dsi_30567

exon [x_10707538_10707696_+]; CDS [x_10707538_10707696_+]; intron [x_10707697_10715704_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGCAGAATCCGCAGCAGCAGGGATCCAAATCCAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTTAATGATATGCGCCAACAGCCTCAGCTGAAAATTAGCCACAGATACAGATACAGTCACTCACACAGACATACCCAAACGCACACCAGCGCAAGCGAGTCCTCGTGAGCCTCCATCCACATCAGCACCAACATCCACATCAACATCAAAGCCAAATTCAACACCAATACCATTACCAACTTCGCC *************************************************************************************....................(((.............(((((...(((.........(((......))).......)))...))))).....)))....***************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	O002 Head	SRR553486 Makindu_3 day-old ovaries	M023 head
.............................................................................................................................................................AGCGAGTCCTCGTGAGCCTCCATCCACA.................................................................	28	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................CATCCACATCAACATCAA.....................................	18	0	2	1.00	2	0	0	0	2	0	0
.......................................................................................TCAGCTGAAAATTAGCCACAGATACAGA.......................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0
........................................GTCCCTGACTGTAAGTT.................................................................................................................................................................................................	17	1	2	0.50	1	0	1	0	0	0	0
.........................................TCCCTGACTGTAAGTTACCG.............................................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................CTCGTGAGCCTTGATCC....................................................................	17	2	8	0.25	2	0	0	0	0	2	0
.................CAGGGATCCAATTCAAGGAC.....................................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	0	1
...................................................................................................................................................................TACTCGTGAGCCCCCA.......................................................................	16	2	12	0.08	1	1	0	0	0	0	0
........................................GTGCCTGACTGTAAGTT.................................................................................................................................................................................................	17	2	14	0.07	1	0	1	0	0	0	0

TCGTCTTAGGCGTCGTCGTCCCTAGGTTTAGGTCCTCGCCCAGGGTCTGACATTCAAGGACGTTAAATTACTATACGCGGTTGTCGGAGTCGACTTTTAATCGGTGTCTATGTCTATGTCAGTGAGTGTGTCTGTATGGGTTTGCGTGTGGTCGCGTTCGCTCAGGAGCACTCGGAGGTAGGTGTAGTCGTGGTTGTAGGTGTAGTTGTAGTTTCGGTTTAAGTTGTGGTTATGGTAATGGTTGAAGCGG ***************************************************************....................(((.............(((((...(((.........(((......))).......)))...))))).....)))....*************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	M025 embryo	M053 female body
.................................................................................................................................................................................................................ATTTTCGGTGTAAGTTGTGG.....................	20	2	2	1.00	2	0	0	2	0	0	0	0	0
.....................................................................ACTATAAGCGGTTGCAGGAGTCG..............................................................................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0	0	0
......................................CCCACTGTCTGACATTC...................................................................................................................................................................................................	17	2	4	0.50	2	0	0	0	2	0	0	0	0
...................................................................................................ATCGGTGTCTATGTCA.......................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................ATGTTGTCGTGGTTGTAGGTGAA..............................................	23	3	4	0.25	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................TTGTTGTAGGAGTAGTCGTAGTTT....................................	24	3	4	0.25	1	1	0	0	0	0	0	0	0
.........................................................................................................................GGGAGTGTGTCTGTA..................................................................................................................	15	1	19	0.21	4	4	0	0	0	0	0	0	0
......................................................................................................................................................................AGCTGTCGGAGGTAGG....................................................................	16	2	20	0.15	3	3	0	0	0	0	0	0	0
.......................................CCACTGTCTGACATTC...................................................................................................................................................................................................	16	2	19	0.11	2	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................TGGTATTAGGTGTAGTTG..........................................	18	2	10	0.10	1	0	0	0	0	0	1	0	0
...............................................................................................................................................ACGTGTGGTCGCGTTC...........................................................................................	16	1	10	0.10	1	0	0	0	0	1	0	0	0
............................................................................................................TATGTCGATGTCAGT...............................................................................................................................	15	1	13	0.08	1	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................AGTTGTAGTATCGGT................................	15	1	17	0.06	1	1	0	0	0	0	0	0	0
.............................................................................................CTATTAATCGGAGGCTAT...........................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0
...............................................................................................................................................GCGTGTGGTCGCGTTT...........................................................................................	16	1	20	0.05	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................TGTAGTAGCGGTTGTAGG..................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................TGGTTGTAGGTGTAGTGT..........................................	18	2	20	0.05	1	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:10707647-10707896 +	dsi_30567	AG------CAGAATCCGCAG------------------------------------------------C---AGCAGGGATCCAAAT------CCAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCCTCAGCTG------------------AAAAT---T---------------A------------------GCCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAGCA------CCAACATCCA------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAT-------------------------------------ACCATT-ACCAACTTCGCC
droSec2	scaffold_36:5245-5494 +		AG------CAGAATCCGCAG------------------------------------------------C---AGCAGGGATCCAAAT------CCAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCCTCAGCTG------------------AAAAT---T---------------A------------------GCCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAGCA------CCAACATCCA------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC
dm3	chrX:11281914-11282154 +		AG------CAGAATCCGCAGCAG---------------------------------------------C---AGCAGGGATCCAAAT------CGAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCTTCAGTTG------------------AAAAT---C---------------A------------------GTCACAGATACAGAT------ACAGTCACTTACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAA------------------------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC
droEre2	scaffold_4690:3872603-3872873 -		AG------CAGAATTCGCAGCAGCCG------CAGCC---GCAGCA---GCA---------------GC---AGCAGGGATCCAAAT------CTAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--CATATGCTCCAACAGCCTCAGCTG------------------AAAAT---C---CCT---GCCAGCA------------------ATCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAA------------------------------------------CATCAAAGCCAACATCA------------------------ACACCAACAACAACACC----------------------------------------------AACATT-ACCAACTTCGCC
droYak3	X:10871177-10871438 -		AG------CAGAATCCGCAGCAGCCG------CA---------------------------------GC---AGCAGGGATCCAAAT------CAAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--CATATGCGCCAACAGCCTTAGCTG------------------AAAAT---C---CCT---GCCAGCA------------------ATCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACCCCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCCACA------TCAA------------------------CATCCACATCAAA------------------------------------------GCCAACACCAACAACAAC-------------------------------------ACCATT-ACCAACTTCGCC
droEug1	scf7180000408176:446882-447212 +		AG------CAAAATCAGCAGCAGCCG------CAACA---GCAGCA---GCAGCA---G---TT---GC---AGCAGGGAACCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATAT-AAT--CATTTGCGCCAATGGTCTCAGTTA------------------AAAAT---C---CAT---GTAAAAAAACAAAAAACAAATCACATATACAGATACAGAT------ACAGTCGCACACACAGATACACCA--GC---------------------ACGCACACCAACGCAAGC-----GAATCCTCGTAAGCCTCCATCAGCATCCACATACACATCAATAACAAC---AACAA---------CATCAACAACAACATCATCAACAACTACATCAACATCAAA------------------------------------------GCC------------AAC-------------------------------------ACCATT-ACCAACTTTGCC
droBia1	scf7180000301760:357700-357940 +		AG------CAGCAACAGCAG------------------------------------------------T---CGCTGGCAGCCAAGT------CGAGGAGCGGGTCGCAGACTGTAAGTTTTGGCAATTT-AAT--CATTTGTGCCAACGGCCCCAGCTG------------------AAAAC---C---CAT---GCCAGAA------------------ATCACAGACTCAGAC------ACAGTCACCCACACAGATACACCA--GC---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCAAC---------------------------ATCAAAA------------------------------------CCAACATCAAA------------------------------------------GCCAACTGC------AAC-------------------------------------ACCATT-ACCAACTTCGCC
droTak1	scf7180000415843:232049-232376 +		AG---------AATCCGCAACAGCAG------CAGCCGCAACAGCA---ACAGCAGCCGCAACA---GC---AGCTGGGATCCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCCTTAGCTG------------------AAAAT---C---CAT---GCCAAAA------------------ATCACAGATTCAGAT------ACAGTCACTCACACAGATA-----------------------------------CACCAGCGCAAGC-----GAATCCTCGTAAGCCTCCATCAAC---------------------------ACCAAAATCAGAATCAAAATCAA------------------AATCAAAATCAGA------------------ACCAAGCTCAACATCAAAGCCAAAACCAAAACCATAACGAAAAC---CCAAAG---CGAA-------------ACCAACACCATT-ACCAACTTCGCC
droEle1	scf7180000491193:449286-449559 -		AGCTGCAGCAGAATCCGCAGCAGCCG------CAACA---GCAGCA---GCAACA---G---TT---GC---AGCAGGGATCCAAGT------CCAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTTTAGCTG------------------AAAAC---C---CGT---AGCAGAA------------------ATCACAAATACAGAT------ACAGTCACACACACAGATACACCA--AC---------------------ACGCACACCAACGCAAGC-----GAGTCCTCGTAAGCCTCCATCAAC---------------------------AT------------------------------------------CAACATCAAA------------------------------------------GCCAACATCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC
droRho1	scf7180000779986:276223-276526 +		AGCTGCAGCAGAATCCGCAGCAGCAG------CAGC---------------AGCA---A---TC---GCAGTCGCAGGGATCCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTTTAGCTA------------------AAAAC---C---CAT---AGCAGAA------------------ATCACAGATACAGAT------AGAGTCACTCACACAGATACACCA--AC---------------ACCAACACGCACAGCAACGCAAGC-----GAATCCTCGTAAGCCTCCATCAAC---------------------------ATCAAAA------TCAA------------------------------CATCAAAGCCAACATCAACACCAACACCAAT------------------ACCAACATCAATACCAAC-------------------------------------ACCATT-ACCAACTTCGCC
droFic1	scf7180000453872:82984-83265 +		AGTTGCAGCAGAATCCGCAGCAGGCG------CAACA------------------------------GC---AGCAGGGATCCAAGT------CGCGGAGCGGGTCGCAGACCGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTCTAGCTGATGCC-------------AAAAT---C---CAT---GGCAGAA------------------GTCACAGATACAGAC------ACAGTCACTCACACAGATAC--CCAAGC---------------------ACACACACCAGCGCAAGC-----GAGTCCTCGTAAGCCTCCATCAAC---------------------------ATCAACA------TCAACATGAA------------------------CATCAAAGCCAAC------------------------------------GCCAACACCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC
droKik1	scf7180000302798:244284-244553 +		AG------CAGCAGCAGCAATCGCAA------CAGCA---GC---------AGAC---A---TC---GC---AGCAAGGATCCAAGT------CTAGGAGCGGGTCGCAGACTGTAAGTCGCTGCAATTT-AAT--CATTTGTGCCAATGGCCTTAGCTG------------------AAA-T---C---CAT---CCCAGAT------------------ATCACAGATACAGAC------ACAGACACAAAAACAGATACAAAT--AC---------------------AGATACCGCAGAGTCATC-----GCATCCTTGTCAGCCTCCATCGAC---------------------------ATCAGAA------TCAA------------------------------AATCAGA------ATCA------------------------AC------ACCA---TTACCACCAGC-------------------------------------ACCAGC-GCCAACACCTTA
droAna3	scaffold_13047:1194745-1194904 -		AG------CAGAGCCAGCAACCCCTGACCCCAGCCCA------------------------------GG---CGGCGGGCTCGAAGC------CGCGGAGTGGGTCGCAGACCGTAAGTCGCTGCAATTT-AAT--TATTTGTGCCAATGGCCGCATCTG------------------AAAAGAGTC---------------------------------------CTCCAAAGAT------ACAACTCCCCACAAGGACATTCCA--AG---------------------CCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396575:211449-211602 +		AG------CAGAACCAGCAACCTTTGACCCCATCCCA------------------------------GT---CGCAGGGTTCGAAGC------CGCGGAGTGGGTCGCAGACCGTAAGTCGCTGCAATTT-AAT--TATTTGTGCCAATGGCTCCGGCTG------------------AAAAGAATC---CTT------------------------------CAAAGA------C------ACCAAACCACACAAGGACACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group1e:6080033-6080332 -		AG------CAGCAGATACCGCAG---------------------------------------------------TCACAATCCACGACATCGGCCAGGAGCGGGTCCCAGACCGTAAGTCGATGCAATTTTAATGCCACTTATGCCATTC-------------CCAAAGACTATGCTGCAACT---AACACCTGGACACAACA------------------CACACAGATACAGAT------ACA------------GACATACCA--CAACCCACAATGC-ATCATCCACATGCA----------------------------CAGTCTTCATCAAC---------------------------ACCAACG-------CACCAACAA------------------------CATCAAC------------------------------------ACCAACACCAACACCAACACGAAACGCAGCCACAGCAGCGACAGTGCTTTGTTGCAGCAGCAGCAGC-AGCAGCAGCGCC
droPer2	scaffold_21:1045338-1045606 -		AG------CAGCAGCAGCAGTTACCG------------------------------------------C---AGTCACAATCCACGACATCGGCCAGAAGCGGGTCCCAGACCGTAAGTCGATGCAATTTTAATGCCACTTATGCCATTC-------------CCAAAGACTATGCTGCAACT---AACACCTGGACACAACA------------------CACACAGATACAGAT------ACA------------GACATACCA--CAACCCACAATGC-ATCATCCACATGCA----------------------------CAGTCTTCATCAAC---------------------------ACCAACG-------CACCAACAA------------------CATCAACATCAAC------------------------------------------ACCAACACCAACACGAAA-------------------------------------CGCAGC-CACAGCAGCGAC
droWil2	scf2_1100000004902:5909092-5909339 +		AG------CAACATCAACAGCAGCAA------CATACACAGCTGCATTACCAGCA---GCTGCAGCAGC---AG-----------------------------------------CAACTTCAGCAATAT-AAT--ACTGG--------------------------------------CAAT---C---AGT---ATTACCA------------------TCAACAGCTGCAGTTTCGGCAACAG------------------CA--GCAGCAACAATTG------------TTACGTCAGCAGCAGCAACTAGAGCCCACGCAGGCTGCTCTCCA--------------------------ACAGCAGCA------ACAACAACTG------------------CAGCAGCAGCAAC------------------------------------------AACAACTGAGACAGTCAT------------------------TT-----------GTTGCC-GCCAACATGGCT
droVir3	scaffold_595:127-199 -		C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAC---------------------------ATCAACA------TCAACATCAA------------------CATCAACATCAAC------------------------------------------ATCAACATCAACATCAAT-------------------------------------ATCAAT-ATCAATATCAAT
droMoj3	scaffold_6328:2997363-2997585 +		AG------CAGCATCAACAGCAGCAG------CAGCA---GCAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGCAGCAG-CAT--CAACAGCAGCAGCAGCAGCAGCAT------------------C--AA---C---AAC---AGCATCA------------------ACAACAGAAGCAGCA------ACAGCAACTGCAGCTG-------C--AA--------ATGC---------A---GCAACAGCAGC-----------AGCAGAAGAAACTGCAGCAGC---------------------------AACAACA------ACAA------------------------CAACAACAACAAC------------------------------------------AGCAGCAGCAACAACAAC-------------------------------------AACAGC-AGCAGCA--GCA
droGri2	scaffold_7265:4117-4339 +		AG------CAGCAGCAGCAGCAGCAG------CGTCA---ACATCA---GCAGCA---G--------------------------------------------------------TAGCAGCAGCAGTTA-AAA--CAACAGCAGCATCAGCAGCAGCAA------------------A--AA---C---------------A------------------GCAGCAGCAACAGCA------GCAGCAGCTAAAACAGCAACAGCA--TC---------------------AGCAGCAGCAGCAGCAGC-----A---------------------GC------------------ATCAGCAGCAGCAGCA------GCAGCAGCAG------------------CAGCAGCAGCTAA------------------------------------------AACAACAACAACAGCAGG-------------------------------------ACCAGCAGCAAACTTCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AG------CAGAATCCGCAG------------------------------------------------C---AGCAGGGATCCAAAT------CCAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCCTCAGCTG------------------AAAAT---T---------------A------------------GCCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAGCA------CCAACATCCA------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAT-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................AGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------A.........................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CATCCA------------------CATCAACATCAA.....................................................................................................................	18	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TCAGCTG------------------AAAAT---T---------------A------------------GCCACAGATACAGA............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AG------CAGAATCCGCAG------------------------------------------------C---AGCAGGGATCCAAAT------CCAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCCTCAGCTG------------------AAAAT---T---------------A------------------GCCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAGCA------CCAACATCCA------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
AG------CAGAATCCGCAG------------------------------------------------C---AGCAGGGATCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1
........................................................................AGCAGGGATCCAAAT------CCAGGAGCGGGTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	1

dm3

AG------CAGAATCCGCAGCAG---------------------------------------------C---AGCAGGGATCCAAAT------CGAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--GATATGCGCCAACAGCTTCAGTTG------------------AAAAT---C---------------A------------------GTCACAGATACAGAT------ACAGTCACTTACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAA------------------------------------CATCAACATCAAA------------------------------------------GCCAAATTCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................G---------------------------------------------C---AGCAGGGATCCAAAT------CGAGGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TCCAAAT------CGAGGAGCGGGTCCCAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CAGCGCAAGC-----GAGTCCTCGTGAGC...............................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TTCAGTTG------------------AAAAT---C---------------A------------------GTCACAGATACAGA............................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AG---------------------------------------------C---AGCAGGGATCCAAAT------CGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CCC--AA---------------------ACGCACACCAGCGCAAGC-----GAG..........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACAGATACAGAT------ACAGTCACTC...........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................AGCAG---------------------------------------------C---AGCAGGGATCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................GC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------..........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................CGTGAGCCTCCATCCAC---------------------------ATCAA------------------------------------CATC.............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............CCGCAGCAG---------------------------------------------C---AGCAGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGCAGCAG---------------------------------------------C---AGCAGGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGAATCCGCAGCAG---------------------------------------------C---AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGCAGCAG---------------------------------------------C---AGCAGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................GCAGCAG---------------------------------------------C---AGCAGGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AG------CAGAATTCGCAGCAGCCG------CAGCC---GCAGCA---GCA---------------GC---AGCAGGGATCCAAAT------CTAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--CATATGCTCCAACAGCCTCAGCTG------------------AAAAT---C---CCT---GCCAGCA------------------ATCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCAA------------------------------------------CATCAAAGCCAACATCA------------------------ACACCAACAACAACACC----------------------------------------------AACATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................GATCCAAAT------CTAGGAGCGGGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................GAT------ACAGTCACTCACACAGACATACCC--A..........................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0

droYak3

AG------CAGAATCCGCAGCAGCCG------CA---------------------------------GC---AGCAGGGATCCAAAT------CAAGGAGCGGGTCCCAGACTGTAAGTTCCTGCAATTT-AAT--CATATGCGCCAACAGCCTTAGCTG------------------AAAAT---C---CCT---GCCAGCA------------------ATCACAGATACAGAT------ACAGTCACTCACACAGACATACCC--AA---------------------ACGCACCCCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCCAC---------------------------ATCCACA------TCAA------------------------CATCCACATCAAA------------------------------------------GCCAACACCAACAACAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............TCCGCAGCAGCCG------CA---------------------------------GC---AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............TCCGCAGCAGCCG------CA---------------------------------GC---AGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.G------CAGAATCCGCAGCAGCCG------CA---------------------------------GC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................GATCCAAAT------CAAGGAGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAACAACAAC-------------------------------------ACCATT-ACCAAC......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AG------CAAAATCAGCAGCAGCCG------CAACA---GCAGCA---GCAGCA---G---TT---GC---AGCAGGGAACCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATAT-AAT--CATTTGCGCCAATGGTCTCAGTTA------------------AAAAT---C---CAT---GTAAAAAAACAAAAAACAAATCACATATACAGATACAGAT------ACAGTCGCACACACAGATACACCA--GC---------------------ACGCACACCAACGCAAGC-----GAATCCTCGTAAGCCTCCATCAGCATCCACATACACATCAATAACAAC---AACAA---------CATCAACAACAACATCATCAACAACTACATCAACATCAAA------------------------------------------GCC------------AAC-------------------------------------ACCATT-ACCAACTTTGCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AG------CAGCAACAGCAG------------------------------------------------T---CGCTGGCAGCCAAGT------CGAGGAGCGGGTCGCAGACTGTAAGTTTTGGCAATTT-AAT--CATTTGTGCCAACGGCCCCAGCTG------------------AAAAC---C---CAT---GCCAGAA------------------ATCACAGACTCAGAC------ACAGTCACCCACACAGATACACCA--GC---------------------ACGCACACCAGCGCAAGC-----GAGTCCTCGTGAGCCTCCATCAAC---------------------------ATCAAAA------------------------------------CCAACATCAAA------------------------------------------GCCAACTGC------AAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AG---------AATCCGCAACAGCAG------CAGCCGCAACAGCA---ACAGCAGCCGCAACA---GC---AGCTGGGATCCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCCTTAGCTG------------------AAAAT---C---CAT---GCCAAAA------------------ATCACAGATTCAGAT------ACAGTCACTCACACAGATA-----------------------------------CACCAGCGCAAGC-----GAATCCTCGTAAGCCTCCATCAAC---------------------------ACCAAAATCAGAATCAAAATCAA------------------AATCAAAATCAGA------------------ACCAAGCTCAACATCAAAGCCAAAACCAAAACCATAACGAAAAC---CCAAAG---CGAA-------------ACCAACACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCTGCAGCAGAATCCGCAGCAGCCG------CAACA---GCAGCA---GCAACA---G---TT---GC---AGCAGGGATCCAAGT------CCAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTTTAGCTG------------------AAAAC---C---CGT---AGCAGAA------------------ATCACAAATACAGAT------ACAGTCACACACACAGATACACCA--AC---------------------ACGCACACCAACGCAAGC-----GAGTCCTCGTAAGCCTCCATCAAC---------------------------AT------------------------------------------CAACATCAAA------------------------------------------GCCAACATCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCTGCAGCAGAATCCGCAGCAGCAG------CAGC---------------AGCA---A---TC---GCAGTCGCAGGGATCCAAGT------CAAGGAGCGGGTCGCAGACTGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTTTAGCTA------------------AAAAC---C---CAT---AGCAGAA------------------ATCACAGATACAGAT------AGAGTCACTCACACAGATACACCA--AC---------------ACCAACACGCACAGCAACGCAAGC-----GAATCCTCGTAAGCCTCCATCAAC---------------------------ATCAAAA------TCAA------------------------------CATCAAAGCCAACATCAACACCAACACCAAT------------------ACCAACATCAATACCAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTTGCAGCAGAATCCGCAGCAGGCG------CAACA------------------------------GC---AGCAGGGATCCAAGT------CGCGGAGCGGGTCGCAGACCGTAAGTTGCTGCAATTT-AAT--CATTTGTGCCAACGGCTCTAGCTGATGCC-------------AAAAT---C---CAT---GGCAGAA------------------GTCACAGATACAGAC------ACAGTCACTCACACAGATAC--CCAAGC---------------------ACACACACCAGCGCAAGC-----GAGTCCTCGTAAGCCTCCATCAAC---------------------------ATCAACA------TCAACATGAA------------------------CATCAAAGCCAAC------------------------------------GCCAACACCAACACCAAC-------------------------------------ACCATT-ACCAACTTCGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AG------CAGCAGCAGCAATCGCAA------CAGCA---GC---------AGAC---A---TC---GC---AGCAAGGATCCAAGT------CTAGGAGCGGGTCGCAGACTGTAAGTCGCTGCAATTT-AAT--CATTTGTGCCAATGGCCTTAGCTG------------------AAA-T---C---CAT---CCCAGAT------------------ATCACAGATACAGAC------ACAGACACAAAAACAGATACAAAT--AC---------------------AGATACCGCAGAGTCATC-----GCATCCTTGTCAGCCTCCATCGAC---------------------------ATCAGAA------TCAA------------------------------AATCAGA------ATCA------------------------AC------ACCA---TTACCACCAGC-------------------------------------ACCAGC-GCCAACACCTTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG------CAGAGCCAGCAACCCCTGACCCCAGCCCA------------------------------GG---CGGCGGGCTCGAAGC------CGCGGAGTGGGTCGCAGACCGTAAGTCGCTGCAATTT-AAT--TATTTGTGCCAATGGCCGCATCTG------------------AAAAGAGTC---------------------------------------CTCCAAAGAT------ACAACTCCCCACAAGGACATTCCA--AG---------------------CCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................ACCGTAAGTCGCTGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
.G------CAGAGCCAGCAACCCCTGACCCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................CAACCCCTGACCCCAGCCCA------------------------------GG---CGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................GAAGC------CGCGGAGTGGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

AG------CAGAACCAGCAACCTTTGACCCCATCCCA------------------------------GT---CGCAGGGTTCGAAGC------CGCGGAGTGGGTCGCAGACCGTAAGTCGCTGCAATTT-AAT--TATTTGTGCCAATGGCTCCGGCTG------------------AAAAGAATC---CTT------------------------------CAAAGA------C------ACCAAACCACACAAGGACACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AG------CAGCAGATACCGCAG---------------------------------------------------TCACAATCCACGACATCGGCCAGGAGCGGGTCCCAGACCGTAAGTCGATGCAATTTTAATGCCACTTATGCCATTC-------------CCAAAGACTATGCTGCAACT---AACACCTGGACACAACA------------------CACACAGATACAGAT------ACA------------GACATACCA--CAACCCACAATGC-ATCATCCACATGCA----------------------------CAGTCTTCATCAAC---------------------------ACCAACG-------CACCAACAA------------------------CATCAAC------------------------------------ACCAACACCAACACCAACACGAAACGCAGCCACAGCAGCGACAGTGCTTTGTTGCAGCAGCAGCAGC-AGCAGCAGCGCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................AG---------------------------------------------------TCACAATCCACGACATCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------ACCAACACCAACACCAACACGAAA........................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A------------------CACACAGATACAGAT------ACA------------GA....................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AG------CAGCAGCAGCAGTTACCG------------------------------------------C---AGTCACAATCCACGACATCGGCCAGAAGCGGGTCCCAGACCGTAAGTCGATGCAATTTTAATGCCACTTATGCCATTC-------------CCAAAGACTATGCTGCAACT---AACACCTGGACACAACA------------------CACACAGATACAGAT------ACA------------GACATACCA--CAACCCACAATGC-ATCATCCACATGCA----------------------------CAGTCTTCATCAAC---------------------------ACCAACG-------CACCAACAA------------------CATCAACATCAAC------------------------------------------ACCAACACCAACACGAAA-------------------------------------CGCAGC-CACAGCAGCGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................GTCACAATCCACGACATCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droWil2

AG------CAACATCAACAGCAGCAA------CATACACAGCTGCATTACCAGCA---GCTGCAGCAGC---AG-----------------------------------------CAACTTCAGCAATAT-AAT--ACTGG--------------------------------------CAAT---C---AGT---ATTACCA------------------TCAACAGCTGCAGTTTCGGCAACAG------------------CA--GCAGCAACAATTG------------TTACGTCAGCAGCAGCAACTAGAGCCCACGCAGGCTGCTCTCCA--------------------------ACAGCAGCA------ACAACAACTG------------------CAGCAGCAGCAAC------------------------------------------AACAACTGAGACAGTCAT------------------------TT-----------GTTGCC-GCCAACATGGCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................TACCA------------------TCAACAGCTGCAGTT...........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................ATTACCA------------------TCAACAGCTGCAGT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................ATTG------------TTACGTCAGCAGCA....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................ATTACCA------------------TCAACAGCTGCA..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACAGTCAT------------------------TT-----------GTTGC..............	19	1	1.00	1	0	0	1	0	0
............................................................TGCAGCAGC---AG-----------------------------------------CAACTTCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................TACCA------------------TCAACAGCTGCAGT............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.........................A------CATACACAGCTGCATTACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................ATTACCA------------------TCAACAGCTGC...............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCAGCAACTAGAGCCCACGCAGGCT..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................CAACAGCTGCAGTTTCGGC......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC------------------------------------------AACAACTGAGACAGT...........................................................	23	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------------------------------------------AACAACTGAGACAGT...........................................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAACAACTG------------------CAGCAGCAGCAAC------------------------------------------..........................................................................	22	2	0.50	1	0	0	0	1	0
........CAACATCAACAGCAGCAA------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------------------------------------AACAACT...................................................................	20	20	0.05	1	0	0	1	0	0

droVir3

C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAC---------------------------ATCAACA------TCAACATCAA------------------CATCAACATCAAC------------------------------------------ATCAACATCAACATCAAT-------------------------------------ATCAAT-ATCAATATCAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAAT-------------------------------------ATCAAT-ATCAATATCA..	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAT-------------------------------------ATCAAT-ATCAATATCA..	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT-------------------------------------ATCAAT-ATCAATATC...	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AG------CAGCATCAACAGCAGCAG------CAGCA---GCAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGCAGCAG-CAT--CAACAGCAGCAGCAGCAGCAGCAT------------------C--AA---C---AAC---AGCATCA------------------ACAACAGAAGCAGCA------ACAGCAACTGCAGCTG-------C--AA--------ATGC---------A---GCAACAGCAGC-----------AGCAGAAGAAACTGCAGCAGC---------------------------AACAACA------ACAA------------------------CAACAACAACAAC------------------------------------------AGCAGCAGCAACAACAAC-------------------------------------AACAGC-AGCAGCA--GCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------AACAGC-AGCAGCA--GC.	22	20	0.25	5	0	0	0	0	5	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------AACAGC-AGCAGC......	19	20	0.20	4	4	0	0	0	0	0
..............................................................................................................................................................................................................................CAACAGAAGCAGCA------ACAGCAA..............................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0
........CAGCATCAACAGCAGCAG------CAGCA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.11	2	2	0	0	0	0	0
.........................................CAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.11	2	2	0	0	0	0	0
...............................................................................................................................CAG-CAT--CAACAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.11	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ACAA------------------------CAACAACAACAAC------------------------------------------AGC.......................................................................	20	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------------------AACAGC-AGCAGCA--GCA	18	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................CAGCAGCAGCAGCAT------------------C--AA---C---AAC---...................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	1	0	0	0	0	0
..............................................................................................................................GCAG-CAT--CAACAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
......................GCAG------CAGCA---GCAGCA---TCAACA---G---------C-----------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
........................................GCAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
.G------CAGCATCAACAGCAGCAG------CAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
.....................................................................................................................GCAGCAGCAGCAG-CAT--CAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
..............................................................................................................................GCAG-CAT--CAACAGCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	1	0	0
........................................GCAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	1	0	0
.G------CAGCATCAACAGCAGCAG------CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	1	0	0
.........AGCATCAACAGCAGCAG------CAGCA---GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAAC-------------------------------------AACAGC-AG..........	23	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................AGCAG-CAT--CAACAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................AACAGCAGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................AGCAGCAGCAGCAGCAGCAT------------------C--AA---C---A........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................CAG-CAT--CAACAGCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
AG------CAGCATCAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAAC-------------------------------------AACAGC-AGCAGCA--G..	28	20	0.05	1	1	0	0	0	0	0
..................AGCAGCAG------CAGCA---GCAGCA---TCAACA---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
................................................................................................................................AG-CAT--CAACAGCAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...............AACAGCAGCAG------CAGCA---GCAGCA---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................CAGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............ATCAACAGCAGCAG------CAGCA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------------AGCAGCAGCAACAACAAC-------------------------------------AACAGC-A...........	29	20	0.05	1	0	0	0	0	1	0
...................................................AACA---G---------C-----------------------------------------------AGCAGCAGCAGCAG-CAT--...............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
................................................................................................................................AG-CAT--CAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................A---TCAACA---G---------C-----------------------------------------------AGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
........CAGCATCAACAGCAGCAG------CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................AACAGCAGCAGCAGCAGCAGCAT------------------.....................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................AACA---G---------C-----------------------------------------------AGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AA------------------------CAACAACAACAAC------------------------------------------AGCAGCAGC.................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CA------ACAA------------------------CAACAACAACAAC------------------------------------------AGCAGCA...................................................................	26	20	0.05	1	0	0	0	1	0	0
........CAGCATCAACAGCAGCAG------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...............AACAGCAGCAG------CAGCA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.........AGCATCAACAGCAGCAG------CAGCA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................A---G---------C-----------------------------------------------AGCAGCAGCAGCAG-CAT--CAACA..........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................AT--CAACAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
..........................................AGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................AGCA---TCAACA---G---------C-----------------------------------------------AGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................A---GCAGCA---TCAACA---G---------C-----------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAAC-------------------------------------AACAGC-AGCAG.......	24	20	0.05	1	0	0	0	0	1	0

droGri2

AG------CAGCAGCAGCAGCAGCAG------CGTCA---ACATCA---GCAGCA---G--------------------------------------------------------TAGCAGCAGCAGTTA-AAA--CAACAGCAGCATCAGCAGCAGCAA------------------A--AA---C---------------A------------------GCAGCAGCAACAGCA------GCAGCAGCTAAAACAGCAACAGCA--TC---------------------AGCAGCAGCAGCAGCAGC-----A---------------------GC------------------ATCAGCAGCAGCAGCA------GCAGCAGCAG------------------CAGCAGCAGCTAA------------------------------------------AACAACAACAACAGCAGG-------------------------------------ACCAGCAGCAAACTTCGCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------GCAGCAGCAG------------------CA...............................................................................................................................	20	20	0.25	5	5	0
.........................................................................................................................................................................................................................................................................A--TC---------------------AGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................	19	20	0.10	2	2	0
............................................................................................................................................................................................................................................................................TC---------------------AGCAGCAGCAGCAGCAGC-----A---------------------.......................................................................................................................................................................................................	21	20	0.10	2	2	0
.............................................A---GCAGCA---G--------------------------------------------------------TAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0
..........................................................................................................................................................................................................................................................................................................GCAGCAGCAGC-----A---------------------GC------------------ATCAGC.............................................................................................................................................................................	20	20	0.05	1	1	0
...................................................................................................................................................................................................................................................................AACAGCA--TC---------------------AGCAGCAGCA..........................................................................................................................................................................................................................................	19	20	0.05	1	1	0
..........................................................................................................................................................................................................................................................................................................................A---------------------GC------------------ATCAGCAGCAGCAGCA------GC...........................................................................................................................................................	21	20	0.05	1	1	0
......................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGC-----A---------------------GC------------------ATCAGCA............................................................................................................................................................................	25	20	0.05	1	1	0

dsi_30567

x:10707697-10707846 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.5	-14.0	-13.9