ID:

dsi_30488

 Coordinate:

2r:5819615-5819678 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.7 -9.7 -9.7

Flybase annnotation

intron [2r_5819728_5819781_+]; CDS [2r_5819679_5819727_+]; exon [2r_5819679_5819727_+]; CDS [2r_5819520_5819614_+]; exon [2r_5819297_5819614_+]; intron [2r_5819615_5819678_+]

No Repeatable elements found

mature
  1. dsi_30488  2r:5819651-5819665 +
  2. x:10064696-10064710 -
star

Sense Strand Reads

##################################################----------------------------------------------------------------#################################################-
AGGGCGTGCATCCTGGTAGCCAAACTGATTGGACTGGACCTGGAGCTCAAGTAAAAGAACCAAAAGAATAGTGCACTTTAGATTGCTAATGCAAGCTTCTTTTTGAATCCTTAGACCCGTTGACTTCGCCAAGAAGGAGCACCTGAGCGAGGAATTTGTCAAGG
**************************************************......((..((((((((...((((..((((....))))))))...))).)))))..)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
.........................................................................................................................................AGCACCTGAGCGAGGAATTTGTCAAGC 27 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................AAGAAGGAGCACCTGAGCGAGGAATT........ 26 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0
.....................AAACTGATTGGACTGGACCTG.......................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
...........................CTTGGACTGGACCTTTAGCTCA................................................................................................................... 22 3 2 1.50 3 2 0 0 0 1 0 0 0 0 0
..............................................................................................................TCAAACCCGTTGACTTCGCCA................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................GCCAAGAAGGAGCACCTGAGCGAGGAA.......... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
....................CAAACTGATTGGACTGGACCT........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................CAAACTGATTGGACTGGACCG........................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................AGCCAAACTGATTGGACTGGACCT........................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................TGGAGCTCAAGTAAAAGAACC....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................TGGACTGGACCTTTAGCTC.................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGCACCTGAGCGAGGAATTTGTAAAGC 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................AAACTGATTGGACTGGACCT........................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................CAAGAAGGAGCACCTGAGCGAGGAATT........ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............TGGTAGCCAAACTGATTGGACTGGACC............................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................TAATGCAAGCTTCTT............................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................GATGCAAGCTTCTTT.............................................................. 15 1 10 0.50 5 0 0 0 5 0 0 0 0 0 0
.....................................................................................CTGATGCAAGCTTCTT............................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................................................TGATGCAAGCTTCTTT.............................................................. 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................GATGCAAGCTTCTTTC............................................................. 16 2 20 0.15 3 0 0 0 3 0 0 0 0 0 0
....................................................................................GCTGATGCAAGCTTC................................................................. 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
...........................................AGCTCGAGTAAAAGA.......................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................AGTCCCGTCGTCTTCGCCA................................. 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..................................................................................TCGATGATGCAAGCTTCTT............................................................... 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0
........................................TGGTGATCAAGTAAAAGAA......................................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
....................................................................................ACTGATGCAAGCTTCTT............................................................... 17 2 19 0.05 1 0 0 0 1 0 0 0 0 0 0
....................................................................................GGTGATGCAAGCTTCT................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................CGCGGATGCAAGCTTCTT............................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................CTTTGGATTGCTAAT.......................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCCCGCACGTAGGACCATCGGTTTGACTAACCTGACCTGGACCTCGAGTTCATTTTCTTGGTTTTCTTATCACGTGAAATCTAACGATTACGTTCGAAGAAAAACTTAGGAATCTGGGCAACTGAAGCGGTTCTTCCTCGTGGACTCGCTCCTTAAACAGTTCC
**************************************************......((..((((((((...((((..((((....))))))))...))).)))))..)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
......ACGTAGGACCATCGGTTTGACT........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCTAGGCAAATCAAGCGGTT................................ 20 3 8 0.38 3 0 0 3 0 0 0
.............................ACCTGTGCTGGACTTCGAGTT.................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
.................TCGGATTGACGAACCTGAC................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0
...............................................GTTAATGTTCTGGGTTTTCT................................................................................................. 20 3 20 0.15 3 0 0 0 3 0 0
.................TCGGATTGACGAACCTG.................................................................................................................................. 17 2 8 0.13 1 0 1 0 0 0 0
............................................CGAGTTCCTTTTCTAGGT...................................................................................................... 18 2 16 0.06 1 0 0 0 0 1 0
........................GAATAACAAGACCTGGACC......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 12:34 AM