ID:

dsi_30460

 Coordinate:

2r:7903008-7903157 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGAGTACCTCGTGTTCTTCGTGATGCTGGCCCTCATACTGATTGTCTTTGGTAAGCGTCCTCCGGAACGAGCCACTAACGAGCCGTTTAACCCTTATCGGGCGCGATATCCGCACCCACCTGGGTTTCTGCTTAAAGGGCGATAAGGTTTTAGGAGGCGGCTATGTCGAAGCACTCACTCACTCGCTCACGAACCTCAGCTAGAATGTTTGCTTCGTTTATAGGCGTTCGATTTTCGATAAGATAACCAG
**************************************************...(((..((((((((((..(((.((...((((.....(((((.....(((.(((.....))).)))....)))))...))))..)))))......))))).)))))..)))...(((.(((............)))..)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................CTCTGTCGGAGTACTCACTCA..................................................................... 21 3 2 5.00 10 10 0 0 0 0 0 0 0 0
.......................TGCTGGCCCTCATACTGATTGTCTTT......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...GTACCTCGTGTTCTTCGTGATGCTGGC............................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.......CTCGTGTTCTTCGTGATGCC............................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............CTTCGTGATGCTGGCCCT......................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......CTCGTGTTCTTCGTGATGCTGGCCCT......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............GTTCTTCGTGATGCTGGCCCC......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................TGATGCTGGCCCTCATACTGATTGTCTT.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................TGCTGGCCCTCATACTGATTGTCTT.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GCTCTGTCGGAGTACTCACTCA..................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................CGAGATATCCGCACC...................................................................................................................................... 15 1 4 0.50 2 0 0 0 0 0 0 0 2 0
.....................................................................................................CGAGATATCCGCACCAAC................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................GCTCTGTCGGAGTACTCACTC...................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCTGTCGGAGTACTCACTCA..................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................CTTAAAGGGCGCTTAGG....................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................GCTTAAAGGGCGGTAGG........................................................................................................ 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................CTGTCGGAGTACTCACTCA..................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGCTTCGTTTATAGA.......................... 15 1 19 0.05 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................CTTAAAGGGCGCTTAGGC...................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCTCATGGAGCACAAGAAGCACTACGACCGGGAGTATGACTAACAGAAACCATTCGCAGGAGGCCTTGCTCGGTGATTGCTCGGCAAATTGGGAATAGCCCGCGCTATAGGCGTGGGTGGACCCAAAGACGAATTTCCCGCTATTCCAAAATCCTCCGCCGATACAGCTTCGTGAGTGAGTGAGCGAGTGCTTGGAGTCGATCTTACAAACGAAGCAAATATCCGCAAGCTAAAAGCTATTCTATTGGTC
**************************************************...(((..((((((((((..(((.((...((((.....(((((.....(((.(((.....))).)))....)))))...))))..)))))......))))).)))))..)))...(((.(((............)))..)))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR902009
testis
..............................................................................................................................................................CCGAGACAGCCTCATGAGTGA....................................................................... 21 3 2 8.50 17 17 0 0 0 0 0 0 0
.................................................CCATTCGCAGGAGGGATT....................................................................................................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0
............................CGGGAGTATGACTGGCAGAAA......................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................CCGAGACAGCTTCATGAGTGAG...................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................CCATTGGCAGGAGGGCTT....................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0
................................................ACCATTGGCAGGAGGGCTT....................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
.................................................CCATTGGCAGGAGGGCTTCC..................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................ATCTCCGTGAGTGAGTGAG.................................................................. 19 2 7 0.29 2 0 0 0 2 0 0 0 0
................................................ACCATTCGCGGGAGGGCTTC...................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
.................................................CCATTCGCAGGAGGA.......................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................CGAGACAGCCTCATGAGTGAG...................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................CAGCTTGTTGAGTGAGTG.................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0
.............................................GGCACCATTCGCAGGA............................................................................................................................................................................................. 16 2 18 0.17 3 0 0 0 0 3 0 0 0
.................................................CCATTGGCAGGAGGGC......................................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 3 0 0 0
............................................AGGCACCATTTGCAGGAGG........................................................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0
............................................TGACACCATTCGCGGGAG............................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................CCGCTCCGTGAGTGAGT..................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0
...................................................ATTCGCGGGAGGGCTTCC..................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.......................................................................................................CCTATAGGCGTGGTTG................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:7902958-7903207 - dsi_30460 GGAGTACCTCGTGTTCTTCGTGATGCTGGCCCTCATACTGATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AACGAGCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTCACTCGCT--C----AC--GAA--------------CCTC-AGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AG
droSec2 scaffold_1:4751099-4751336 - GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AA-----C---------------------G----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTC------GCTC----AC--GAG--------------CCTC-AGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AG
dm3 chr2R:7182799-7183048 - GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AACGAGTCG-TA-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TA----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTCACTCGCT--C----AC--GAG--------------CCAC-AGCTAGAATGTTTGCT-TCG-TTTAAAAGCGTTCGATTTTTGATAAGATAA-CC-----AG
droEre2 scaffold_4845:18605797-18606035 + CGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACG--------------GCCG-TT-----------------T----------------------------AACCC------------GTTATC---GGACGCGATA-----TC----CGCACCCTC-T------GGGTTTC------T------GATTAAA-------------A---G-GCGATAAG---GTTTTTG---------------------G------------------------AGGCGGCCCTGCCCAAGCAC---------TCACAC------T--C----AC--GAG--------------CCCC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AG
droYak3 2R:1957359-1957601 + GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATCGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT--------------GCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GGTTAAA-------------A---G-GCGATAAG---GTT-TAG---------------------G------------------------AGGCGGCCCTA----AGCACTCTAAGCACTCACAC------T--C----AC--GAG--------------CCTC-GGCTAGAATGTGTGAT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AG
droEug1 scf7180000409462:1316061-1316302 + GGAATACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTAATTGTTTTCGGTAAGC----GTCCTCC-GGAA------------------------------------------------CATGCCAAT--------------GCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGTGATA-----TC----CGCACCTACTT------GGATTTC------T------GGGGGAA------A--G--GG---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGAGGCCCTGCCAAAGCAC---------TCACAC------T--C----AC--GAG--------------CCTC-GACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AA
droBia1 scf7180000301754:1107111-1107353 + GGAATACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTGATTGTCTTTGGTAAGC----GTCCTTC-GGAG------------------------------------------------AGAGCCAAT-------TTAAC---CCG-TT-----------------T----------------------------AACCC-------------TTATA---GGGTGCGACA-----TC----CGCACCCACTC------GGGTTTC------T------GGGTAAC------A--G--GG---G-GCGATAAG---GTTTT------------------------------------------------AGGGGGCCCTGTCAGAGCAC---------TCACAC------T--C----TC--GAG--------------CCCA-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AG
droTak1 scf7180000415138:90762-90999 + CGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCGTTGTCTTTGGTAAGA----GTCCACC-------------------------------------------TCCGACAGAACGAG------------------------TT-----------------T----------------------------AACCC-------------TTATC---AAGTGCGATA-----TC----CGCACCCAT-----------TTTC------T------GGGTAAA------A-GG--GG---G-GCGATAAG---GTTTT------------------------------------------------AGGGGGCCCTGCCAAAGCAC---------TCACAC------T--C----CCA-GAG--------------CCCC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CACCCACCA
droEle1 scf7180000491214:2628389-2628644 - CGAGTACCTGGTGTTCTTCGTGATGCTGGCCTTAATACTGATTGTCTTTGGTAAGC----GATCCCC-TTT------------------------------------------------------------------------ACGGGGGGAGGCTAGAGTGCAAAGT-----------------------------ATCC-------------AAGCC---AAGTG--ATT-GAATTT----CGCACCCGTTT------GGGTTAA---GCCAGAAA----TCAGA-----AA--G--GGGCAG-ACCATAAA---GTTT-------------------------------------------------AGGTTACCCTGCCATAGCAC---------TCACAC------A--CATTGAC--GA--------------------GGCTAGAGTGTTTGCC-TCGTTTTATAGGCGTTCGATTTTTGATAAGATAA-CC-----AG
droRho1 scf7180000779263:375553-375814 + GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTAATACTGATTGTCTTTGGTAAGCGAGCGTCCTCC-GGAA------------------------------------------------CGAGCCAT--------CCAGC---CCG-TT-----------------C----------------------------CACCC-------------TTATC---GGGTGCGATA-----TCGGCCCGCGCCCGCTTGGGCATGGGTTTC------T------GGGCAAAGGGGAAA--G--GC---G-GCGATAAG---GTTT-------------------------------------------------AGGGGGCCCTGCCAGAGCAC---------TCACACAC----C--C----AC--GAG--------------CCCC-GGCTAGAGTGTTTGCC-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----A-
droFic1 scf7180000453773:125029-125276 - AGAATACCTGGTGTTCTTCGTGATGTTGGCCCTAATACTGATTGTCTTTGGTAAGC----GTCCTCC-GGAG------------------------------------------------CAGGCAAAT--------------------------------------------------------------------AACC-------------TTATC---GGGTGCGATA-----TC----CGCACCCACTTTC--GC-GGCTTC------T-CGGCTGG-TGA-------A--G--GG---G-ACGATAAG---GTTTTAG---------------------GGGGTTTC-----------------AGAGGGCCCTGCCAAAGCAC---------TCATAC------T--C----TC--AAA--------------CCTC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAAACC-----AA
droKik1 scf7180000302476:21883-22133 - GGAGTACATATTCTTCTTCGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC------------TGAA------------------------------------------------CGAGA----GCCCAC--------GCCG-T-----------------------------------------------------CGTCGTAAAGCCTTATC---GGGTGCGATA-----TC----CGCACCCACTTGT---------GCAGAGC---------------------AGGG--GC---G-GTGATAAGT--GTGTC------------------------------------------------AGGGGGCCCTGCCAAAGCCC---------TCACAC------T--C----AC--AAATACACACGTTCGGGCTCCAGGATAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTGCGATAAGATAA-CA-----CA
droAna3 scaffold_13266:890240-890486 - GGAGTATTTGGTGTTCTTTGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC-------CACC-GGATA-----------------------------------------------GGTGCTGGGGCCC------------AG-GT-----------------T----------------------------GACCC-------------TTATCGCTGGACACGATATGA--TC----CACACTGGG-C------GG-GTGC---G--T-CGA----TTAGG---G-AC--G--GGGCGGTGCGATAGG---GTT--------------------------------------------------AGGGGGCGCTGCCAGAGCAC---------TCACAC------G--C----AC--GAG--------------CCCG-AACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-------
droBip1 scf7180000396730:1897590-1897824 - GGAGTACATGGTGTTCTTTGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC-------CACC-GCAACGGTGCTG------------------------------------------GGCCAA--------------------GT-----------------T----------------------------GACCC-------------TTATC--AGGGCGCGATATGA--TC----CACAG-----T------GGGGTGC---G--T-CAA----TTAGG---G-----A--GG---G-GCGATAGG---GTT--------------------------------------------------AGGGGGCGCTGCCAGAGCAC---------TCACAC------G--C----AC--GAG--------------CCCG-GACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTAGATAAGATAA-CC-----A-
dp5 3:11071217-11071531 - GGAATATATGATATTCTTCGTGATGTTGACCCTGATTCTGCTCGTCTTTGGTAAGC----AAG---C-GG-ACGACACTGA----------------------ACCGAACTGAAACTGAACAAA------------------------TC-----------------G----------------------------AACACTCATCGGATATTCTTTTG---GTCTACGGTA-----TC----CACGTCTCCAGCT---------CTATAGC---------------------CGGGGAGT---A-GTGATAGGTGA----TAGGCGAGCTGGGGTGATAGCGCAGGGGAATCGG----------GGAGAAGGGTGCCCTGCCAGAGCAC---------TCACAC------A--A----ACACGCACACACTCGTGAGCGATTT-GGCTAGCATGTTTGCT-TCGCTTTATAGGCGTTCGATTTTCGATAAGATAA-CT-------
droPer2 scaffold_4:6390170-6390481 - GGAATATATGATATTCTTCGTGATGTTGACCCTGATTCTGCTCGTCTTTGGTAAGC----AAG---C-GG-ACGACACTGA----------------------GCCGAACTGAAACTGAACAAA------------------------TC-----------------G----------------------------AACACTCATCGGATATTCTTTTG---GTCTACGGTA-----TC----CACGTCTCCAGCT---------CTATAGC---------------------CGGGGAGT---A-GTGATAGGTGA----TAGGCGAGC---GGTGATAGCGCAGGGGAATCGG----------GGAGAAGGGTGCCCTGCCAGAGCAC---------TCACTC------A--A----ACACGCACACACACGTGAGCGATTT-GGCTAGCATGTTTGCT-TCGCTTTATAGGCGTTCGATTTTCGATAAGATAA-CT-------
droWil2 scf2_1100000004513:495358-495412 - CGAATATTGGGTTTTCTTTGTGATGTTGGCGCTCATCTTGCTTGTCTTTGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:382499-382767 - AGAGTATTTAGTATTCTTTGTGATGATTACGCTCATACTGGTCGTCTTTGGTAAGCTGA-GTTCTTCCCAAA----------------------------------------------------A----GCCCTG--------ACCGACCTCGCCAAAAGTGCCACCTCCCGAAAACCAAACAGCACACACACACACACACACAT---ATATATATATA---TATATAGATA-----TA----TGTATATATATAT--ATGTGTGTG------T------GGA------------------------------------T--------------------------------------------------AGTGTGCGCTGTTAACATAC---------TCAGAC------G--------T--AAA--------------CATC-GTTTAGAATGTT------GG-TTTATAGGTGTTCGATTTTCGATAAGATAG----------
droMoj3 scaffold_6496:2194572-2194627 - GGAGTATATAATATTCTTTGTGATGCTAGCGCTCATCTTGCTGGTTTTTGGTAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:15243244-15243470 + AGAGTATATTGTGTTCTTTGTGATGATTGCGCTCATCTTGATCGTCTTTGGTAAGC----ACAATTC-----CAGTGTCGACCCTCGCCCCAAATATCGTCACACCTATCTGT-------------AATTTGTTTTTTTT--------------------------------------------------------------TT------------------TT----------------------------------------------------------------------------G---T-ATATTATT---ATTTTAT---------------------GTGGTTTTAGTACGTCTATTTGAGTAGTGTGCTCTGTT------------------------------------------------------------------AACATACTCGTTTTGG-TTTATTAGTGTTCGATTTACGATAAGATAA-GC-----AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAGTACCTCGTGTTCTTCGTGATGCTGGCCCTCATACTGATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AACGAGCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTCACTCGCT--C----AC--GAA--------------CCTC-AGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................TGCTGGCCCTCATACTGATTGTCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
...GTACCTCGTGTTCTTCGTGATGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
.......CTCGTGTTCTTCGTGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...............CTTCGTGATGCTGGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.......CTCGTGTTCTTCGTGATGCTGGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
............GTTCTTCGTGATGCTGGCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................TGATGCTGGCCCTCATACTGATTGTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.......................TGCTGGCCCTCATACTGATTGTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-TCG-TTTATAGA................................15190.05100000000001000000
droSec2
GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AA-----C---------------------G----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTC------GCTC----AC--GAG--------------CCTC-AGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...GTACCTGGTGTTCTTCGTGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
............GTTCTTCGTGATGCTGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...................................................TAAGC----GTCCTCC-GGAA------------------------------------------------CGAGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT---------AACGAGTCG-TA-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TA----CGCACCCACCT------GGGTTTC------T------GCTTAAA-------------G---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGCGGCTATGTCGAAGCAC---------TCACTCACTCGCT--C----AC--GAG--------------CCAC-AGCTAGAATGTTTGCT-TCG-TTTAAAAGCGTTCGATTTTTGATAAGATAA-CC-----AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................AACGAGTCG-TA-----------------T----------------------------AACCC-------------TTATC---GGGC........................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGTACCTGGTGTTCTTCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTGGTGTTCTTCGTGATGCTGGCCCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CATTGTCTTTGGTAAGC----GTCCTCC-GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTTTGGTAAGC----GTCCTCC-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GTACCTGGTGTTCTTCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GTACCTGGTGTTCTTCGTGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCTGGTGTTCTTCGTGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GGCGGCTATGTCGAAGCAC---------TCACTCACT..................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GGTGTTCTTCGTGATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCTGGCCCTCATACTCATTGTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTGGTGTTCTTCGTGATGCTGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCTGGCCCTCATACTCATTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCTGGTGTTCTTCGTGATGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGATGCTGGCCCTCATACTCATTGTCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACCTGGTGTTCTTCGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGGTGTTCTTCGTGATGCTGGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGTACCTGGTGTTCTTCGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTGGTGTTCTTCGTGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGTACCTGGTGTTCTTCGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TACCTGGTGTTCTTCGTGATGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TAAG---GTTTTAG---------------------G------------------------AGGCGTAA................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTTTTGATAAGGA............18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATTGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACG--------------GCCG-TT-----------------T----------------------------AACCC------------GTTATC---GGACGCGATA-----TC----CGCACCCTC-T------GGGTTTC------T------GATTAAA-------------A---G-GCGATAAG---GTTTTTG---------------------G------------------------AGGCGGCCCTGCCCAAGCAC---------TCACAC------T--C----AC--GAG--------------CCCC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........TGTTCTTCGTGATGCTGGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.....................GATGCTGGCCCTCATACTCATTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.....ACCTGGTGTTCTTCGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
............GTTCTTCGTGATGCTGGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
droYak3
GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCATCGTCTTTGGTAAGC----GTCCTCC-GGAA------------------------------------------------CGAGCCACT--------------GCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGCGATA-----TC----CGCACCCACCT------GGGTTTC------T------GGTTAAA-------------A---G-GCGATAAG---GTT-TAG---------------------G------------------------AGGCGGCCCTA----AGCACTCTAAGCACTCACAC------T--C----AC--GAG--------------CCTC-GGCTAGAATGTGTGAT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............GTTCTTCGTGATGCTGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...GTACCTGGTGTTCTTCGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.....ACCTGGTGTTCTTCGTGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.....ACCTGGTGTTCTTCGTGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.......CTGGTGTTCTTCGTGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................TCGTGATGCTGGCCCTCATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................................................................................................GCGATAAG---GTT-TAG---------------------G------------------------AGGCGG..................................................................................................................................2111.00101000000000
.....ACCTGGTGTTCTTCGTGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
GGAATACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTAATTGTTTTCGGTAAGC----GTCCTCC-GGAA------------------------------------------------CATGCCAAT--------------GCCG-TT-----------------T----------------------------AACCC-------------TTATC---GGGCGTGATA-----TC----CGCACCTACTT------GGATTTC------T------GGGGGAA------A--G--GG---G-GCGATAAG---GTTTTAG---------------------G------------------------AGGAGGCCCTGCCAAAGCAC---------TCACAC------T--C----AC--GAG--------------CCTC-GACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AASizeHit CountTotal NormTotal
No Reads
droBia1
GGAATACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTGATTGTCTTTGGTAAGC----GTCCTTC-GGAG------------------------------------------------AGAGCCAAT-------TTAAC---CCG-TT-----------------T----------------------------AACCC-------------TTATA---GGGTGCGACA-----TC----CGCACCCACTC------GGGTTTC------T------GGGTAAC------A--G--GG---G-GCGATAAG---GTTTT------------------------------------------------AGGGGGCCCTGTCAGAGCAC---------TCACAC------T--C----TC--GAG--------------CCCA-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----AGSizeHit CountTotal NormTotal
No Reads
droTak1
CGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTCATACTCGTTGTCTTTGGTAAGA----GTCCACC-------------------------------------------TCCGACAGAACGAG------------------------TT-----------------T----------------------------AACCC-------------TTATC---AAGTGCGATA-----TC----CGCACCCAT-----------TTTC------T------GGGTAAA------A-GG--GG---G-GCGATAAG---GTTTT------------------------------------------------AGGGGGCCCTGCCAAAGCAC---------TCACAC------T--C----CCA-GAG--------------CCCC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CACCCACCASizeHit CountTotal NormTotal
No Reads
droEle1
CGAGTACCTGGTGTTCTTCGTGATGCTGGCCTTAATACTGATTGTCTTTGGTAAGC----GATCCCC-TTT------------------------------------------------------------------------ACGGGGGGAGGCTAGAGTGCAAAGT-----------------------------ATCC-------------AAGCC---AAGTG--ATT-GAATTT----CGCACCCGTTT------GGGTTAA---GCCAGAAA----TCAGA-----AA--G--GGGCAG-ACCATAAA---GTTT-------------------------------------------------AGGTTACCCTGCCATAGCAC---------TCACAC------A--CATTGAC--GA--------------------GGCTAGAGTGTTTGCC-TCGTTTTATAGGCGTTCGATTTTTGATAAGATAA-CC-----AGSizeHit CountTotal NormTotal
No Reads
droRho1
GGAGTACCTGGTGTTCTTCGTGATGCTGGCCCTAATACTGATTGTCTTTGGTAAGCGAGCGTCCTCC-GGAA------------------------------------------------CGAGCCAT--------CCAGC---CCG-TT-----------------C----------------------------CACCC-------------TTATC---GGGTGCGATA-----TCGGCCCGCGCCCGCTTGGGCATGGGTTTC------T------GGGCAAAGGGGAAA--G--GC---G-GCGATAAG---GTTT-------------------------------------------------AGGGGGCCCTGCCAGAGCAC---------TCACACAC----C--C----AC--GAG--------------CCCC-GGCTAGAGTGTTTGCC-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-----A-SizeHit CountTotal NormTotal
No Reads
droFic1
AGAATACCTGGTGTTCTTCGTGATGTTGGCCCTAATACTGATTGTCTTTGGTAAGC----GTCCTCC-GGAG------------------------------------------------CAGGCAAAT--------------------------------------------------------------------AACC-------------TTATC---GGGTGCGATA-----TC----CGCACCCACTTTC--GC-GGCTTC------T-CGGCTGG-TGA-------A--G--GG---G-ACGATAAG---GTTTTAG---------------------GGGGTTTC-----------------AGAGGGCCCTGCCAAAGCAC---------TCATAC------T--C----TC--AAA--------------CCTC-GGCTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAAACC-----AASizeHit CountTotal NormTotal
No Reads
droKik1
GGAGTACATATTCTTCTTCGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC------------TGAA------------------------------------------------CGAGA----GCCCAC--------GCCG-T-----------------------------------------------------CGTCGTAAAGCCTTATC---GGGTGCGATA-----TC----CGCACCCACTTGT---------GCAGAGC---------------------AGGG--GC---G-GTGATAAGT--GTGTC------------------------------------------------AGGGGGCCCTGCCAAAGCCC---------TCACAC------T--C----AC--AAATACACACGTTCGGGCTCCAGGATAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTGCGATAAGATAA-CA-----CASizeHit CountTotal NormTotal
No Reads
droAna3
GGAGTATTTGGTGTTCTTTGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC-------CACC-GGATA-----------------------------------------------GGTGCTGGGGCCC------------AG-GT-----------------T----------------------------GACCC-------------TTATCGCTGGACACGATATGA--TC----CACACTGGG-C------GG-GTGC---G--T-CGA----TTAGG---G-AC--G--GGGCGGTGCGATAGG---GTT--------------------------------------------------AGGGGGCGCTGCCAGAGCAC---------TCACAC------G--C----AC--GAG--------------CCCG-AACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTCGATAAGATAA-CC-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GTTCTTTGTGATGCTGGCCCTCATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002020000
.....................GATGCTGGCCCTCATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...GTATTTGGTGTTCTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................ATGCTGGCCCTCATTCTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............CTTTGTGATGCTGGCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
GGAGTACATGGTGTTCTTTGTGATGCTGGCCCTCATTCTGCTCGTCTTTGGTAAGC-------CACC-GCAACGGTGCTG------------------------------------------GGCCAA--------------------GT-----------------T----------------------------GACCC-------------TTATC--AGGGCGCGATATGA--TC----CACAG-----T------GGGGTGC---G--T-CAA----TTAGG---G-----A--GG---G-GCGATAGG---GTT--------------------------------------------------AGGGGGCGCTGCCAGAGCAC---------TCACAC------G--C----AC--GAG--------------CCCG-GACTAGAATGTTTGCT-TCG-TTTATAGGCGTTCGATTTTAGATAAGATAA-CC-----A-SizeHit CountTotal NormTotal
No Reads
dp5
GGAATATATGATATTCTTCGTGATGTTGACCCTGATTCTGCTCGTCTTTGGTAAGC----AAG---C-GG-ACGACACTGA----------------------ACCGAACTGAAACTGAACAAA------------------------TC-----------------G----------------------------AACACTCATCGGATATTCTTTTG---GTCTACGGTA-----TC----CACGTCTCCAGCT---------CTATAGC---------------------CGGGGAGT---A-GTGATAGGTGA----TAGGCGAGCTGGGGTGATAGCGCAGGGGAATCGG----------GGAGAAGGGTGCCCTGCCAGAGCAC---------TCACAC------A--A----ACACGCACACACTCGTGAGCGATTT-GGCTAGCATGTTTGCT-TCGCTTTATAGGCGTTCGATTTTCGATAAGATAA-CT-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............CTTCGTGATGTTGACCCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
...............CTTCGTGATGTTGACCCTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
......................ATGTTGACCCTGATTCTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................GCCCTGCCAGAGCAC---------TCACA......................................................................................................2011.0010010000000
...................GTGATGTTGACCCTGATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCGATTT-GGCTAGCATG...................................................2111.0010000100000
.........GATATTCTTCGTGATGTTGACCCTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............CTTCGTGATGTTGACCCTGATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
......TATGATATTCTTCGTGATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGAATATATGATATTCTTCGTGATGTTGACCCTGATTCTGCTCGTCTTTGGTAAGC----AAG---C-GG-ACGACACTGA----------------------GCCGAACTGAAACTGAACAAA------------------------TC-----------------G----------------------------AACACTCATCGGATATTCTTTTG---GTCTACGGTA-----TC----CACGTCTCCAGCT---------CTATAGC---------------------CGGGGAGT---A-GTGATAGGTGA----TAGGCGAGC---GGTGATAGCGCAGGGGAATCGG----------GGAGAAGGGTGCCCTGCCAGAGCAC---------TCACTC------A--A----ACACGCACACACACGTGAGCGATTT-GGCTAGCATGTTTGCT-TCGCTTTATAGGCGTTCGATTTTCGATAAGATAA-CT-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....ATATGATATTCTTCGTGATGTTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.004400000
..............TCTTCGTGATGTTGACCCTGATTCTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
...............CTTCGTGATGTTGACCCTGATTCTGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..........................TGACCCTGATTCTGCTCGTCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
...............CTTCGTGATGTTGACCCTGATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..............TCTTCGTGATGTTGACCCTGATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..................CGTGATGTTGACCCTGATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.........................................................................GACACTGA----------------------GCCGAACTGAAACTGAA..................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
.....ATATGATATTCTTCGTGATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..............................CCTGATTCTGCTCGTCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................AACTGAACAAA------------------------TC-----------------G----------------------------AACACTCATCGGAT........................................................................................................................................................................................................................................................................................................2811.001100000
...........TATTCTTCGTGATGTTGACCCTGATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
.............TTCTTCGTGATGTTGACCCTGATTCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........................................................................................................CGAACTGAAACTGAACAAA------------------------TC-----------------G----------------------------AACACT................................................................................................................................................................................................................................................................................................................2811.001100000
............ATTCTTCGTGATGTTGACCCTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............TTCTTCGTGATGTTGACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....ATATGATATTCTTCGTGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.....ATATGATATTCTTCGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........TATTCTTCGTGATGTTGACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....ATATGATATTCTTCGTGATGTTGACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000
droWil2
CGAATATTGGGTTTTCTTTGTGATGTTGGCGCTCATCTTGCTTGTCTTTGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............CTTTGTGATGTTGGCGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00210100
..........GTTTTCTTTGTGATGTTGGCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................ATGTTGGCGCTCATCTTGCTTGTCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..........GTTTTCTTTGTGATGTTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
..................TGTGATGTTGGCGCTCATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............TTTCTTTGTGATGTTGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.GAATATTGGGTTTTCTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
AGAGTATTTAGTATTCTTTGTGATGATTACGCTCATACTGGTCGTCTTTGGTAAGCTGA-GTTCTTCCCAAA----------------------------------------------------A----GCCCTG--------ACCGACCTCGCCAAAAGTGCCACCTCCCGAAAACCAAACAGCACACACACACACACACACAT---ATATATATATA---TATATAGATA-----TA----TGTATATATATAT--ATGTGTGTG------T------GGA------------------------------------T--------------------------------------------------AGTGTGCGCTGTTAACATAC---------TCAGAC------G--------T--AAA--------------CATC-GTTTAGAATGTT------GG-TTTATAGGTGTTCGATTTTCGATAAGATAG----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............CTTTGTGATGATTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATGTT------GG-TTTATAGGTGTTC...........................2411.001000000000000000000000000000010000000000000000000000000000000000
..............TCTTTGTGATGATTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TTTATAGGTGTTCGAT........................1811.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGTGTG------T------GGA------------------------------------T--------------------------------------------------AGTGTGCGCTGTTA..........................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
...................GTGATGATTACGCTCATACTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TTTATAGGTGTTCGATTTTCG...................2311.001000000000000000000000000000010000000000000000000000000000000000
............................ACGCTCATACTGGTCGTCTTTGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTTCGATTTTCGA..................1811.001000001000000000000000000000000000000000000000000000000000000000
............ATTCTTTGTGATGATTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...GTATTTAGTATTCTTTGTGATGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............CTTTGTGATGATTACGCTCATACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
..........GTATTCTTTGTGATGATTACGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................CGCTCATACTGGTCGTCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
............ATTCTTTGTGATGATTACGCTCATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...GTATTTAGTATTCTTTGTGATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...GTATTTAGTATTCTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATA---TATATAGATA-----TA----TGTATATATA.............................................................................................................................................................................................................................................................2550.201000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGTATATATATAT--ATGTGTGT................................................................................................................................................................................................................................................21190.112000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA----TGTATATATATAT--ATGTGT..................................................................................................................................................................................................................................................21170.061000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................CACACACACACACAT---ATATA.....................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
GGAGTATATAATATTCTTTGTGATGCTAGCGCTCATCTTGCTGGTTTTTGGTAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...GTATATAATATTCTTTGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....ATATAATATTCTTTGTGATGCTAGCGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.....ATATAATATTCTTTGTGATGCTAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........ATATTCTTTGTGATGCTAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...........................AGCGCTCATCTTGCTGGTTTTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................TAGCGCTCATCTTGCTGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
AGAGTATATTGTGTTCTTTGTGATGATTGCGCTCATCTTGATCGTCTTTGGTAAGC----ACAATTC-----CAGTGTCGACCCTCGCCCCAAATATCGTCACACCTATCTGT-------------AATTTGTTTTTTTT--------------------------------------------------------------TT------------------TT----------------------------------------------------------------------------G---T-ATATTATT---ATTTTAT---------------------GTGGTTTTAGTACGTCTATTTGAGTAGTGTGCTCTGTT------------------------------------------------------------------AACATACTCGTTTTGG-TTTATTAGTGTTCGATTTACGATAAGATAA-GC-----AGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:51 AM