dsi_30541

exon [2l_12375795_12376165_+]; CDS [2l_12375795_12376165_+]; intron [2l_12376166_12379715_+]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACTTTTGAAATTCTTCGTTTGAAGTTATCCTTGTTTCATGTTCGTTTTGTCCATTTGGTTGTTTTATTTTAAGTTTGTTTCGTTATAATTTTATATTTTTAAATGTATTGCATGACTTTGCTGCTTTATTTTGACCTTTATGTTTATGTTTTTTAGTTTGTATTTTTGTTTCCGCTA ************************************************************************************************..........((((((.(((((.........((((((......................))))))..........)))))....)))))).........***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	SRR902009 testis
......................GTTTATGGTGCCTTCGGAT.................................................................................................................................................................................................................	19	0	1	2.00	2	1	1	0	0	0	0	0	0	0
....................GTGTTTATGGTGCCTTCGGAT.................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................GGTGCCTTCGGATTTGGC............................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...............TCTGGGTGTTTATGGTGCC........................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGCC...........................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGC............................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TAAATGTATTGCATGACTTTGCTGC.....................................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0
..................................................................................................TATCCTTGTTTCATGTTCGTTTTGTCC.............................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.........................................................................................................................GTCCAGTCGGTGGTTTTATTTT...........................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................GTATTGCATGACTTTGCTGCTT...................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.................................CTTCGGATTTGGCCAAGTTACCT..................................................................................................................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0	0	0	0
....................................................................................................................................TGGTTTATTTCAAGTTTCTTTC................................................................................................	22	3	4	0.25	1	0	0	0	0	0	0	1	0	0
..................................TTCGGATTTGGCCAAGTTACC...................................................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................TGTTAAATGTAGTGCATGGC.............................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................TTAAATGTAGTGCATGGCCT...........................................................	20	3	9	0.11	1	0	0	0	0	0	0	1	0	0
.......................................................................................................................TTGTCCATGTCGTCGTTTTA...............................................................................................................	20	3	17	0.06	1	0	0	0	0	0	0	0	0	1

GGAGTCCCTGTACATAGACCCACAAATACCACGGAAGCCTAAACCGGTTCCATTCAGGTAACACTAAGCTAAATGAAAACTTTAAGAAGCAAACTTCAATAGGAACAAAGTACAAGCAAAACAGGTAAACCAACAAAATAAAATTCAAACAAAGCAATATTAAAATATAAAAATTTACATAACGTACTGAAACGACGAAATAAAACTGGAAATACAAATACAAAAAATCAAACATAAAAACAAAGGCGAT ***************************************************..........((((((.(((((.........((((((......................))))))..........)))))....)))))).........************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body
.................................TAAGCCTCAACCGGTTCCAT.....................................................................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0
.......................AAATACCACGGATGTC...................................................................................................................................................................................................................	16	2	20	0.65	13	0	10	0	3	0
.......................AACTACCACGGAAGCC...................................................................................................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0
.......................AACTACCACGGAAGC....................................................................................................................................................................................................................	15	1	6	0.33	2	0	1	1	0	0
.......................AAATACCACGGATGCC...................................................................................................................................................................................................................	16	1	3	0.33	1	0	0	1	0	0
...............................................................................................................................................................TTAAAATATCAAAGGTTACAT......................................................................	21	3	17	0.12	2	0	0	2	0	0
..................................................................................................................................................AAACAAGGCAATATT.........................................................................................	15	1	12	0.08	1	0	1	0	0	0
.......................TAATACCACGGATGCC...................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................................................AAAAAAATCAAACATAAAAGTAAA......	24	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:12376116-12376365 +	dsi_30541	CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATATTTTTAAATGTAT---------TGCAT------GACTT-T---GC----------------------------TGC-------TTTATTTTGACCTTTATGTTT-ATGT----TTT--TTAGTTTGTATTT------T-------------------TG-T--------------------------TTCC------GCT----------A
droSec2	scaffold_16:911377-911607 +		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACT-------------------------TTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATACTTTTAACTGTATA--------TGTA-------------T---GC----------------------------TGC-------TTTATTTTGCCCTTTATGTTT-ATGT----TTT--TTAGTTTGTATTT------T-------------------TG-T--------------------------TTCC------GCT----------A
dm3	chr2L:12727067-12727317 +		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATTCTTCTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATACTTTTAACTGTAT---------TGCAT------GAGTTTT---GC----------------------------TGC-------TTTATTTTGCCCTTTATGTTT-ATGT----TTT--TTAGTTTGCATTT------T-------------------TG-T--------------------------TTCC------GCT----------T
droEre2	scaffold_4929:12694387-12694646 -		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCGCTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATGCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTT--------GT---------------------------TATAAATGTATA-TTTTAACTGTATTTTATTAACTGCAT------TAGTTTT---GC----------------------------TGC-------TATTTTATGCCCTTTATATTT-ATGT----TTTT-TTATTTCTTATAT------T-------------------TG-T--------------------------TTTT------ACT----------T
droYak3	2L:9166157-9166419 +		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGTCAAGGTAAGTCCATTGTGATTCGATTTCCGTTTGAA---ATGCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTA-A-----TT----------TTAAGTTTGTTAT--------GT---------------------------TATAATTTTATACTTTTTACTGTAT---------TGTTT------GAGTTTT---AC----------------------------TGC-------TTT-TAATGCCATTTAAATTT-ATAT----TTATGTTATTTTGTATTA------T-------------------TGCT--------------------------TTTT------GCTTAAGTAAGAAA
droEug1	scf7180000409122:1117726-1117949 +		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTCGGTCAAGGTAAGTCCATTGTGATTCGATTTATTTATTAA---AATCTT----C----GTTTGA-AGTTATCGTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTTTCTT-A-----GT----------TTTAGTTTGCTT--TAATTGTTT---------------------------TATAAT--------------TTTAT---------TGCAC------GTTTT-TTTAGCTTTCT-----------------------------------TGTTACGT-TT------TT-ATGT----TTT-----------------------------------------------------------------------TTCTGTT---ATT----------T
droBia1	scf7180000302422:216904-217146 -		CCTCAGGGACATGTATCTGGGTGTCTACGGTGCCTTCGGATTCGGCCAAGGTAAGTCCATTGTGATTCGATTTATTATTTAT---ATTCTT----C----GTTTGA-AGTTATTCTTGTTTCATGTTCGT-TATGTCC-ATTTT--GTGTTCTT-A-----AT----------TTATGTTTATTT--TAAT--------------------------------------------CTTTTTATTTGGT---------TGCGT------GTTTTAT---GC----------------------------TTA-------CCGCCTAAGCGTTTTATGTTTTATGTTTGCTTTTGTA--------TAC------TTGTT---------------TG-G--------------------------TTTT------TCT----------A
droTak1	scf7180000415871:1098146-1098368 -		ACTCAGGGACATGTATCTGGGTGTTTACGGTGCCTTCGGATTTGGCCAAGGTAAGTCCACTGTGATTCGATTTATCTTTTAA---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTGTTCCT-A-----AT----------TTAAGTTAGCTT--TACTTGTTT-----------------------------------------TTTACCTTTAT---------TGCAT------GTTTTTT---GC-------------------------------------------------TTTTATGTTT-TTGT----TTTTGTA--------TAT--------ATT---------------TG-T--------------------------T--T------TAT----------T
droEle1	scf7180000491028:2363068-2363316 -		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTTGGATTCGGTCAAGGTAAGTCCATTGTAATTCGACTTAGT-TCGAT---ACTTTT----T----ATTTGA-AATTATTCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGTGTT-A-----GA----------TTAAGTTTGTTT--TAGTTGTTT-----------------------------------TGTTTTTATTATTTTAT---------TGCAT------GTTTT-T---GC----------------------------TTA-------TTTTTTATGCCTTTTATGTTT-TCCT----TTTTGTAATTTGGTTTTG------T-------------------TA-T--------------------------TTAC------ATT----------A
droRho1	scf7180000780043:647558-647788 +		CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTCGGTCAAGGTAAGTTCATTTTAATTCGATTTAGTCTTGAT---ATTCTT----T----CTTGGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGTGTT-A-----GA----------TTACGTTTATTT--TAATGGTTTT------GCTTTC---------------------------------TTTAAT---------TGCGT------ATTCT-T---GC----------------------------TTA-------TTTTGTATGCCTATTATGTTT-TTCT----TTATGTA--------TTT------C-------------------TG----------------------------------------T----------T
droFic1	scf7180000453917:59982-60201 +		ACTCAGGGACATGTATCTCGGTGTTTACGGTGCATTCGGATTCGGTCAAGGTAAGTCCACTGTGATTCGATTTATTTGGATT---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTAT--GTTGTTTT-A-----AA----------TTAAGTTGTGTT---------------------TAC---------------------------------TTTAAT---------TGCAT------GTTTT-T---GCTTTCT-----------------------------------T-TTATTCGT----------------------------------------------TTGATTTTTGTATTTATG-TTTTTAC----------------------TA------TTT----------A
droKik1	scf7180000302472:1125054-1125286 +		CCTCAGGGACATGTATCTGGGTGTTTACGGTGCCTTCGGCTTTGGTCAAGGTGAGTCCATTGTGATTCGATTTAATTTTGAT---ATTCTT----C----GTTTGA-AGTTTTACTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGATTT-A-----GT----------TTAAGTTGTTTT--T------------------------------------------------------ATGTAT---------TGCATGCTTTC----------------TTTTTA----------------------------A-TTTAAAGCCT----------------------------------------------TTGGTTTTGGTTAATGTG-TTTTTATTTGTTCAATATT--------TTAA------TAT----------A
droAna3	scaffold_12916:12675470-12675703 -		CCTCAGGGACATGTATCTCGGTGTTTACGGCGCATTTGGTTTTGGTCAAGGTGAGTTCATTGTGATTCGATTTGATG--GCT---AT---T----T----TTTAGT-GATTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGCCCT-T-------AAG------CTTAAGTTCTATAC---------------------------------------CAAATT------------AATAT---------TGCATGCTTTG------T---GT-------TGG----------------------------G-TGTTA---------------AGGC----TT----------TTAT--TTTATT-AATTT---ATCTGTAACTATG-T--------------------------TTCTGTTTTTTAA----------A
droBip1	scf7180000396769:1026302-1026521 -		CCTCAGGGACATGTATCTGGGTGTTTACGGCGCGTTTGGTTTTGGTCAAGGTGAGTTCATTGTGATTCGATTTGTTG--GCTATT------GCTATATTGTTTTGA-A--TATCCTTGTTTCATGTTCGT-GTTGTCC-ATTTT--GTTGCCTT-A-----GC----------TTAAGTTCTTTTC---------------------------------------TAATTTTAT------------GC---------TGCATGTTTTC------G---GT-TGGG-----------------------------------TGTTA---------------TCGC----TT----------ATGT--TTTATA-AATT-----AC--------TG-C--------------------------T--T------TGT----------T
dp5	4_group4:357875-358114 +		ACTCAGGGACATGTACCTCGGTGTCTATGGCGCATTCGGTTTCGGTCAAGGTGAGTCCATTGTGATTCGATCG-CTGTT------------TATAT----ATTGAA-AAACGTATTTGTTTCATGTTCGT-T-TGTCC-ATTTT--GTGGTTTT-ATTTTTGC----------TTAAGTTTATGTCCTAGTTG---T------GCTTCC---------------------------------------------------------------------------TTTTTGGTTTATGTTTGTTTTCGTTTATTTTGTA--CATTTTATGTTTGGTGTTT-GGGT----TTT--TTCGTTTATGTT---------------------------------------------------------------------T----------T
droPer2	scaffold_68:80202-80392 -		ACTCAGGGACATGTACCTCGGTGTCTATGGCGCATTCGGTTTCGGTCAAGGTGAGTCCATTGTGATTCGATCG-CTGTT------------TATAT----ATTGAA-AAACGTATTTGTTTCATGTTCGT-T-TGTCC-ATTTT--GTGGTTT--ATTTTTGC----------TTAAGTTTATGTCCTAGTTG---T------GCTTCC---------------------------------------------------------------------------TTTTTG---------------------------------------------GTTT-ATGT----------------------------T-------------------TG-T--------------------------TTTC------GTT----------T
droWil2	scf2_1100000004585:2320856-2321039 -		CAAGAGAGATATGTACTTGGGAGTCTATGGTGCCTTCGGTTTCGGACAAGGTAAGCTGATTGTGATTCAATTAATTTCAAAC---TATTTT----C----GTTATCTATATGTATGCGTTTCATGTTTGT-TTCGTCT-TTGTT--TTTGTGGT-T-------ATG------GCT-------------GATGGT--------------T--------TTTAATTGTAAATGCTT----------------------------------------------------------------------------C-------TTT-TAAT--------------------------------------------------------------------------------------------------TC------TAT----------T
droVir3	scaffold_13246:2067325-2067518 +		CCTGAGGAACATGTACTTGGGTGTCTACGGCGCTTTCGGTTTCGGTCAAGGTGAGTTCATTGTGATTCAGTTC-------------------------------GT-AATTATA-----TTCATGTTCGT-TTTGTCGCATT-TATGTTGCTTTT--------ATG------T------------TG---------TCGTTTCATTTCCGTTTAATG----------------------------------------------------------------------------------------------------------TTTGGCTTTTATGTTA-AATA----TTATGCT--------TAT------A-------------------AG-TT---------------TT--TGAATATCGG------GCC----------G
droMoj3	scaffold_6500:3909862-3910045 -		CAAAAGGAACATGTATTTGGGTGTCTATGGTGCCTTCGGTTTCGGTCAAGGTGAGTTCGCTGTGATTCAGTTTTTT----------------------------------------------ATGCTATGTTTTGTGGCATT-TATGTTATCGCT--------A-----TCGT------------TA---------TCGTCCCATTTCCGTTAAATG--------------------------------------------------------------------------------TTTAT----------------------------------------------T---------------------------------TTAGTATATATG-TTTTTATATGTTAAATGTTTTT-----ATGG------CTT----------T
droGri2	scaffold_15126:3862163-3862323 -		ACTGAGGAATATGTATTTGGGTGTCTACGGAGCCTTCGGTGTTGGACAAGGTGAGTTCATTGTGATTCAGTTTATAGCAT---------------------------------------TTTGTGTTCGTTTTTGTCGCATT-TACGTAATTGTT--------ATGTAATCGT------------TA---------TCGTTTCATTTCCGTTCC----------------------------------------------------------------G-----T-----------------------TA--------------------------------------------------------------T-------------------TG-T--------------------------TTAA------TGT----------T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATATTTTTAAATGTAT---------TGCAT------GACTT-T---GC----------------------------TGC-------TTTATTTTGACCTTTATGTTT-ATGT----TTT--TTAGTTTGTATTT------T-------------------TG-T--------------------------TTCC------GCT----------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................GTTTATGGTGCCTTCGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTGTTTATGGTGCCTTCGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GGTGCCTTCGGATTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTGGGTGTTTATGGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAATGTAT---------TGCAT------GACTT-T---GC----------------------------TGC-------................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TATCCTTGTTTCATGTTCGT-TTTGTCC-...................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GTAT---------TGCAT------GACTT-T---GC----------------------------TGC-------TT..............................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACT-------------------------TTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATACTTTTAACTGTATA--------TGTA-------------T---GC----------------------------TGC-------TTTATTTTGCCCTTTATGTTT-ATGT----TTT--TTAGTTTGTATTT------T-------------------TG-T--------------------------TTCC------GCT----------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............ATCTGGGTGTTTATGGTGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	1	0
.........CATGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
........ACATGTATCTGGGTGTTTATGG................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.........CATGTATCTGGGTGTTTATGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........ACATGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........CATGTATCTGGGTGTTTATGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...CAGGGACATGTATCTGGGTGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
...........................TGGTGCCTTCGGATTTGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...........TGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
..........ATGTATCTGGGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0

dm3

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCATTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATTCTTCTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTC--------GT---------------------------TATAATTTTATACTTTTAACTGTAT---------TGCAT------GAGTTTT---GC----------------------------TGC-------TTTATTTTGCCCTTTATGTTT-ATGT----TTT--TTAGTTTGCATTT------T-------------------TG-T--------------------------TTCC------GCT----------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......GACATGTATCTGGGTGTTTATGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGGGACATGTATCTGGGTGTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGGGACATGTATCTGGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TATGGTGCCTTCGGATTTGGCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.....................TGTTTATGGTGCCTTCGGATTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTGGGTGTTTATGGTGCCTTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................TTAACTGTAT---------TGCAT------GAGTTTT---GC----------------------------TGC-------................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGCCTTCGGATTTGGCCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGTTCGT-TTTGTCC-ATTTG--GT..........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TATACTTTTAACTGTAT---------TGCAT------GAGT..............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGCCTTCGGATTTGGCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGTGTTTATGGTGCCTTCGGATTTGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ACTGTAT---------TGCAT------GAGTTTT---GC----------------------------..........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTTCGGATTTGGCCAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TT--TTAGTTTGCATTT------T-------------------TG-G--------------------------G.......................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGCCAAGGTAAGTCCGCTGTGATTCGATTTACTTTTGAA---ATTCTT----C----GTTTGA-AGTTATGCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTT-A-----TT----------TTAAGTTTGTTTT--------GT---------------------------TATAAATGTATA-TTTTAACTGTATTTTATTAACTGCAT------TAGTTTT---GC----------------------------TGC-------TATTTTATGCCCTTTATATTT-ATGT----TTTT-TTATTTCTTATAT------T-------------------TG-T--------------------------TTTT------ACT----------T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................GTTTATGGTGCCTTCGGATTTGGC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.........CATGTATCTGGGTGTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.CTCAGGGACATGTATCTGGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........ATGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.......................TTTATGGTGCCTTCGGATTT...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........TGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............TATCTGGGTGTTTATGGTGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
................CTGGGTGTTTATGGTGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
............GTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0

droYak3

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTTGGTCAAGGTAAGTCCATTGTGATTCGATTTCCGTTTGAA---ATGCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTG--GTTGTTTA-A-----TT----------TTAAGTTTGTTAT--------GT---------------------------TATAATTTTATACTTTTTACTGTAT---------TGTTT------GAGTTTT---AC----------------------------TGC-------TTT-TAATGCCATTTAAATTT-ATAT----TTATGTTATTTTGTATTA------T-------------------TGCT--------------------------TTTT------GCTTAAGTAAGAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................GTTTATGGTGCCTTCGGATTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........CATGTATCTGGGTGTTTATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................GTTTATGGTGCCTTCGGATT....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........CATGTATCTGGGTGTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GTGCCTTCGGATTTGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................GTTTATGGTGCCTTCGGATTTG..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATGTTCGT-TTTGTCC-ATTTG--GTTGTTTA-...................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............ATCTGGGTGTTTATGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................GATTTCCGTTTGAA---ATGCTT----...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GTTT------GAGTTTT---AC----------------------------TGC-------TTT-TAATGCCAT...................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAGTTTT---AC----------------------------TGC-------TTT-TAATGCC.....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GTATCTGGGTGTTTATGGTGCCTTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....AGGGACATGTATCTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........ATGTATCTGGGTGTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................CTTCGGATTTGGTCAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTCGGTCAAGGTAAGTCCATTGTGATTCGATTTATTTATTAA---AATCTT----C----GTTTGA-AGTTATCGTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTTTCTT-A-----GT----------TTTAGTTTGCTT--TAATTGTTT---------------------------TATAAT--------------TTTAT---------TGCAC------GTTTT-TTTAGCTTTCT-----------------------------------TGTTACGT-TT------TT-ATGT----TTT-----------------------------------------------------------------------TTCTGTT---ATT----------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCTCAGGGACATGTATCTGGGTGTCTACGGTGCCTTCGGATTCGGCCAAGGTAAGTCCATTGTGATTCGATTTATTATTTAT---ATTCTT----C----GTTTGA-AGTTATTCTTGTTTCATGTTCGT-TATGTCC-ATTTT--GTGTTCTT-A-----AT----------TTATGTTTATTT--TAAT--------------------------------------------CTTTTTATTTGGT---------TGCGT------GTTTTAT---GC----------------------------TTA-------CCGCCTAAGCGTTTTATGTTTTATGTTTGCTTTTGTA--------TAC------TTGTT---------------TG-G--------------------------TTTT------TCT----------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTCAGGGACATGTATCTGGGTGTTTACGGTGCCTTCGGATTTGGCCAAGGTAAGTCCACTGTGATTCGATTTATCTTTTAA---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTGTTCCT-A-----AT----------TTAAGTTAGCTT--TACTTGTTT-----------------------------------------TTTACCTTTAT---------TGCAT------GTTTTTT---GC-------------------------------------------------TTTTATGTTT-TTGT----TTTTGTA--------TAT--------ATT---------------TG-T--------------------------T--T------TAT----------T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTTGGATTCGGTCAAGGTAAGTCCATTGTAATTCGACTTAGT-TCGAT---ACTTTT----T----ATTTGA-AATTATTCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGTGTT-A-----GA----------TTAAGTTTGTTT--TAGTTGTTT-----------------------------------TGTTTTTATTATTTTAT---------TGCAT------GTTTT-T---GC----------------------------TTA-------TTTTTTATGCCTTTTATGTTT-TCCT----TTTTGTAATTTGGTTTTG------T-------------------TA-T--------------------------TTAC------ATT----------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCTCAGGGACATGTATCTGGGTGTTTATGGTGCCTTCGGATTCGGTCAAGGTAAGTTCATTTTAATTCGATTTAGTCTTGAT---ATTCTT----T----CTTGGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGTGTT-A-----GA----------TTACGTTTATTT--TAATGGTTTT------GCTTTC---------------------------------TTTAAT---------TGCGT------ATTCT-T---GC----------------------------TTA-------TTTTGTATGCCTATTATGTTT-TTCT----TTATGTA--------TTT------C-------------------TG----------------------------------------T----------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTCAGGGACATGTATCTCGGTGTTTACGGTGCATTCGGATTCGGTCAAGGTAAGTCCACTGTGATTCGATTTATTTGGATT---ATTCTT----C----GTTTGA-AGTTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTAT--GTTGTTTT-A-----AA----------TTAAGTTGTGTT---------------------TAC---------------------------------TTTAAT---------TGCAT------GTTTT-T---GCTTTCT-----------------------------------T-TTATTCGT----------------------------------------------TTGATTTTTGTATTTATG-TTTTTAC----------------------TA------TTT----------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCTCAGGGACATGTATCTGGGTGTTTACGGTGCCTTCGGCTTTGGTCAAGGTGAGTCCATTGTGATTCGATTTAATTTTGAT---ATTCTT----C----GTTTGA-AGTTTTACTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGATTT-A-----GT----------TTAAGTTGTTTT--T------------------------------------------------------ATGTAT---------TGCATGCTTTC----------------TTTTTA----------------------------A-TTTAAAGCCT----------------------------------------------TTGGTTTTGGTTAATGTG-TTTTTATTTGTTCAATATT--------TTAA------TAT----------A	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCTCAGGGACATGTATCTCGGTGTTTACGGCGCATTTGGTTTTGGTCAAGGTGAGTTCATTGTGATTCGATTTGATG--GCT---AT---T----T----TTTAGT-GATTATCCTTGTTTCATGTTCGT-TTTGTCC-ATTTT--GTTGCCCT-T-------AAG------CTTAAGTTCTATAC---------------------------------------CAAATT------------AATAT---------TGCATGCTTTG------T---GT-------TGG----------------------------G-TGTTA---------------AGGC----TT----------TTAT--TTTATT-AATTT---ATCTGTAACTATG-T--------------------------TTCTGTTTTTTAA----------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................GTTTACGGCGCATTTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.............TATCTCGGTGTTTACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
......................GTTTACGGCGCATTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................ATAC---------------------------------------CAAATT------------AATAT---------TGCATGCTTTG------T---........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0

droBip1

CCTCAGGGACATGTATCTGGGTGTTTACGGCGCGTTTGGTTTTGGTCAAGGTGAGTTCATTGTGATTCGATTTGTTG--GCTATT------GCTATATTGTTTTGA-A--TATCCTTGTTTCATGTTCGT-GTTGTCC-ATTTT--GTTGCCTT-A-----GC----------TTAAGTTCTTTTC---------------------------------------TAATTTTAT------------GC---------TGCATGTTTTC------G---GT-TGGG-----------------------------------TGTTA---------------TCGC----TT----------ATGT--TTTATA-AATT-----AC--------TG-C--------------------------T--T------TGT----------T	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACTCAGGGACATGTACCTCGGTGTCTATGGCGCATTCGGTTTCGGTCAAGGTGAGTCCATTGTGATTCGATCG-CTGTT------------TATAT----ATTGAA-AAACGTATTTGTTTCATGTTCGT-T-TGTCC-ATTTT--GTGGTTTT-ATTTTTGC----------TTAAGTTTATGTCCTAGTTG---T------GCTTCC---------------------------------------------------------------------------TTTTTGGTTTATGTTTGTTTTCGTTTATTTTGTA--CATTTTATGTTTGGTGTTT-GGGT----TTT--TTCGTTTATGTT---------------------------------------------------------------------T----------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......GACATGTACCTCGGTGTCTATGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ATGTACCTCGGTGTCTATGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GTCTATGGCGCATTCGGTTTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...CAGGGACATGTACCTCGGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........ATGTACCTCGGTGTCTATGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GGACATGTACCTCGGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CATGTACCTCGGTGTCTATGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................GTCTATGGCGCATTCGGTTTCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACTCAGGGACATGTACCTCGGTGTCTATGGCGCATTCGGTTTCGGTCAAGGTGAGTCCATTGTGATTCGATCG-CTGTT------------TATAT----ATTGAA-AAACGTATTTGTTTCATGTTCGT-T-TGTCC-ATTTT--GTGGTTT--ATTTTTGC----------TTAAGTTTATGTCCTAGTTG---T------GCTTCC---------------------------------------------------------------------------TTTTTG---------------------------------------------GTTT-ATGT----------------------------T-------------------TG-T--------------------------TTTC------GTT----------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................GTCTATGGCGCATTCGGTTTCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
........................CTATGGCGCATTCGGTTTCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
........................CTATGGCGCATTCGGTTTCGGTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
......................................................GTCCATTGTGATTCGATCG-CTGT................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
......................GTCTATGGCGCATTCGGTTTCGGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................TCTATGGCGCATTCGGTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
............................GGCGCATTCGGTTTCGGTCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................CTATGGCGCATTCGGTTTCGGTCA..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................GGCGCATTCGGTTTCGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................GCATTCGGTTTCGGTCAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............GTACCTCGGTGTCTATGGCGCATTC.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
......................GTCTATGGCGCATTCGGTTTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........ATGTACCTCGGTGTCTATGGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
....................................................................................................................TGTTTCATGTTCGT-T-TGTC.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

CAAGAGAGATATGTACTTGGGAGTCTATGGTGCCTTCGGTTTCGGACAAGGTAAGCTGATTGTGATTCAATTAATTTCAAAC---TATTTT----C----GTTATCTATATGTATGCGTTTCATGTTTGT-TTCGTCT-TTGTT--TTTGTGGT-T-------ATG------GCT-------------GATGGT--------------T--------TTTAATTGTAAATGCTT----------------------------------------------------------------------------C-------TTT-TAAT--------------------------------------------------------------------------------------------------TC------TAT----------T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................CTATGGTGCCTTCGGTTTCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
.......GATATGTACTTGGGAGTCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..AGAGAGATATGTACTTGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................GCCTTCGGTTTCGGACAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......GATATGTACTTGGGAGTCTATGGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.......GATATGTACTTGGGAGTCTATGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...GAGAGATATGTACTTGGGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..AGAGAGATATGTACTTGGGAGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.......GATATGTACTTGGGAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..........ATGTACTTGGGAGTCTATGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0

droVir3

CCTGAGGAACATGTACTTGGGTGTCTACGGCGCTTTCGGTTTCGGTCAAGGTGAGTTCATTGTGATTCAGTTC-------------------------------GT-AATTATA-----TTCATGTTCGT-TTTGTCGCATT-TATGTTGCTTTT--------ATG------T------------TG---------TCGTTTCATTTCCGTTTAATG----------------------------------------------------------------------------------------------------------TTTGGCTTTTATGTTA-AATA----TTATGCT--------TAT------A-------------------AG-TT---------------TT--TGAATATCGG------GCC----------G	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........CATGTACTTGGGTGTCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTCTACGGCGCTTTCGGTTTCGGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TTCGT-TTTGTCGCATT-TATGTTGT.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GCT--------TAT------A-------------------AG-TT---------------TT--TGAATATCGG------GCC----------.	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTCGGTTTCGGTCAAGGTGA........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACATGTACTTGGGTGTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......GAACATGTACTTGGGTGTCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GGCGCTTTCGGTTTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TG------T------------TG---------TCGTTTCATTTCCGTT..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGGAACATGTACTTGGGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GAGTTCATTGTGATTCAGTTC-------------------------------......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CTACGGCGCTTTCGGTTTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTCGGTTTCGGTCAAGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAAAGGAACATGTATTTGGGTGTCTATGGTGCCTTCGGTTTCGGTCAAGGTGAGTTCGCTGTGATTCAGTTTTTT----------------------------------------------ATGCTATGTTTTGTGGCATT-TATGTTATCGCT--------A-----TCGT------------TA---------TCGTCCCATTTCCGTTAAATG--------------------------------------------------------------------------------TTTAT----------------------------------------------T---------------------------------TTAGTATATATG-TTTTTATATGTTAAATGTTTTT-----ATGG------CTT----------T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................GTGTCTATGGTGCCTTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................GTCTATGGTGCCTTCGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................GCTATGTTTTGTGGCATT-T..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droGri2

ACTGAGGAATATGTATTTGGGTGTCTACGGAGCCTTCGGTGTTGGACAAGGTGAGTTCATTGTGATTCAGTTTATAGCAT---------------------------------------TTTGTGTTCGTTTTTGTCGCATT-TACGTAATTGTT--------ATGTAATCGT------------TA---------TCGTTTCATTTCCGTTCC----------------------------------------------------------------G-----T-----------------------TA--------------------------------------------------------------T-------------------TG-T--------------------------TTAA------TGT----------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................GAGCCTTCGGTGTTGGACAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
ACTGAGGAATATGTATTTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0

dsi_30541

2l:12376166-12376315 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.0	-4.9	-4.7