ID:

dsi_30504

 Coordinate:

3r:10823826-10824002 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3r_10824034_10824040_+]; CDS [3r_10824041_10824100_+]; exon [3r_10824034_10824100_+]

No Repeatable elements found

Sense Strand Reads

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###################
TGTGCAACAAAATTTTATTTGAGTACAAAATATGTTTAAATTTTAGATTCGCGTGTAAGATTTACGAGCTTCTATGACTTCCCAATTGTTTGGTTGTTTAGTTTTATTTTATAATTATCATGACGTCACATCTTACATCCAAGCGAAGCGAGAACAATGAGCGTGAATATTTGAAATTCATATTTCGCAATTAAACGTAGATGCGCTGACCAGCTCTGATTTTTCAGTTAGTTTCGCTTTTAGCCGATCAGCGAACGGTTGAGCCATGGATTTATTT
**************************************************.((((.......)))).((.((((((.........((((((((.(((...........((((.......))))...........))).)))))))).((((((...(((((...............))))).)))))).......)))))).))(((....))).((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.......................................................................................................................................................................................................................................................TCAGCGAACGGTTGAGCCATGGATT..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GCTTTTAGCCGATCAGCG........................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................TTTTAGATTCGCGTGTAAGATTTACGAGC................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCGCTGACCAGCTCTGATTTTTCAGT................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CGGTAGAGCAATGGATTGA... 19 3 20 0.80 16 0 0 0 0 0 11 4 0 0 1
......................................................................................TGTTTGGTTATCTAGTTTTATG......................................................................................................................................................................... 22 3 6 0.33 2 0 0 0 0 2 0 0 0 0 0
......................................................................................TCTTTGGTTATTTAGTTTTATGT........................................................................................................................................................................ 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
......................................................................................TGTTTGGATTTTTAGTTTTATT......................................................................................................................................................................... 22 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
......................................................................................TCTTTGGTTATTTAGTTGTATTT........................................................................................................................................................................ 23 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0
........................................................................................TTTGGTAGTTTAGTT.............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................GTGAATATTTGGAAT.................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................ATCGGTAGAGCAATGGATT..... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACACGTTGTTTTAAAATAAACTCATGTTTTATACAAATTTAAAATCTAAGCGCACATTCTAAATGCTCGAAGATACTGAAGGGTTAACAAACCAACAAATCAAAATAAAATATTAATAGTACTGCAGTGTAGAATGTAGGTTCGCTTCGCTCTTGTTACTCGCACTTATAAACTTTAAGTATAAAGCGTTAATTTGCATCTACGCGACTGGTCGAGACTAAAAAGTCAATCAAAGCGAAAATCGGCTAGTCGCTTGCCAACTCGGTACCTAAATAAA
**************************************************.((((.......)))).((.((((((.........((((((((.(((...........((((.......))))...........))).)))))))).((((((...(((((...............))))).)))))).......)))))).))(((....))).((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
...............................................................TGGTCGAAGAAACTGAAGGGGT................................................................................................................................................................................................ 22 3 2 0.50 1 0 1 0
...............................................................................................................................................................................................................CTGGTCGAGATTAAAA...................................................... 16 1 4 0.25 1 1 0 0
................................................................................................................................................................................................................TGGTCGAGATTAAAAA..................................................... 16 1 4 0.25 1 1 0 0
.....................................................................CAGATACTGAAGGGT................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 1
...............................................................................................................................................................................................................CTGGCCGAGTGTAAAAAGTC.................................................. 20 3 7 0.14 1 1 0 0
..........................................................................ACGGAAGGGTTAGCAAA.......................................................................................................................................................................................... 17 2 14 0.07 1 0 0 1
.....................................................................................................................................................................................................................GAGACTAAAATGTCAA................................................ 16 1 17 0.06 1 1 0 0

Generated: 04/24/2015 at 10:50 AM