ID:

dsi_30487

 Coordinate:

3r:10823192-10823341 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGTGTCTTCGGATGGTAGCACGGTCTTATATACCGCTGTGATGATTCCAGGTGACTTTTAAAACCAAAGAATGTATGCATATTTAACCAACTGGTGCTACCAAATTAATGTTTCTTTATATCTATTGTACGTATTTTCTTTATATAATTGTATAAGAAGATGATTGCTAACCAATTGTTATGCGCTGGTGTGGACTGTTGTTGGAAATATATACTTGTTCAATACGTTTACCTTATACAAATGATTGCCA
**************************************************....................................(((((((((((.....((((...(((......(((((.(((((((.................)))))))..)))))......))).)))).....)))))))).))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
..........................................................................................................................................................................................GGTGTGGACTGTTGT................................................. 15 0 1 1.00 1 1 0 0 0 0 0
...............................ACCGCCGTGATGATTCGA......................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................GTGTGGACTGTTGTCGG.............................................. 17 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................GACTGTTGATTGAAATA......................................... 17 2 20 0.65 13 13 0 0 0 0 0
GATGTCTTCGGATGG........................................................................................................................................................................................................................................... 15 1 11 0.36 4 0 3 0 0 1 0
.........................................................................................................................................................................................GGGTGTGGACTGTTGTCGG.............................................. 19 2 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................................................................................GTGTGGACTGTTGTCG............................................... 16 1 3 0.33 1 0 0 1 0 0 0
..........................................................................................................................................................................................GGTGTGGACTGTTGTCGGC............................................. 19 2 3 0.33 1 0 0 0 1 0 0
..................................................................AAGAATGTATGCATAC........................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 1 0
.................................................................................................................................................................................................ACTGTTGATGGAAATA......................................... 16 1 5 0.20 1 1 0 0 0 0 0
...........................................................................................................................................................................................GTGTGGACTGTTGTCGGC............................................. 18 2 5 0.20 1 0 0 0 1 0 0
.............................................................................................................................................................................................GTGGACTGTTGTCGG.............................................. 15 1 8 0.13 1 0 1 0 0 0 0
................................................................................................................................................................................GTTATGCGCTGGTTCGAAC....................................................... 19 3 11 0.09 1 0 0 0 1 0 0
................................................................................................................................................................................GTGATGCGCTGGTTCGGAC....................................................... 19 3 12 0.08 1 0 0 0 0 0 1
.............................................................................................................................................................................................GTGGCCTGTCGTTGGAA............................................ 17 2 18 0.06 1 0 1 0 0 0 0

Anti-sense strand reads

CCACAGAAGCCTACCATCGTGCCAGAATATATGGCGACACTACTAAGGTCCACTGAAAATTTTGGTTTCTTACATACGTATAAATTGGTTGACCACGATGGTTTAATTACAAAGAAATATAGATAACATGCATAAAAGAAATATATTAACATATTCTTCTACTAACGATTGGTTAACAATACGCGACCACACCTGACAACAACCTTTATATATGAACAAGTTATGCAAATGGAATATGTTTACTAACGGT
**************************************************....................................(((((((((((.....((((...(((......(((((.(((((((.................)))))))..)))))......))).)))).....)))))))).))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.........................................................................................AGACCACGATGGTTTAAGTTC............................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TCAACAAGTTAGGCAAATGGA................. 21 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................AGACCACGATGGTTTA................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................CCCGGATGGTTTAATTAC............................................................................................................................................ 18 2 5 0.60 3 0 2 0 1 0 0 0
....................................................................................................................................................................................................................TCAACAAGTTAGGCAAATG................... 19 2 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................ACCACGATGGTTTAAGT.............................................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0 0 0
............................................................................................CCACGATGGTTTAAGTTC............................................................................................................................................ 18 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................AGACCACGATGGTTTAAGT.............................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CAAGTTAGGCAAATGGAT................ 18 2 6 0.17 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................TATGCCAATGGAATA.............. 15 1 8 0.13 1 0 0 0 0 1 0 0
................................................................................................................AGAATTATATATATCATGCATA.................................................................................................................... 22 3 10 0.10 1 0 0 0 0 0 1 0
.........................................................................................................................GATAACATGCCTATAAGAC.............................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0
............................ATCTGGCGGCACTACT.............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................................................................................................TCTCAACAAGTTAGGCAAA..................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:50 AM