ID:

dsi_30536

 Coordinate:

2r:5822557-5822706 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.7 -37.4 -36.9

Flybase annnotation

CDS [2r_5822707_5823222_-]; exon [2r_5822707_5823222_-]; intron [2r_5822378_5822706_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAACTGCAGAACCATCCGCTTTTCAAGACGCCAGCAGTGGACCGCAGCGTAAGTAATCTGGTGCGGGCGTACGAGCTTCGGCTGCAGCAGCTCCAGTAACTGGAGCTCCTGGGTGCAGCCGTTCACATGCTTGCCGCTAAGCTAAATCGACCACTCATCTCGATGTGCTGTGAATTTATGTTGTTCTCATGCTCTTCTTGTTTTTGTTTCCTTGTCTGTGTCGTGTCTGTGTCCAACTGTATGTCGCC
*************************************************************************(((((..((((((((..((((((((...))))))))......)))))))).......))))).(((..(((...(((((.........)))))..))))))...........***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.........................................................................CGAGCTTCGGCTGCAGCAGCT............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................CTGTGTCCAACTGTATGTCGC. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......GCAGAACCATCCGCTTTTCAAGACGCC........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................GCAGCGTAAGTAATCTGGTGC........................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................TGTGCTGTGAATTTATGTTG................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0
.................CCGCTTTTCAAGACGCCAGCAGTGGAC.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................AAGACGCCAGCAGTGGACCGC........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
..........................................................TCTGGTGCGGGCGTACGAGCTTCGG....................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................TTGTCGGTGCCATGTCTGTGT................ 21 3 5 0.20 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................GTCTCTATCGTGCCTGTGT................ 19 3 10 0.10 1 0 1 0 0 0 0 0 0
....................CTTTTGTAGACGCCAGC..................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1
.............................ACGCCAGCATTGGACT............................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCCTTGACGTCTTGGTAGGCGAAAAGTTCTGCGGTCGTCACCTGGCGTCGCATTCATTAGACCACGCCCGCATGCTCGAAGCCGACGTCGTCGAGGTCATTGACCTCGAGGACCCACGTCGGCAAGTGTACGAACGGCGATTCGATTTAGCTGGTGAGTAGAGCTACACGACACTTAAATACAACAAGAGTACGAGAAGAACAAAAACAAAGGAACAGACACAGCACAGACACAGGTTGACATACAGCGG
*****************************************************************(((((..((((((((..((((((((...))))))))......)))))))).......))))).(((..(((...(((((.........)))))..))))))...........************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
..........................................TGGCGTCGCATTCATTAGACC........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.................GGCGGAAAGTTCTGCGGTCGT.................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CACTCAGCATAGACACAGGT............. 20 3 9 0.56 5 1 0 3 0 1 0 0
..........................................TGGAGTCGCAGTCATTA............................................................................................................................................................................................... 17 2 7 0.43 3 2 0 0 0 1 0 0
..............................................................................................................GACCCACGACAGCAAGTCTAC....................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................TCGAAGTCATTGACC................................................................................................................................................. 15 1 7 0.29 2 0 2 0 0 0 0 0
....................................................................................................................................AATGGTGATTTGATTTAGCTG................................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0
........................................................................TGAGTGAAGCCGACGTCGTCG............................................................................................................................................................. 21 3 10 0.20 2 0 0 0 2 0 0 0
........................................................................................................................................................................................................................ACACTCAGCATAGACACAGGT............. 21 3 5 0.20 1 0 0 1 0 0 0 0
..........................................................................................................................................GATTTGATTTAGCTG................................................................................................. 15 1 14 0.07 1 0 0 0 1 0 0 0
..............................GCGGTGGTCACCTAGCGTCA........................................................................................................................................................................................................ 20 3 14 0.07 1 0 0 0 0 0 1 0
................................................................................................................................................................................................................AAAGGAACACACACAG.......................... 16 1 15 0.07 1 1 0 0 0 0 0 0
....................AAAAAGTTCTGCGGT....................................................................................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0 0
........................................................................................................................................................................................CAACAGTACGAGAAG................................................... 15 1 18 0.06 1 0 0 0 0 0 1 0
....................................................................................................................................................................................ACCACTAGAGTACGAGATG................................................... 19 3 19 0.05 1 0 0 0 0 0 0 1
..............................................................................................................................................................................................TACGAGAAGAACAGAACT.......................................... 18 3 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................AAACAAAGGAACAATCAC............................ 18 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 12:35 AM