dsi_30510

CDS [3r_13327680_13327782_-]; exon [3r_13327680_13327782_-]; intron [3r_13327333_13327679_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTATGCATTATACTTAAGTTTATCCCCAACCGATTTCTTCCAGCGGTCGCGCGCGTGTGTGTGTGTAAGTAGTTATAGATCGTAAGACGGCGCGGATATATCGCGGATCGATTGTAGCTTGGATGACCGGATGTTTCGGCCAAGCGATTGGAGCCGTGTTTTTTCCGGCTTCACAGCGCGTTACCAACTCTTTTA ******************************************************************************************************((((.((((((.(((((..((..((((.....)))).)).))))).))))))))))........................****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
................................................................................................................................................................GATCGATTGTAGCTTGGATGACCG..................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
...............CGCAGGCGAGACTCTAAAAGCACACC.................................................................................................................................................................................................................	26	1	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................CGGATCGATTGTAGCTTGGAT.......................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
..............TTGCAGGCGAGACTCTAAAAGCACACCG................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................AGCGGTCGGAGGCGTGTTTTT................................	21	3	3	0.33	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................GTTTCGGCCAAGCGA................................................	15	0	3	0.33	1	0	0	0	1	0	0	0
...............................................................................................................................TTATTGATCGTAAGAAGG.........................................................................................................	18	2	5	0.20	1	1	0	0	0	0	0	0
........................................................................................................CGCGCGTGTGTGTGTGTA................................................................................................................................	18	0	7	0.14	1	0	0	0	1	0	0	0
.................................................................................................................................................................................AAGACCGGACGTTTCGGA.......................................................	18	3	18	0.06	1	0	0	0	0	0	1	0
........................................................................................................................................GTAAGACGGCGTGGAG..................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................GATCGTAAGACCGCTGGG....................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1
.........................................................................................AACTCCCAGCGGTCGCGC...............................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................GCGGTCGGAGGCGTGTTTT.................................	19	3	20	0.05	1	0	0	0	0	1	0	0
.........................................................................................................................................................................TAGCTTGGATGACTAG.................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0

TCTCTAACGTCGGTAACGTCCGCTCTGAGATTTTCGTGTGGCACGCTTTCCATGTAATACGTAATATGAATTCAAATAGGGGTTGGCTAAAGAAGGTCGCCAGCGCGCGCACACACACACATTCATCAATATCTAGCATTCTGCCGCGCCTATATAGCGCCTAGCTAACATCGAACCTACTGGCCTACAAAGCCGGTTCGCTAACCTCGGCACAAAAAAGGCCGAAGTGTCGCGCAATGGTTGAGAAAAT ****************************************************************((((.((((((.(((((..((..((((.....)))).)).))))).))))))))))........................******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
..............................................................................................GGTCGCCTGCGCGCGC............................................................................................................................................	16	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................CAATGGTTGAGAAAA.	15	0	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................CGATGGTTGAGAAAAT	16	1	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................TCCGCCCCTATATAGCTCCT........................................................................................	20	3	5	0.20	1	0	0	1	0	0	0
...........................AGATTGTCATGTGGCAGGC............................................................................................................................................................................................................	19	3	7	0.14	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................GGCCGAAGTCTCGCGCG..............	17	2	9	0.11	1	0	1	0	0	0	0
.........................................................................AAAGAGGCGTTGGCTAAA...............................................................................................................................................................	18	2	14	0.07	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................GGCCGAAGTGTCTTGC...............	16	2	14	0.07	1	1	0	0	0	0	0
............................................................................................................................................................................................................CCTCGGCAGAAAAAA...............................	15	1	15	0.07	1	0	0	0	1	0	0
...................................................................................................................................TCTAGGATTCAGCCGC.......................................................................................................	16	2	16	0.06	1	0	0	0	0	1	0
.............................................................................................................................................................................................ACGCCGGTTCGCTAGCC............................................	17	2	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................AGCGATGGTTGAGAAAA.	17	2	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................AAAAAAAGGCCGAAG.......................	15	1	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:13327480-13327729 -	dsi_30510	AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------TC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGCCGTGTTTTTT---CCGGCTTCACAG-------CGCGTTACCAA--------CT-CTTTT-----A
droSec2	scaffold_0:14191882-14192131 -	dse_520	AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------AC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGCCGTGTTTTTT---CCGGCTTCACAG-------CTCGTTACCAA--------CT-CTTTT-----A
dm3	chr3R:7777498-7777749 +		AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCTCGC--------------------GC------TCGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------TC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGTCGTGTTTTTT---CCGGCTTCACAG-------CGCGTTACCAA--------CT-CTTTT-----A
droEre2	scaffold_4770:13842470-13842723 -		AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGACCGC----------------------------G--TG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAAACG---------------GTGCGGA----TTTATCGCGGACTAT-T-----GCTAT--------TC---GATCGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGAGTG-------------------CAGCCGAGTTTATA---CCGGC----CAG-------CGCGTTATCAC--------CT-CTTTT-----A
droYak3	3R:16641748-16642020 -		AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTTAT---------------CCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGATCGC--------------------G------TGTGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTAT-T-----GCCATTCGAAGATTC---AATCGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GA-TTGA----------ACGGC----CAG-------CGCGTTAGCAA--------CCACTTTT-----A
droEug1	scf7180000409557:474784-475053 +		AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACA----------CTTAAGTTCAT---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCTCGC--------------------GCGTGAG--TGTA----TGTGTGTGTGTAAGTAGT--------------------------TATA-C---A-TATA---------------------------------------------------TAATAAGACA---------------GCGCGGA----TATATCGCGGACTAT-C-----GCTAT--------CC---AATCTAAGCGTGGATGACCG-G---ACGTT-----------------------------------------------TC------------GG-----CCAAAG----CGATTG-------------------CAGCCGAGTTTTTTTATTTGGC----GAG-------CGTGCTAAAAC--------CT-TTTTT-----A
droBia1	scf7180000299102:8755-9008 -		AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTG----TGTGTGTGTGTAAGTAGT--------------------------TATAGCAT-A-TAGA---------------------------------------------------TCGTAAGAAG---------------GCGCGGATACGTATGTCGCGGACTA-------------------------------AGGCTGGGATGACCC-G---ACGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------CATCCGAGTTTTGT---TCGGC----GAG-------CGCGTTACCAC--------CT-CTTTT-----A
droTak1	scf7180000415409:717281-717525 -		AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATCGC--------------------GCTC----GCGTG----TGTGTGTGTGTAAGTAGT--------------------------TAT------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGCTACATATATCG---ATCTT-T-----GCTAT--------CC---GATCTTTGCTTGGATTACCG-G---ACGTT-----------------------------------------------TT------------G----------------------------------------------------------CCGGC----GAGCGAGCGCCGCGTTACCAT--------AT-CTTTT-----A
droEle1	scf7180000490967:318338-318605 -		AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACA----------CTTAAGTTCAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC--------------------G------CGTGTG----TGTGTGTGTGTAAGTAGT--------------------------TATA-C---A-TAGA---------------------------------------------------TCGTAAGATG---------------GCGCGGA----TATATCGCGGACTCT-AGCACAGCTAA--------CC---GATCTTAGCTTTGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAGCAGTCGATTG-------------------CAGTCGAAATT------TCGGC----GAG-------CGCGTTACCAA--------CT-CTTTT-----A
droRho1	scf7180000780217:6822-7074 -		AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTTCGC----------------------------GTGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------ACGTAAGATG---------------GCGCGGA----TATATCGCGGACTCT-C-----GCTAT--------CC---GATCCTAGCTTTGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------CATTCGAACTT------TCGGC----GAG-------CGCGCTTCCAC--------TT-CTTTT-----A
droFic1	scf7180000453580:5825-6081 -		AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTCAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------TAT------A-TAGA---------------------------------------------------TCGTAAGATG---------------GCGCGGA----TAAATCGCGGACTAT-T-----GGTAT--------CC---GATCCAAGCTTGGATGACCG-G---ATCTT-----------------------------------------------TC------------GG-----CC-AAT----CGATTG-------------------CAGTCGAACTT--T---CCGTC----GAA-------CGCGTATCCAC--------CT-CTTTT-----A
droKik1	scf7180000302255:259737-259975 +		AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACA----------CTTAAGTTCAC---------------CCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTGTTTATGTGAGTGTGTAAGTAGT---T----------------------TAT------C-TAG-------------------------------------------------------------------------------------------------AAATAT-A-----GCCAT---------T---GATCCAAGATTGGATGACCCAGAAAAA--------------------------------------------------AT------------GA-----AT-ACG----AAAACG-------------------AATACGAAT----A---TCGGC----GAGCG-----CGCGTTAACAC--------CT-CTTTT--AATA
droAna3	scaffold_13340:15436236-15436499 -		AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACA----------CTTAAGTTTAC---------------CCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAACTC--------------------G------CGTGTG----TGTGTTTGTGTAAGTAAT---------------------------ATA-CATAA-TAGA---------------------------------------------------ACGTAAGATG---------------TCGCGGA----TT----G---CCTTT-C-----GCTTT--------CTTGAGATCCTGGCTGGAATGGCCCTGGCTACGTT-----------------------------------------------AGG---------TCGTCGGGGCG-ATG----TGATC------------------------TGA----------TCG------CTG-------CGTGTT-CCACATTC---TAT-TTTTT-----A
droBip1	scf7180000396708:4595380-4595610 +		AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAAT----------CTTAAGTTTAT---------------CCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATATC--------------------G------CGTGTG----TGTGTTTGTGTAAGTAA------------------------------------A-TAGA---------------------------------------------------ACGTAAGAA----------------------------------------------------------------------CCAAGCTGGAATGGTCCTGGCTCCGTT-----------------------------------------------AGG---------TCGG----GCA-ATG----AGATCG-------------------CATCCGTAA----T---GCGGC----GAG-------CGTGTT-CCACCTAA----TTATTTTT-----A
dp5	2:22534686-22534968 +		AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTC--GCGTGTGTTT-TGTTGGTGTGTAAGTAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGGAAGATCTC----------T----CCAT---CGA------------------------AC---GATCCTTGCTTGGAAGAG---A---AC---TCTCCCCCTCGATCTCTTCCTCTCTCTTCCTGACTCGTTAATGAAAT--CCCTGTGAGAT-GG-----------------------------------------------------C---TCGGC----GAT-------CGCGTT------------------CTT-----G
droPer2	scaffold_3:5313576-5313858 +		AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTC--GCGTGTGTTT-TGTTGGTGTGTAAGTAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGGAAGATCTC----------T----CCAT---CGA------------------------AC---GATCCTTGCTTGGAAGAG---A---AC---TCTCCCCCTCACTCTCTTCCTCTCTCTTCCTGACTCGTTAATGAAAT--CCCTGTGAGAT-GG-----------------------------------------------------C---TCGGC----GAT-------CGCGTT------------------CTT-----G
droWil2	scf2_1100000004943:3274783-3275066 +		AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGTATAA---------------------AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGATTGT--------------------AA----GTGTGTG----TTTGTGAGTGTAAGTAGT--------------------------T-----------AGA---------------------------------------------------ACTTAAGATG---------------ACTTGGA----C---TTGTGGACCACAT-----TCTAT--------T----------------------------------------------------------------------------------C------------CA-----AA-AAG----CGAAA---------------------AGTAGA-------------GC----GCG-------CGTGTTAAT-CTTATTTAAAT-TTTTTATAA-T
droVir3	scaffold_13047:1686516-1686819 +	dvi_15158	AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAAACTT----TAGAACATTAAGCTTAT---------------CGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGACAAAATGTGTGTGA--AGCTGTGTG------TATGGG----TGTATGTGTGTAAGTACAAGTGTGTGTGCGATTGT------------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATTTTAAAATAAGCCC---------------GCGCTGA----AATGTTTGGAA--------------------------------------------------------------------------------------------------------------------------------------------TTGTTCACCTCATCCTGGGAGGAAGTCGTCCTTATT---TTGGC------G-------TGCCTAAGCAA--------TC-GTTTT-----T
droMoj3	scaffold_6540:5704366-5704672 +		AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATT----------TAGAATATTAA---------------GAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAGAACACATGTATGAGTGAGTGT--G----AGTGTGTG----TGCTTGTGTGTGAGTAT----GCGTGCGCGAGTGTGTAAGTACAAATGATAT-ATTTGAATTTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTT------------------------------GAGCCA----------T----ATTT---TGA------------------------AT---GAAACCAGAGATG----------------------------------------------------------------AA------------AA-----GT-ATG----GAATTATTCATCACCTCC-GAGAGGATGTCGTC------------TC----TAT-------CGT-------------------GGTGT-----A
droGri2	scaffold_15074:6076444-6076585 -		AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGCTTAT---------------CGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGATACA--------------------ATTTTAGTGTGTG----TCCATTTCTGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------TC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGCCGTGTTTTTT---CCGGCTTCACAG-------CGCGTTACCAA--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................GA------------------------TC---GATTGTAGCTTGGATGACCG-.....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CGGA------------------------TC---GATTGTAGCTTGGAT...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTGCAGGCGAGACTCTAAAAGCACACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-----------------------------------------------TC------------GG-----CC-AAG----CGA...........................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................C----------------------------GCGCG----TGTGTGTGTGTA........................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-C-AACCGAT-----------------------------------------------------------TTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------AC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGCCGTGTTTTTT---CCGGCTTCACAG-------CTCGTTACCAA--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GA...................................................................	22	1	1.00	1	0	0	1	0

dm3

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTATA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGCTCGC--------------------GC------TCGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----TATATCGCGGA------------------------TC---GATTGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GAGTCGTGTTTTTT---CCGGCTTCACAG-------CGCGTTACCAA--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT---CCGGCTTCACAG-------CGCGTTA..........................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGCAGCCATTGCAGGCGAGACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GA----TATATCGCGGA------------------------TC---GATTGT....................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TG----TGTGTGTGTGTAAGTAG...................................................................................................................................................................................................................................................................................................................................................................................	19	4	2.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTT---CCGGCTTCACAG-------C................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TTGCAGCCATTGCAGGCGAGACTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGA----T.................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------G....................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................TC---GATTGTAGCTTGGATGACCG-G---A................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CGC--------------------GC------TCGTG----TGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................C------TCGTG----TGTGTGTGTGTAAGTG....................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGAGATTGCAACCATTGCAGGCGAGGCATTAAAAGCACACCGTGTTAAAGGTACATTAC--GCATTACA----------CTTAAGTTTAT---------------CCC-A-AACCGAT-----------------------------------------------------------TTCTTCCAGCGACCGC----------------------------G--TG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAAACG---------------GTGCGGA----TTTATCGCGGACTAT-T-----GCTAT--------TC---GATCGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGAGTG-------------------CAGCCGAGTTTATA---CCGGC----CAG-------CGCGTTATCAC--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................GAGGCATTAAAAGCACACCGTGTTAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CTAT-T-----GCTAT--------TC---GATCGTAGCTT...............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

AGAGATTGCAGCCATTGCAGGCGAGACTCTAAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTTAT---------------CCC-AAAACCGAT-----------------------------------------------------------TTCTTCCAGCGATCGC--------------------G------TGTGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGAT--CGTAAGATCGTAAGGCGCGGA----TATATCGCGGACTAT-T-----GCCATTCGAAGATTC---AATCGTAGCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------GA-TTGA----------ACGGC----CAG-------CGCGTTAGCAA--------CCACTTTT-----A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TCGTAAGGCGCGGA----TATATCGCGGA.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TTGA----------ACGGC----CAG-------CGCGTTAGC........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGCGGA----TATATCGCGGA.......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................CTTCCAGCGATCGC--------------------G------TGTGTG----T...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATTC---AATCGTAGCTTGGAC...........................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------.....................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................G-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------.....................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CGTAAGATCGTAAGGCGCGG.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------TCGTAAGAT--...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------.....................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-.....................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TTGA----------ACGGC----CAG-------CGCGTT...........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----C.......................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGAAATTGCAGCCATTGCAGGCGAAACTCTGAAAGCACACCGCGCGAAAGGTACATTAT--ACATTACA----------CTTAAGTTCAT---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCTAGCGCTCGC--------------------GCGTGAG--TGTA----TGTGTGTGTGTAAGTAGT--------------------------TATA-C---A-TATA---------------------------------------------------TAATAAGACA---------------GCGCGGA----TATATCGCGGACTAT-C-----GCTAT--------CC---AATCTAAGCGTGGATGACCG-G---ACGTT-----------------------------------------------TC------------GG-----CCAAAG----CGATTG-------------------CAGCCGAGTTTTTTTATTTGGC----GAG-------CGTGCTAAAAC--------CT-TTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAGATTGCAGCCATTGCATCCGAGACCCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTG----TGTGTGTGTGTAAGTAGT--------------------------TATAGCAT-A-TAGA---------------------------------------------------TCGTAAGAAG---------------GCGCGGATACGTATGTCGCGGACTA-------------------------------AGGCTGGGATGACCC-G---ACGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------CATCCGAGTTTTGT---TCGGC----GAG-------CGCGTTACCAC--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAGATAGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATCGC--------------------GCTC----GCGTG----TGTGTGTGTGTAAGTAGT--------------------------TAT------A-TAGA---------------------------------------------------TCGTAAGACG---------------GCGCGGCTACATATATCG---ATCTT-T-----GCTAT--------CC---GATCTTTGCTTGGATTACCG-G---ACGTT-----------------------------------------------TT------------G----------------------------------------------------------CCGGC----GAGCGAGCGCCGCGTTACCAT--------AT-CTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAGATTGCAGCCATTGCCGGCGAGACTCTGAAAGCACATCGTGCTAAAGGTACATTAT--GCATTACA----------CTTAAGTTCAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC--------------------G------CGTGTG----TGTGTGTGTGTAAGTAGT--------------------------TATA-C---A-TAGA---------------------------------------------------TCGTAAGATG---------------GCGCGGA----TATATCGCGGACTCT-AGCACAGCTAA--------CC---GATCTTAGCTTTGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAGCAGTCGATTG-------------------CAGTCGAAATT------TCGGC----GAG-------CGCGTTACCAA--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAGATTGCAGCCATTGCAGGCGAGACTTTGAAAGCACACCGTGCTAAAGGTACATTAT--GCATTACA----------TTTAAGTTTAC---------------CCC-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGTTCGC----------------------------GTGTG----TGTGTGTGTGTAAGTAGT--------------------------T--------A-TAGA---------------------------------------------------ACGTAAGATG---------------GCGCGGA----TATATCGCGGACTCT-C-----GCTAT--------CC---GATCCTAGCTTTGATGACCG-G---ATGTT-----------------------------------------------TC------------GG-----CC-AAG----CGATTG-------------------CATTCGAACTT------TCGGC----GAG-------CGCGCTTCCAC--------TT-CTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGAGATTGCAGCCATTGCAGGCGAGACTCTGAAAGCACACCGTGCGAAAGGTACATTAT--GCATTACA----------CCTAAGTTCAC---------------CCC-AAAACCGAT-----------------------------------------------------------CTCTTCCAGCGGTCGC----------------------------GCGCG----TGTGTGTGTGTAAGTAGT--------------------------TAT------A-TAGA---------------------------------------------------TCGTAAGATG---------------GCGCGGA----TAAATCGCGGACTAT-T-----GGTAT--------CC---GATCCAAGCTTGGATGACCG-G---ATCTT-----------------------------------------------TC------------GG-----CC-AAT----CGATTG-------------------CAGTCGAACTT--T---CCGTC----GAA-------CGCGTATCCAC--------CT-CTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGAGATTGCGGCCATTGCAGGCGAGACATTGAAAGCGCACCGCGCCAAAGGTACATTATTTGCAATACA----------CTTAAGTTCAC---------------CCA-A-AACCGAT-----------------------------------------------------------CTCTTCCAGCGCTCGC----------------------------GCGTGTTTATGTGAGTGTGTAAGTAGT---T----------------------TAT------C-TAG-------------------------------------------------------------------------------------------------AAATAT-A-----GCCAT---------T---GATCCAAGATTGGATGACCCAGAAAAA--------------------------------------------------AT------------GA-----AT-ACG----AAAACG-------------------AATACGAAT----A---TCGGC----GAGCG-----CGCGTTAACAC--------CT-CTTTT--AATA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAAATAGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCTAAAGGTACATTAT--ATATTACA----------CTTAAGTTTAC---------------CCCCAAAACCGAT-----------------------------------------------------------CTCTTGCAGCGAACTC--------------------G------CGTGTG----TGTGTTTGTGTAAGTAAT---------------------------ATA-CATAA-TAGA---------------------------------------------------ACGTAAGATG---------------TCGCGGA----TT----G---CCTTT-C-----GCTTT--------CTTGAGATCCTGGCTGGAATGGCCCTGGCTACGTT-----------------------------------------------AGG---------TCGTCGGGGCG-ATG----TGATC------------------------TGA----------TCG------CTG-------CGTGTT-CCACATTC---TAT-TTTTT-----A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TGATC------------------------TGA----------TCG------CTG-------CGTGTT-..........................	21	1	2.00	2	0	0	0	0	0	2
.....TAGCTGCCATTGCTGGCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------AGG---------TCGTCGGGGCG-ATG----TGATC------------------------.................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGATCCTGGCTGGAATGGC........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TGATC------------------------TGA----------TCG------CTG-------CGTG.............................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAGATG---------------TCGCGGA----TT----G---CCTTT-..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................AA-TAGA---------------------------------------------------ACGTAAGATG---------------TCGC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------TGA----------TCG------CTG-------CGTGTT-CCACA.....................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCCCTGGCTACGTT-----------------------------------------------AGG---------.................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

AGAAATTGCTGCCATTGCTGGCGAGACTCTGAAAGCGCACCGCGCCAAAGGTACATTAC--ACATTAAT----------CTTAAGTTTAT---------------CCC-CAAACCGAT-----------------------------------------------------------CTCTTCCAGCGATATC--------------------G------CGTGTG----TGTGTTTGTGTAAGTAA------------------------------------A-TAGA---------------------------------------------------ACGTAAGAA----------------------------------------------------------------------CCAAGCTGGAATGGTCCTGGCTCCGTT-----------------------------------------------AGG---------TCGG----GCA-ATG----AGATCG-------------------CATCCGTAA----T---GCGGC----GAG-------CGTGTT-CCACCTAA----TTATTTTT-----A	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTC--GCGTGTGTTT-TGTTGGTGTGTAAGTAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGGAAGATCTC----------T----CCAT---CGA------------------------AC---GATCCTTGCTTGGAAGAG---A---AC---TCTCCCCCTCGATCTCTTCCTCTCTCTTCCTGACTCGTTAATGAAAT--CCCTGTGAGAT-GG-----------------------------------------------------C---TCGGC----GAT-------CGCGTT------------------CTT-----G	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................TAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGGA.......................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................GAAGATCTC----------T----CCAT---CGA------------------------AC---GA........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTAAGTAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGG........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................GACGGAAGATCTC----------T----CCAT---CGA------------------------AC---GAT.......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTGCTTGGAAGAG---.....................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AA---------------------CTC--GCGTGTGTTT-TGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAGATTGCAGCCATTGCAGCAGAAACATTAAAAGCGCATCGCGCTAAAGGTACATTAT--AG---ACA----------CTTAAGAA---ACATCTCTTCCTTCCCCCGAAACCCGAT-----------------------------------------------------------CTCTTCCAGCGTTCAA---------------------CTC--GCGTGTGTTT-TGTTGGTGTGTAAGTAGC--------------------------T-----------AGA---------------------------------------------------ACATAAGATGACGGAAGATCTC----------T----CCAT---CGA------------------------AC---GATCCTTGCTTGGAAGAG---A---AC---TCTCCCCCTCACTCTCTTCCTCTCTCTTCCTGACTCGTTAATGAAAT--CCCTGTGAGAT-GG-----------------------------------------------------C---TCGGC----GAT-------CGCGTT------------------CTT-----G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTGAGAT-GG-----------------------------------------------------C---TCGGC----GAT-------CGCGT............................	26	1	1.00	1	0	1	0	0	0	0

droWil2

AGAGATTGCAATCATTGCAAGTGAAACAATGAAAGCGCATCGCGCTAAAGGTACATTTA--GTTATAGA--------AATTTAAGTATAA---------------------AAACAATCCTTTCTCTATCCGATCACCCCGTCCGTCCCCCTCAACTCCTCCAACCTCCATCAGTTTATTTTACAGCGATTGT--------------------AA----GTGTGTG----TTTGTGAGTGTAAGTAGT--------------------------T-----------AGA---------------------------------------------------ACTTAAGATG---------------ACTTGGA----C---TTGTGGACCACAT-----TCTAT--------T----------------------------------------------------------------------------------C------------CA-----AA-AAG----CGAAA---------------------AGTAGA-------------GC----GCG-------CGTGTTAAT-CTTATTTAAAT-TTTTTATAA-T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................ATAA---------------------AAACAATCCTTTCTCTATCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................GA---------------------------------------------------ACTTAAGATG---------------ACTTGGA----C---..............................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
........................................................................................................................TTTCTCTATCCGATCACCCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................GTGTGTG----TTTGTGAGTGTAAGT.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................GT--------------------AA----GTGTGTG----TTTGTGAGTGTAAGTA....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AT--------T----------------------------------------------------------------------------------C------------CA-----AA-AAG----CGAAA---------------------AGTAGA-------------GC----G..........................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................GTTTATTTTACAGCGATTGT--------------------AA----GTGT...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............ATTGCAAGTGAAACAATGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................A----GTGTGTG----TTTGTGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0

droVir3

AGAGATTGCAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAGGTACATTAT--ATAAACTT----TAGAACATTAAGCTTAT---------------CGC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGACAAAATGTGTGTGA--AGCTGTGTG------TATGGG----TGTATGTGTGTAAGTACAAGTGTGTGTGCGATTGT------------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGCCATAATTTTAAAATAAGCCC---------------GCGCTGA----AATGTTTGGAA--------------------------------------------------------------------------------------------------------------------------------------------TTGTTCACCTCATCCTGGGAGGAAGTCGTCCTTATT---TTGGC------G-------TGCCTAAGCAA--------TC-GTTTT-----T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................GC-A--AACGAT-----------------------------------------------------------TTTTTACAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GTGTGTGA--AGCTGTGTG------TATG..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGAGGAAGTCGTCCTT..........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CAAAATGTGTGTGA--AGCTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTACAAGTGTGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCGTCCTTATT---TTGGC------.........................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTGA--AGCTGTGTG------TATGGG----TG..................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGAA--------------------------------------------------------------------------------------------------------------------------------------------TTGTTCACCTCAT..............................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GTAAGTACAAGTGTGTGTGCGAT....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGTGA--AGCTGTGTG------TATGGG----T...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGA--AGCTGTGTG------TATGGG----TGT.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAGCTATTGCTACCGAAACACTCAAAGCGCATCGCGCTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	42	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TGTGGCAAAAGCTCAAGTAAG......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAA--------------------------------------------------------------------------------------------------------------------------------------------TTGTTCACCTCATCCT...........................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCGTCCTTATT---TTGG................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TACAGTGACAAAATGTGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGCGATTGT------------------------------CATGCCTGTGTGGCAAAAGCTCAAGTAAGTTGAGC................................................................................................................................................................................................................................................................................................	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................CTCAAAGCGCATCGCGCTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTGA--AGCTGTGTG------TATGGG----TGT.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGAGCCATAATTTTAAAATAA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CTGTGTG------TATGGG----TGTATGTG............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CTGA----AATGTTTGGAA--------------------------------------------------------------------------------------------------------------------------------------------TTGTTC.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................TAAAGGTACATTAT--ATAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTGTGA--AGCTGTGTG------TATGG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC------G-------TGCCTAAGCAA--------TC-GTT........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGACAAAATGTGTGTGA--AGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AAATGTGTGTGA--AGCTGTGTG------..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................A--AGCTGTGTG------TATGGG----TGTAT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAACTT----TAGAACATTAAGCTTAT---------------CGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGTAAGTACAAGTGTGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGTGTG------TATGGG----TGTATGTG............................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GTGTG------TATGGG----TGTATGT.............................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGAGATTGCAGCTATTGCTACTGAAACACTCAAAGCGCATCGCGCTAAAGGTACTTTAT--ATCCTATT----------TAGAATATTAA---------------GAT-T-ATCGAAT-----------------------------------------------------------TTTTTACAGTGAGAACACATGTATGAGTGAGTGT--G----AGTGTGTG----TGCTTGTGTGTGAGTAT----GCGTGCGCGAGTGTGTAAGTACAAATGATAT-ATTTGAATTTTTGATGGCTGTGAGGCACAAGCTCCAGTAAGTT------------------------------GAGCCA----------T----ATTT---TGA------------------------AT---GAAACCAGAGATG----------------------------------------------------------------AA------------AA-----GT-ATG----GAATTATTCATCACCTCC-GAGAGGATGTCGTC------------TC----TAT-------CGT-------------------GGTGT-----A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................CTGAAACACTCAAAGCGCATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................GAGTGT--G----AGTGTGTG----TGCTT...............................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droGri2

AGAGATTGCAGCTATTGCTACTGAAACACTCCAAGCGCATCGCGCTAAAGGTACATT-T--ATATTAAAACTATAGAACGTTAAGCTTAT---------------CGC-C--ACAGAT-----------------------------------------------------------CTTTTACAGTGATACA--------------------ATTTTAGTGTGTG----TCCATTTCTGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_30510

3r:13327530-13327679 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.1	-18.1	-17.7