ID:

dsi_30564

Coordinate:

3r:10853757-10853906 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-33.4	-33.1	-33.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTTTCGCACTCAAAGTTAATGGCTTGGTTAGGCCACGCCCTGCTCATCTAGAATTTCGAAAGCGATTCCCGTAATGGCAGCGAGCCATTAGCCTCAAGTGGCAATGTGGCAAAGTTGCGTCTAAACTTTCCATTTGTTCCGTTTAAGCTGGCCCCTAATCCGCCATCAAATAGTAACTTTCTCCGCTCTTCTTTCGCAGGTTTCTTCAATCAAAGGGAAAAATCAACTGTTAACCGGCGAGTGGACGCA ************************************************.......((((((((.....))(((((((.....)))))))(((......)))...((((.((((((((((.(((((..............))))).))((((.........)))).......))))))))..))))....))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.............................................................AGCGATTCCCGTAGTAGCGGCGA......................................................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................AAAATCAACTGTTAACCGGCGAGT.......	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTTAACCGGCGAGTGGACGC.	20	0	1	1.00	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................ATCAACTGTTAACCGGCGAGTG......	22	0	1	1.00	1	1	0	0	0	0	0	0	0
....................................................................................................................................ATTTGTTCCGTTTAAGCTG...................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
..................AATGGCTTAGTGAGGCCTC.....................................................................................................................................................................................................................	19	3	11	0.91	10	0	2	0	0	3	5	0	0
...............................................................CGATTCCCGTAGTAGCGGC........................................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................TTTTAACCGTCGCGTGGAC...	19	3	9	0.11	1	0	0	0	0	0	0	1	0
................................................................................................................................................TAAGCTGGCCCCTAAGA.........................................................................................	17	2	10	0.10	1	0	0	0	0	0	0	0	1
.............................................................AGCGATTCCCGGTATGGGAG.........................................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	1	0	0	0
..................AATGGCTTAGTGAGGCC.......................................................................................................................................................................................................................	17	2	11	0.09	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................GCCCCTACTCCGCCA....................................................................................	15	1	14	0.07	1	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................ACTGTGAACCTGCGAATGG.....	19	3	19	0.05	1	0	0	0	0	0	0	1	0

Anti-sense strand reads

GCAAAGCGTGAGTTTCAATTACCGAACCAATCCGGTGCGGGACGAGTAGATCTTAAAGCTTTCGCTAAGGGCATTACCGTCGCTCGGTAATCGGAGTTCACCGTTACACCGTTTCAACGCAGATTTGAAAGGTAAACAAGGCAAATTCGACCGGGGATTAGGCGGTAGTTTATCATTGAAAGAGGCGAGAAGAAAGCGTCCAAAGAAGTTAGTTTCCCTTTTTAGTTGACAATTGGCCGCTCACCTGCGT ************************************************.......((((((((.....))(((((((.....)))))))(((......)))...((((.((((((((((.(((((..............))))).))((((.........)))).......))))))))..))))....))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M053 female body
...............................................................................................................................................................................................GAAAGCGTCATCAGAAGTTA.......................................	20	3	6	0.17	1	1	0	0	0	0
......................................................AAAGCGTTCTCTAAAGGCATT...............................................................................................................................................................................	21	3	7	0.14	1	0	1	0	0	0
......................................................................................................................................................................................................TCCAAAGTAGTTAGGTT...................................	17	2	17	0.06	1	0	0	1	0	0
.............................AGCCGGTGCGGGATTAGTA..........................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	1	0
.............................................................................................................................................................................................AGGAAGGCGTCCAAAGATG..........................................	19	3	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 10:50 AM