ID:

dsi_30544

 Coordinate:

3r:10838291-10838440 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTCGAGCTTTTTATTTCGGAGGCATTTGACAATTTATTTGCCAAACTTTGTAAGCGCGCTTTTGGCACAAATTGCTCTGATGTTCTGGCAATTCGTCAAACAAATTTGGCTCGCAGTCCGATGGAAATGTTTGGATGCCTCCAGTTGCACTCGGCTTACTGGCAGACGTATTCGAGGGGGCATTAACACATCAGTGTTAAATTTTAACGACCTATCCTGGCAGATGCGGTGAGAAAGGAAGAGGGGGAG
**************************************************....(((.(((((((((...(((((((..((...)).))))))).)))))).......))).))).((((....((((((((((.......(((((.((.....))..)))))))))))).)))....))))..((((((....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
............................................................................TCAGATGTTCTGGCAGCTCGTCA....................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0
..TCGAGCTTTTTATTTCGG...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................AAACTTTGTACGCGCGCT............................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................TGTTTGGAGGCCTCCA.......................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................GTATTCCAGGGGGCAT.................................................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAATTTTAAAGAACTATCCTG.............................. 22 3 4 0.25 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................GTATTCCAGGGGGCA................................................................... 15 1 11 0.18 2 1 0 0 0 0 1 0 0
..................................................................................................ATTCAAATTTGGCTCGGAGTC................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................ATCCTGGCAGGTGCGGGG.................. 18 2 8 0.13 1 1 0 0 0 0 0 0 0
.......................................................................................................AATTTGGCACGCAGT.................................................................................................................................... 15 1 19 0.11 2 0 1 0 0 0 1 0 0
....................................................................................................................................................................AGACGGATTCTAGGGGGAA................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................GTTAACGAACTAGCCTGGC............................ 19 3 12 0.08 1 0 0 0 0 0 0 1 0
....................................................................................TCAGGCAACTCGTCAAA..................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1
..................................................................................GTTCTGGCCGTTCGTCA....................................................................................................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0 0
...................................................................................................TTCAAATTTGGCTCGGAGTC................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................GTATTCCAGGGGGCATG................................................................. 17 2 19 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AGAAAAGGAGAGGGGGA. 17 2 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TAAGCTCGAAAAATAAAGCCTCCGTAAACTGTTAAATAAACGGTTTGAAACATTCGCGCGAAAACCGTGTTTAACGAGACTACAAGACCGTTAAGCAGTTTGTTTAAACCGAGCGTCAGGCTACCTTTACAAACCTACGGAGGTCAACGTGAGCCGAATGACCGTCTGCATAAGCTCCCCCGTAATTGTGTAGTCACAATTTAAAATTGCTGGATAGGACCGTCTACGCCACTCTTTCCTTCTCCCCCTC
**************************************************....(((.(((((((((...(((((((..((...)).))))))).)))))).......))).))).((((....((((((((((.......(((((.((.....))..)))))))))))).)))....))))..((((((....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................................................................................TTGCAGGATAGGAGCGTC.......................... 18 2 6 15.83 95 69 23 0 3 0 0
............................................................................................................................................................................AGCTCCCTCGTTAGTGTGTAGT........................................................ 22 3 2 1.50 3 0 0 3 0 0 0
..............................................................................................................................................................................................................TTGCAGGATGGGAACGTC.......................... 18 3 20 0.20 4 4 0 0 0 0 0
......................................................................................................................................................................................................................TAGGATCGTCTACGC..................... 15 1 6 0.17 1 0 0 0 0 1 0
..............................................................................................................................................................................................................TTGCAGGATAGGAGCGT........................... 17 2 9 0.11 1 0 0 1 0 0 0
............................................................................................................................................AGGTAAACGTGAGCC............................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:50 AM