ID:

dsi_30574

 Coordinate:

2r:5823369-5823518 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.8 -18.6 -18.4

Flybase annnotation

intron [2r_5823223_5823335_-]; CDS [2r_5823336_5823368_-]; exon [2r_5823336_5823368_-]; intron [2r_5823369_5824566_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################################-----------------
GTGTAGTTAGTCGTAGCTTAAATAACCCATTGGTTGTTCTGCGCATCTCATTCACGCCGTATCTCGCCCGTATCTTGTGTGTCTCTCTTTCATATGCCGCTTGGATCGCTCATCCTACACTGTTCTGTGCTTTCTGCTCTCGCTGCGGTTGTGACCAATCGTTTTCTGATCCAAAAAACGCGTCTGTCTAACCATTGCAGACTAATCCGGCTGTAAAGTCTGCCGTCAAATCGGTGAGTGGTCCAGTCCC
*******************************************************************************************..((((...((((((((.........(((......)))......((....)).(((((((....)))))))....)))))))).....))))................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................AACGCGTCTGTCTAACCATTGCA................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AAAGTCTGCCGTCAAATCG................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................ATATGCCGCTTGGATCGC............................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GATCCAAAAAACGCGTCTGT............................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................CTCATCCTACACTGTTCTG........................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................CATCCTACACTGTTCTGTGCTTTCTGCT................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCACTAATCCGGCTGTAAAGTCTGCCGT........................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTGCCGAGAAATCGGTGAGGG.......... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................ACCAAGCTTTGTCTGATCCAA............................................................................ 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................AAGTCCGCCGTCAAA.................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.....................ATAACAGATTCGTTGTTCTG................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0
............................ATTCGTTGTTCTGCG............................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................CTGCGGTTGTCACCA............................................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................CCAGATAACGCGTCTGACT............................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CACATCAATCAGCATCGAATTTATTGGGTAACCAACAAGACGCGTAGAGTAAGTGCGGCATAGAGCGGGCATAGAACACACAGAGAGAAAGTATACGGCGAACCTAGCGAGTAGGATGTGACAAGACACGAAAGACGAGAGCGACGCCAACACTGGTTAGCAAAAGACTAGGTTTTTTGCGCAGACAGATTGGTAACGTCTGATTAGGCCGACATTTCAGACGGCAGTTTAGCCACTCACCAGGTCAGGG
***************************************************..((((...((((((((.........(((......)))......((....)).(((((((....)))))))....)))))))).....))))................******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........................................................AGAGAGCGGGCATAG................................................................................................................................................................................ 15 1 7 0.29 2 2 0 0 0 0
.......................................................CGGTATGGAGGGGGCATAG................................................................................................................................................................................ 19 3 13 0.08 1 0 1 0 0 0
..................................................................................................................GATGTAAGAAGAAACGAAAG.................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................AGGTAACGTCTGATT............................................. 15 1 20 0.05 1 0 0 0 1 0
..........................................................................................................TCGAGTAGGATGTGGC................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................ACAGAGTGCTGACGTCTGA............................................... 19 3 20 0.05 1 0 0 0 0 1
.......................................................................................................................................................................................................................CTCAGACGGCAGTGAAGC................. 18 3 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 12:37 AM