ID:

dsi_3046

 Coordinate:

3r:10653122-10653275 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.1 -7.0 -6.9 -6.8

Flybase annnotation

five_prime_UTR [3r_10653022_10653886_+]; exon [3r_10653022_10653991_+]

No Repeatable elements found

Sense Strand Reads

##############################################################################################################################################################################################################################################################
GCAGCTCGCAGTGAAATTTCAATCCCTGTTCCGTGTGTGGCCTAGTTAGAGCAAGTAAATCAAAATCAATTGAAGGTTATCTGGACCCTTTGGAATGTCAATTAACAACTGCATTCGCCGAGACACGTGCTGCGAAAGCTGCCTACGAAACAAGTGACCTGGAAAACTTTTAGAAATTTTGGTTATGCAAACGGTTTTGTGAGAGAAATTCGTGTGCCGAACTGTGCTGTAAAAGAAATAAACTCGAAATTGCA
******************************************************************************...(((....((((..................((((((.....))...))))..))))..)))***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR902009
testis
..............................................................................ATCTCGACCCTTTGGAAG.............................................................................................................................................................. 18 2 5 78.00 390 227 134 4 0 1 1 10 13 0 0 0 0 0
..............................................................................ATCTGGACCCTTTGGAATGTC........................................................................................................................................................... 21 0 1 11.00 11 3 7 0 0 0 0 1 0 0 0 0 0 0
..............................................................................ATCTCGACCCTTTGGAAGG............................................................................................................................................................. 19 2 2 9.00 18 17 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATCTCGACCCTTTGGA................................................................................................................................................................ 16 1 4 3.50 14 0 0 11 0 2 0 0 0 0 0 1 0 0
...................................................................................................AATTAAGAACTGCCTTTGCCGA..................................................................................................................................... 22 3 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
..............................................................................ATCTCGACCCTTTGG................................................................................................................................................................. 15 1 7 2.14 15 0 0 8 0 5 1 0 0 0 0 1 0 0
..............................................................................ATCTCGACCCTTTGGAA............................................................................................................................................................... 17 1 3 2.00 6 0 0 6 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGACACGTGCTGCGAAAGCTG................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTGAAGGTTATCTGGACCCT..................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCTCGACCCTTTGGAAGG............................................................................................................................................................. 18 2 5 1.40 7 4 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AATCTCGACCCTTTGGAA............................................................................................................................................................... 18 2 8 1.25 10 0 0 7 0 0 0 2 0 0 0 0 1 0
...............................................................................TCTCGACCCTTTGGA................................................................................................................................................................ 15 1 9 1.22 11 0 0 2 0 5 0 0 0 0 0 4 0 0
...............................................................................TCTCGACCCTTTGGAA............................................................................................................................................................... 16 1 5 1.20 6 0 0 5 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGGTTTTGTGAGAGAAATT............................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTTGTGAGAGAAATTCGTGTG...................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATGCAAACGGTTTTGTGAG................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................ATCTCGACCCTTTGGAATA............................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAACTGCATTCGCCGAGACAC................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................CCTACGAAACAAGTGACCTG............................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TAGTGCAAACGGTTTTGTGAG................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................ACTGCATTCGCCGAGACACG............................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................AAGGTTATCTGGACCCTTTGG................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTGTGCTGTAAAAGAAATAAAC........... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GTGCTGTAAAAGAAAT............... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................AACAAGTGACCTGGAAAACTT..................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AACAAGTGACCTGGAAAACT...................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGCATTCGCCGAGACACGTG............................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGAGAAATTCGTGTGCCGAACT............................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATTCGTGTGCCGAACTGTGCTT......................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ACTGCATTCGCCGAGACACGT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................GGCCTAGTTAGAGCAAG....................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................TGGCCTAGTTAGAGCAAGTAAA................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................TTCAATCCCTGTCGCGT............................................................................................................................................................................................................................ 17 2 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.............................................................................AATCTCGACCCTTTGGAAGG............................................................................................................................................................. 20 3 9 0.56 5 4 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATCTGGACCCTTTGGAAGA............................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TCTTGACCCTTTGGAA............................................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TCTCGACCCTTTGGAAG.............................................................................................................................................................. 17 2 17 0.29 5 0 0 3 0 1 0 0 0 0 0 1 0 0
..............................................................................ATCTTGACCCTTTGGAAG.............................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAACGGTGTTGTGAGTGAGA.............................................. 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................TTAGAGCACGTGAATCA................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................GAGAAGTTCGTGTGGCGTA................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................CCTAGTAAGCGCAAGT...................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGTCGAGCGTCACTTTAAAGTTAGGGACAAGGCACACACCGGATCAATCTCGTTCATTTAGTTTTAGTTAACTTCCAATAGACCTGGGAAACCTTACAGTTAATTGTTGACGTAAGCGGCTCTGTGCACGACGCTTTCGACGGATGCTTTGTTCACTGGACCTTTTGAAAATCTTTAAAACCAATACGTTTGCCAAAACACTCTCTTTAAGCACACGGCTTGACACGACATTTTCTTTATTTGAGCTTTAACGT
*****************************************************************************************************************...(((....((((..................((((((.....))...))))..))))..)))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
..........................................................................................................................................GACGGATGCTTTGTTCACTGG............................................................................................... 21 0 1 9.00 9 6 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGGCTTGACACGACATTTTC................... 20 0 1 5.00 5 4 1 0 0 0 0 0 0 0
.GTCGAGCGTCACTTTAAAGTT........................................................................................................................................................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCACACGGCTTGACACGAC......................... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CACGGCTTGACACGACATTTT.................... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0
..........................................................................................................................................GACGGATGCTTTGTTCACTG................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................TCAATCTCGTTCATTTAGTTT.............................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCAAAACACTCTCTTTAAGC.......................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................TCGACGGATGCTTTGTTCACT................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................TTTAGTTAACTTCCAATAGAC........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TGCACACGGCTTGACACGACA........................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................TCAATCTCGTTCATTTAGTT............................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................CGACGCTTTCGACGGATG............................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................CGGATCAATCTCGTTCATTTA.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................TGCTTTGTTCACTGGACCTTT......................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................AACCAATACGTTTGCCAAAAC....................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................GACGGATGCTTTGTTCAC.................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCGAGCGTCACTTTAAAGTT........................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.GTCGAGCGTCACTTTAAA........................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................CTGGGAAACCTTACAGTTAAT...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCACACGGCTTGACACGACA........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................CAATACGTTTGCCAAAACACT.................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................AAACACTCTCTTTAAGCACAC...................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................CGGCTTGACACGACATTTTCT.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................GGGTCAATCTCGTTCATTTAGTT............................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................GCACACGGCTTGACACGACAT....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................AGTTAACTTCCAATAGACCTG........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................ACACGGCTTGACACGACATTTTCTTTAT.............. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................GGGACAAGGCACACACCGGGT.................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................TTGCCAAAATACTCT.................................................. 15 1 20 0.10 2 0 0 0 0 0 2 0 0 0

Generated: 04/24/2015 at 10:45 AM