....AT-T----TCAC-------TTTAGTCGCC-CCAACACTGCGTT.....................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GACATGGATGACTCGGAATTCAT.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTCCCCGACATGGA........................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ACTCGGAATTCATGTTCAA...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCCCCGACATGGATGACTCGGA...............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTCCCCGACATGGAT.......................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTCCCCGA..............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTCCCCGACATGGATGACT...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGAGATCGTCCCCGACATGGAT.......................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTCCCCGACATGGA........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTCAAGAGATCGTCCCCGACAT...........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TTGCTT-T----TTAA-------TTTAGTCGGC-CCAACACAGCCTTAA-AAATCAG---A---------------TA--------------ATACGA----T---TGTAA-A-------------------------TTTACATA----------------------------TTCAGGGTGT------GTTTGTGTGCGT-----TACATATTGACCATGACATCACTAAT--AAT---AATAATACTATATT-----------------------------------------AAAACCAACAA--------TCT-----C----------TTTGAA---ATCTATTGCAGTTTCAAGAGATTGTACCCGACATGGATGACTCGGATTTCATGTTTAACGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG-CCT-T----TCAA-------TCCAGTCGCC-CCAACACTGCCTTAA-AAATCAG---T--CT----------GCA--------------CTACAC----GT--TCCACAT-------------------------TTTACATA----------------------------TTCCCGCTGT------GACCGTGTGCGT-----TGCGTGTTGGCCATGACATCACTAAT--AGT--------------------------------------------------------ATAAACCCAACTG--------TCT-----C-----C---TTTCCAC---ATCCATTGCAGTTTCAAGAGATCGTGCCCGACATGGACGACTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGCTT-T----TTAA-------TTTAGTCGCC-CCAACACAGCCCTAA-AAATCAG---TGCCT----------GTA--------------ATACAC----G---TACAT-A-------------------------TTTACATA----------------------------TTCTTGCTGTGT----TTGTGTGTGCGT-----AGCGTATTGGCCATGACATCACTAAT--ATT--------------------------------------------------------GTAAATCCAACTA--------TCT-----C---------TTTTCGA---ATCCATTGCAGTTCCAAGAGATCGTGCCCGACATGGATGACTCCGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTCTTGTTTTTATAA-------GTCAATCGCC-GCAACAAAGACTCAA-TAATGAG---A--CT----------GTA--------------ATACAT----A---AATAC-A-------------------------TTTACATT----------------------------TTC--GTTGT------GTGTGCGTTTGT-----TACGTTTTGGCCATGACATCACTAAA--AAT--------------------------------------------------------ATAAATC-GTCAA--------TCT-----C-----------TTAAA---ATCCGTTGCAGTTTCAAGAGATCGTTCCCGACATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTCTT-TTTTTATAA-------GTCAATCGCCCCCAACAAAGACTCAA-ATATCAG---A--TT----------GTA--------------ATACAT----A---TATAT-T-------------------------TTTACATA----------------------------TT-----------------CGTGGTTGT-----TACGTTTTAGCCATGACATCACTAAT--AAT--------------------------------------------------------ATAAACCAAACCA--------TCT-----C-----------TAAAA---TTCCGTTGCAGTTTCAAGAGATTGTACCTGACATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTTT-TTCGTATAAATCAA--ATCAGTCGCTCTCA----------------TGA--------------------------------------------------AATAG-T-------------------------TTTACATA---------------------------TTGGTTGTTGTGT----GTTGGTGTGCGT-----TACGTGTTGGCCATGACATCACTAAT--AAT--------------------------------------------------------ATAAATTCATCAA--------TCT-----C-----------TACAA---ATCCGTTACAGTTTCAAGAGATCGTACCTGACATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACAAATATTCAAAAATTATT-----------------------------------T---TTAAAAA---TACCTTTGCAGTTTCAAGAGATCGTACCTGACATGGATGACACGGAATTTATGTTTAACGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGGGCC-A-----TAA-------GTTAGTTAGA-CCAGCAA-GATTCATTCTGTCAGCTGT---------------TA--------------TTACGTATATG-----TATCTTTTAAAGGGGGTGGCTGTATCTACATACACAT---------------------------------------------------ATGTGT-----A----GCTGGCCATGACATCACTAGTATATTGTATCTCAAAGATTGAATG--AATTGATGTCTA-----------------------ATAAATTGCA------TCCTATGG-----G-----------TGACA---TTTCGTTGCAGTTTCAAGAGATCGTACCTGATATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTACCTGATATGGAT.......................	26	1	3.00	3	0	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTACCTGATATGGAT.......................	19	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTACCTGATATGGAT.......................	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................GTACCTGATATGGATGACACGG................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTACCTGATATGGATGACACGGA...............	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................TTTCAAGAGATCGTACCTGATATGGAT.......................	27	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTACCT................................	19	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTACCTGATATGGATG......................	25	1	1.00	1	1	0	0	0	0	0

droBip1

TGGGCC-A-----TAA-------GTTAGTCGAA-CCAGAAAAGATTCATTCTGTCAGCTGT---------------TA--------------TTACGTATATG-----TATCTTGTAAAGGGGGTGGC----------TGTACGT---------------------------------------------GTGTGTGTTTGTTGGCTGACGTGCTGGCCATGACATCACTGAATT---GTATCTCGAAGATTAAATA--AACTGTTGTCTA-----------------------ATAAAGTCCA------CCCTGTTG-----C-----------TTGCA---TTTCATTGCAGTTTCAAGAGATCGTACCTGATATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGGCAC-T----CCAAATCACATACTAGTCGAT--------------------------------------------------------------------------GTAA-G-------------------------AGTGTGTG----------------------------TG-GGGGTGT------GG-GATGGGTGT-----TACGTTGTGGCCATGACATCACA---------------------------------------------------TCAGAATCGAAA-ATAAATGCAACTTT--------CTAAACCCCGTTATGCC-TATGTC---TATTCTTGCAGTTTCAAGAGATCGTGCCCGATATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................ACTAGTCGAT--------------------------------------------------------------------------GTAA-G-------------------------AGT.......................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................GCCCGATATGGATGACACGGAAT.............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGGGTGT-----TACGTTGTGGC..........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TG----------------------------TG-GGGGTGT------GG-GATGGG.............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................GATATGGATGACACGGAATT............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATGACACGGAATTCAT.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCCGATATGGATGACA...................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................GCCCGATATGGATGACACGGA...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCCGATATGGAT.......................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCCGATATGGAT.......................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCCGATATGGAT.......................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCCGATATG..........................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGGCAC-T----CCAAATCACATACTAGTCGAT--------------------------------------------------------------------------GTACATAGCAGTGTGTGTGGG----------TGTGTG-G----------------------------TAGGGGGTGT------GG-GATGGGTGT-----TACGTTGTGGCCATGACATCACA---------------------------------------------------TCAGAATCGAAA-ATAAATGCAACTTT--------CTAAACCCCGTTATGCC-TTTGTC---TATTCTTGCAGTTTCAAGAGATCGTGCCAGATATGGATGACACGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCAGATATGGATGA.....................	26	1	4.00	4	4	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCAGATATGGAT.......................	26	1	2.00	2	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCAGATATGGA........................	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCAGATATGGAT.......................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCAGATATGGAT.......................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................AGTGTGTGTGGG----------TGTGTA-...................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1

droWil2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTGACATCACAACC--TGC---TACATATCTAC------------------------ATA-----------TAT-ACAAATATAACTTA--------TATATCTCC--------------A---A---TTTGCAGTTTCAAGAGATCGTGCCTGATATGGATGATAGTGAATTCATGTTTAACGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCTGATATGGAT.......................	24	1	9.00	9	0	0	8	1	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATGGAT.......................	23	1	7.00	7	0	0	6	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCTGATATG..........................	21	1	4.00	4	0	0	3	1	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATGGATG......................	24	1	3.00	3	0	0	3	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GTGCCTGATATGGATGATAGT.................	21	1	2.00	2	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGATGATAGT.................	25	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCTGATAT...........................	24	1	2.00	2	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATG..........................	20	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGAGATCGTGCCTGATATGGAT.......................	22	1	2.00	2	0	0	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATGGATGAT....................	26	1	2.00	2	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCTGATATGGATGAT....................	27	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CTGATATGGATGATAGTGAATTCAT.........	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGCCTGATATGGATGATAGTGA...............	24	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCT................................	19	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCTGATATGGAT.......................	26	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................GCCTGATATGGATGATAGTGA...............	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATGGATGATA...................	27	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCTGATATGGAT.......................	28	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATATGGATGATAGTGAATTCAT.........	23	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCTGATATGGA........................	23	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTGCCTGATATG..........................	22	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................TGCCTGATATGGATGATAGTGA...............	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTGCCTGATATGGAT.......................	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................ATGGATGATAGTGAATTC...........	18	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGATGATAGTGA...............	27	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGCCTGATATGGATGATAGT.................	22	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGATG......................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAGATCGTGCCTGATATGG.........................	26	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGATCGTGCCTGATATGGATGATAGT.................	29	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCTGATAT...........................	22	1	1.00	1	0	0	1	0	0

droVir3

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGTTTCAAGAGATCGTGCCTGATATGGATGACACCGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCTGATATGGAT.......................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGAGATCGTGCCTGATATGGAT.......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGATGACA...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGAT.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TCAAGAGATCGTGCCTGATATG..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGA........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGTGCCTGATATGGATGACACCGA...............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGGATGACACCGAATTCATGTTCAACG.	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GAGATCGTGCCTGATATGGATGACACC.................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGTTTCAAGAGATCGTGCCTGATATGGATGACAGCGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................GATCGTGCCTGATATGGATGACAGCGA...............	27	1	2.00	2	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................TTCAAGAGATCGTGCCTGA..............................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATATGGATGACAGCGAATTCAT.........	23	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................TGATATGGATGACAGCGAATTCAT.........	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................GATATGGATGACAGCGAAT.............	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAGATCGTGCCTGATATG..........................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TATGGATGACAGCGAATTCATGTTCAAC..	28	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................GCCTGATATGGATGACAGCGAATTCAT.........	27	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................GATATGGATGACAGCGAATT............	20	1	1.00	1	0	0	0	0	0	1

droGri2

TGAAAT-T----TG--------------------CC-------------------AG---TGCCGCTGATTATATTTATAGCAACATT-----TCTATACATA---CGCAC-A-------CG----------------TACTTGTGTCTTATATGTATTTTGGTAATCTATTTTTTGTTTTTGTGTT---TTATTTGTTCGT-----TTTGTTGTGTCTATGATA--------------AAGAAAAGAAA---------------------AAACGAAAAAGGAGAGACAA---ATATTTGACACTTTCACCAT-TTT-----T-----A-----TTTCGATCCACAATTGCAGTTTCAAGAGATCGTGCCTGATATGGATGATTCGGAATTCATGTTCAACGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................CCTGATATGGATGATTCG.................	18	1	1.00	1	1	0

dsi_30579

3r:11084045-11084194 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads