ID:

dsi_30558

 Coordinate:

2r:5823223-5823335 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intron [2r_5823369_5824566_-]; CDS [2r_5823336_5823368_-]; exon [2r_5823336_5823368_-]; exon [2r_5822707_5823222_-]; CDS [2r_5822707_5823222_-]; intron [2r_5823223_5823335_-]

No Repeatable elements found

Sense Strand Reads

-----------------#################################-----------------------------------------------------------------------------------------------------------------##################################################
CTGTCTAACCATTGCAGACTAATCCGGCTGTAAAGTCTGCCGTCAAATCGGTGAGTGGTCCAGTCCCCGTTTAAAGCCCGAATCCGTGTTGTTTCCAGTGCGCTTTTGTGAATCTCTGCAGATTGTAAAAGATGCCTAACTAACCGCTTTTCAATCTTCTCAGGTAAAGGAGGGCTCGCGGGGCATGAAGACCGCCTACAAGGGATTTAAGAC
**************************************************..(((((((..(((..........(((.((....)).)))......((.(((((((((..(((((....))))).)))))).))))).))).)))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................................................................................CATGAAGACCGCCTACAAGGGATTTAA... 27 0 1 1.00 1 1 0 0 0 0 0 0
...............................AAAGTCTGCCGTCAAATCG................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................................................CGTAAAGGAGGGCTCGCGGGGCATGAA........................ 27 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................CAGGTAAAGGAGGGCTCGCGT................................ 21 1 1 1.00 1 0 0 0 0 0 1 0
.............................................................................................................................................................................GCTCGCGGGTCATGAAGAG..................... 19 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................GGTAAAGGAGGGCTCGCGGGGCATGAA........................ 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................AAAGGAGGGCTCGCGGGGCATG.......................... 22 0 1 1.00 1 0 0 0 0 1 0 0
...............GCACTAATCCGGCTGTAAAGTCTGCCGT.......................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0
....................................CTGCCGAGAAATCGGTGAGGG............................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................................................................ATCGGTAAAGGAGGGCTCGC.................................. 20 3 6 0.17 1 0 0 1 0 0 0 0
................................AAGTCCGCCGTCAAA...................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1

Anti-sense strand reads

GACAGATTGGTAACGTCTGATTAGGCCGACATTTCAGACGGCAGTTTAGCCACTCACCAGGTCAGGGGCAAATTTCGGGCTTAGGCACAACAAAGGTCACGCGAAAACACTTAGAGACGTCTAACATTTTCTACGGATTGATTGGCGAAAAGTTAGAAGAGTCCATTTCCTCCCGAGCGCCCCGTACTTCTGGCGGATGTTCCCTAAATTCTG
**************************************************..(((((((..(((..........(((.((....)).)))......((.(((((((((..(((((....))))).)))))).))))).))).)))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................TTGGCGAAAAGTTAGATGTGT................................................... 21 2 3 6.67 20 19 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................TTAGAGTCGTCTAGCATTGT................................................................................... 20 3 8 2.88 23 0 7 6 1 0 6 2 1 0 0 0 0
..............................................................................................................TTAGAGTCGTCTAGCATTG.................................................................................... 19 3 20 2.30 46 1 26 11 0 0 1 0 4 0 3 0 0
..............................................................................................................TTAGAGTCGTCTAGCATT..................................................................................... 18 2 9 1.11 10 0 5 4 0 0 1 0 0 0 0 0 0
.............................................................................................................CTTAGAGTCGTCTAGCATTT.................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................CACAAGGTCAGGGGC................................................................................................................................................ 15 1 5 1.00 5 0 0 0 5 0 0 0 0 0 0 0 0
.............................................................................................................................................TTGGCGAAAAGTTAGA........................................................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................ATTAGAGTCGTCTAGCATT..................................................................................... 19 3 20 0.55 11 0 6 4 0 0 0 0 1 0 0 0 0
.............................................................................................................................................TTGGCGAAAAGTTAGAAGTAT................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TAGAGTCGTCTAGCATTTT................................................................................... 19 2 4 0.50 2 0 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................AAGATTCTCTACGGATGGAT....................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTGGCGAAAAGTTAGGTGTGT................................................... 21 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TAGAGTCGTCTAGCATTTTG.................................................................................. 20 3 12 0.25 3 0 2 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TTAGAGTCGTCTATCATTTTT.................................................................................. 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGGCGGATGTTCGCT........ 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AATTAGAGTCGTCTAGCATT..................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................CAATTAGAGTCGTCTAGCA....................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TAGAGTCGTCTAGCATT..................................................................................... 17 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TAGAAGGGCCCATTTTCTC......................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......AGGTAACGTCTGATT............................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.ACAGAGTGCTGACGTCTGA................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
................................CTCAGACGGCAGTGAAGC................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 12:36 AM