ID:

dsi_30472

 Coordinate:

2r:5818123-5818272 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGCTTACGTCCCGTGTCTTTAATTCGTGTCGTCTCGAGTAGTTAGTTGTGTTACGCTTTGCCAGTGCTCTCAGCAACACACGCCACACCACACAGCCACAGCAACTGAAATATTCCTAGATATTACAAACACACAAACTAGCACCAGCATTAATTAGCAATTACTATAGGAAACGCAATTAATTTATTTTCCATTGAAGCGGTCAGCGCAATGGACACGAGAAGTACGAAACGAAAGGATGCACGCCAG
**************************************************((((.....(((..(((((....((.......))...........((....))...((.((((((....)))))).))............)))))..))).....))))..........(((((..............))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................CGAGAAGTACGAAACGAAAGGATGC....... 25 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TACGAAACGAAAGGATGCACGCCA. 24 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................AGCGCAATGGACACGAGAAGTACGAAA.................. 27 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TGGACACGAGAAGTACGAAACGAAAGG........... 27 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................GAAGCGGTCAGCGCAATGGACACGA............................. 25 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TGGACACGAGAAGTACGAAACGAAAGGA.......... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................GCAACTGATATATTCCT.................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AGAAGTACCAAACGA............... 15 1 9 0.22 2 0 0 2 0 0 0 0
.TGCTAACGTCCGGTGT......................................................................................................................................................................................................................................... 16 2 11 0.18 2 0 0 0 0 0 2 0
..................TTTAATTCGTGGCGTC........................................................................................................................................................................................................................ 16 1 9 0.11 1 0 0 0 0 0 0 1
.................................................................................................................................................................GTACAATTGGAAACGCAATT..................................................................... 20 3 20 0.10 2 0 0 0 0 2 0 0
..............................................................................................................................................................................................................................AAGTTCGAAACTAAAGGA.......... 18 2 12 0.08 1 0 0 1 0 0 0 0
................TCGTCAATTCGTGTCGT......................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0
..................TTTAATTCGTGTCGACTT...................................................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 1 0 0 0
TTGATTACGTCCCGCG.......................................................................................................................................................................................................................................... 16 2 17 0.06 1 0 0 0 0 0 0 1
.......CGTCCCGCGTCTTTAGCT................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
......................GTTCGTGTCTTCTCGA.................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

AACGAATGCAGGGCACAGAAATTAAGCACAGCAGAGCTCATCAATCAACACAATGCGAAACGGTCACGAGAGTCGTTGTGTGCGGTGTGGTGTGTCGGTGTCGTTGACTTTATAAGGATCTATAATGTTTGTGTGTTTGATCGTGGTCGTAATTAATCGTTAATGATATCCTTTGCGTTAATTAAATAAAAGGTAACTTCGCCAGTCGCGTTACCTGTGCTCTTCATGCTTTGCTTTCCTACGTGCGGTC
**************************************************((((.....(((..(((((....((.......))...........((....))...((.((((((....)))))).))............)))))..))).....))))..........(((((..............))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................AAACGGTCTCGTCAGTCGTTGT........................................................................................................................................................................... 22 3 3 1.00 3 3 0 0 0
.........................................................AAACGGGCTCGACAGTCGTTGT........................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0
.........................GTACTGCAGAGCTCATC................................................................................................................................................................................................................ 17 2 3 0.33 1 0 0 1 0
..............................................................GTCACGAGACTTGTTGTG.......................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0
...........................................................................................................................................................................................................AGTCGCTGTACCTGTGCT............................. 18 2 14 0.07 1 0 0 0 1
.................................................................................................GTGGCGTTGAGTTTATAA....................................................................................................................................... 18 2 16 0.06 1 0 1 0 0
...............................................ACGCAATGCGAAACTGTCC........................................................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0
......................................................................................GTAGTGTGTCGATGTCGTTT................................................................................................................................................ 20 3 19 0.05 1 0 1 0 0
............................................................................................................................................................................TTGCGTTAATTACAT............................................................... 15 1 20 0.05 1 0 1 0 0

Generated: 04/24/2015 at 12:31 AM