ID:

dsi_30451

 Coordinate:

3r:19354817-19354999 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.3 -10.9 -10.9

Flybase annnotation

exon [3r_19355000_19355195_-]; CDS [3r_19355000_19355195_-]; exon [3r_19354715_19354816_-]; CDS [3r_19354715_19354816_-]; intron [3r_19354817_19354999_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAATTATCCTTCTGTTGGTTGCACTCTCTTTGGGTTGTTTTGGTTTACCTTTCTCACGTTCTGTTCGATTCGGTTGATGGTTTTCCATTTTTCGGAGTGGCTTACACGGTTATGTTGTTCTCCTCTCTTCCTGCACACTAATACCCGGATATCTGGATAATCTGGGATATGCTGCACAGTCATTAGCGATACGTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
************************************************************************************************************************************************.......................(((((((........(((...............))).....)))))))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M023
head
 GSM343915
embryo
................................................................................................................................................TTCGGAGTGGCTTACACGGTT...................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................................TCTTTTGGTTGTTTTGGTTTA...................................................................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATACGTATGAGCGGTTGGACGC................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGCACAGTCATTAGCGATACGTATG................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..ATCTGAAACGACTGGCCCTGCAGTA................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................ACTAATACCCGGATATCTGGATAAT.................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TCTCACGTTCTGTTCGATTCG............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................TCCTGCACACTAATACCCGGATATCTGG......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTTACCTTTCTCACGTTCTG...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................AGCAGTTGGACGCCATTGTGG........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TACGTATGAGCGGTTGGACGC................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CGGTTGGACGCCATTGTGGCC......... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................TCATTAGCGATACGTGTGAGCAGTTGGA...................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATACCCGGATATCTGGAT....................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................CATAAGCAGTTGGACGCC.................. 18 2 4 0.50 2 0 0 0 0 0 0 0 2 0
.............................................................CGTTATATTGGTTGCACTCTCT........................................................................................................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................TTTCGGTTGATGGTTT.................................................................................................................................................. 16 1 8 0.13 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................TTTTTCGAAGTGGCT............................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0
..................................................................TGTTGGTTGAACTCT.......................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0
....CTGAACCGACGGGCCC....................................................................................................................................................................................................................................................................... 16 2 14 0.07 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GATAGACTTTGCTGACCGGGACGTCATGCACTTCCTCCACAGGTTGAGTTCATGCTTAATAGGAAGACAACCAACGTGAGAGAAACCCAACAAAACCAAATGGAAAGAGTGCAAGACAAGCTAAGCCAACTACCAAAAGGTAAAAAGCCTCACCGAATGTGCCAATACAACAAGAGGAGAGAAGGACGTGTGATTATGGGCCTATAGACCTATTAGACCCTATACGACGTGTCAGTAATCGCTATGCATACTCGTCAACCTGCGGTAACACCGGACGAAAGGG
********************************************************************.......................(((((((........(((...............))).....)))))))************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
.......................................................................................................AAAAAGTGCAAGACAAGCTAAT.............................................................................................................................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGTGTCAGTAATCGCTATGCATACTCG............................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................CCTAAACGACTTGTCAGTAA............................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0
....GACTTTGCTGACCGGGACGTC.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AGTGCAAGACAAGCTA................................................................................................................................................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................TTAATAGGAAGACAACCA.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................AAGCTAAGCCAACTACCAAAA................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTCAGTGATCGCTATGCATA................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................CAGGTTGAGTTCATGCTTAAT............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................AGAGGTTGACTTCATGCT................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0
...................................................ATGCTTAAGAGGAAG......................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................ATGTGTCAGGAATCGC......................................... 16 2 13 0.15 2 0 0 0 0 0 0 2 0
.................................................................................................AAAGGGAAAGAGCTCAAGACA..................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................CAATGTGTCAGGAATCGC......................................... 18 3 20 0.10 2 0 0 0 0 0 0 1 1
........................................................................................................................................................................................................................ACCCTATACGAGGTG.................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CTATAGAACTATTAG................................................................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0
..................................................................CCAACCAAGGTGAGAGA........................................................................................................................................................................................................ 17 2 13 0.08 1 0 0 1 0 0 0 0 0
...AAATTTTGCTGACCGGG....................................................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GACCCTATACGAGGTCTTA................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19354767-19355049 - dsi_30451 CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAATTAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACC----CGGATATCTGGATAA-----------TCTGGGATATGCTGCACAGTCATTAGCGATACGTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
droSec2 scaffold_0:20159063-20159345 - CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAAATAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATATC----CGGATATCTGGATAA-----------TCTGGGATTTGCTGCACAGTCATTAGCGATACGTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
dm3 chr3R:19817548-19817818 - CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAATTAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACT----------------TCTGGATAA-----------TCTGGGATATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
droEre2 scaffold_4820:8239400-8239682 + CTATCTGAAACGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTCT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACT----CGGATATCTGGATAA-----------TCTGGGTTATGCGGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
droYak3 3R:26683937-26684219 + CTATCTGAAACGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTCT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACC----CGGATATCTGGATAA-----------TCTGGGCTATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCC
droEug1 scf7180000409798:576095-576383 + CTATTTGAAACGGCTGGCCTTGCAATACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTC------------CCTTT----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ATCTTT--TCTCAC----GT-TCTGTTCAA----------TTCGATTCGGTTGATGGTT------T------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-CGTT-TGTTCTACTCTCTCCCTG--------------------------------------C------ACACTAATCCT----GGGATATCTGGATAA-----------CCTGGGTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCTATTGTGGCCTGCTTCCCC
droBia1 scf7180000302136:158007-158293 - CTTCCTGAAACGATTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACCTC------------CCTTC----CGTTCGGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTCGATT-----CAATTCGATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-CGTT-TGTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCCCC---CGGATATCTGGAT--------------------TACGCTGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGCTTCCCC
droTak1 scf7180000415183:15196-15464 + CTTCTTGAAACGACTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGATCCAC------------CATTC----CCTACGATTG-----------------C----ACACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----A-----------------------------------------------------TGGTT-----TCGTTTTCCCA-ATTTTCTCTGGAGT---GGCTTACACGGTTA-CGTT-TGTTCTCCTCTTCTCCTCCT-CCTG-------------------------------C----ACACACTAATCTTG---CGGATTTTTGGATAA-----------TGT----GACGC--CACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGCTTCCCC
droEle1 scf7180000491008:116252-116549 - CTATCTGAAGAGACTGGCCTTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTT------------CCTTC----TGTT-GGTTG-----------------C---TGCACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----CCCT------TCAC----GT-TCTGTTTGATTCGATTTGATTCGATTCGGTTGATGGTT-----TC------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCTC----TGGATATCTGGATAA-----------TCTGGGTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTCCCC
droRho1 scf7180000779169:83222-83505 + TTATCTCAAGCGTCTGGCCTTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT-----TCAC----GT-TCTGTTTGATT----------CAATTCGGTTGATGGTT-----TC------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCTC----TGGATACCTGGATAA-------------TGGGTAATGCTGCGCAGTTATAAGCGATACCTATGAGCAGTTGGACGCAATTGTGGCCTGCTTTCCC
droFic1 scf7180000453800:1997694-1997978 - CTATCTGAAGCGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTC------------CCTTT----CGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT-----TCAC----GT-TCTGTTCGA----------CTCGATTCGGTTGATGGTT-----TC------CCAATTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAACACA----CGGATATCTGGATAA-----------T--GGTTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGTTTCCCC
droKik1 scf7180000302778:211807-212089 - CTATCTGAAGCGACTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTATGCC----------------CCCTC----TGTT-GGTTG-----------------C----GCACTCTCTTTG-------------------GGTT-GTT--------------TTTTGGTTT-----ACCTT---TCACAC----GTTTCTGTTT---------------GATTCGGTTAACGGTT-----TT----CCCCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTTATATTCTACTCTCTTCCTGCTACCTG-------------------------------C---TACCCACTAATCCT----CGGAA--TTGGA----------------------ACGCTGCACAGTCATAAGCGACACCTACGAACAATTGGACGCCATTGTGGCCTGCTTCCCG
droAna3 scaffold_13340:7741876-7742165 + CTACCTTAAGCGTTTGGCTCTCCAATACGTCAAGGAGGTGTCCAACTCAAGTACGCTCC--AATCAGTTTATT--TTC----TGTT-GGTTG-----------------------CACTTTCTTTG-------------------GGCT-C----------------TTTCTTTTT-----CTCCTTTATTTTAC----AT-TTTGTTC---------------GGTTCGGTTCACGGTT-----TT------CCA-AGTTTC---GGAGT---GGCTTA--CGGCTA-TATT--GTTTTACCTTTTTCACGC---CTG-------------------------------T-----CCCACTAATTAC----TGGAC--TTGGAT--------------CTGGTTAATGATGC--AGTCATTAGCGATACTTACGAGCAGCTGGACGCCATTGTGGCATGCTTCCCC
droBip1 scf7180000396708:1107106-1107398 - CTACCTAAAGCGTCTGGCCCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTACGCTCC--AATCAGTTTATT--TTC----TGTT-GGTTG-----------------------CACTTTCTTTG-------------------GGCT-G----------------TTTCGGTTT-----CTCCTTTATTTTAC----AT-TTTGTTC---------------GGTTCGGTTCACGGTT-----TT------CCA-AGTTTC---GGAGT---GGCTTA--CGGCTA-TGTT--GTTTTACTTTTTTCACGC---CTGTC---------------------------C------GCCCACTAATAAC----TGCA--TTTGGAT--------------CTGGTTAATGATGC--AGTTATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCATGCTTCCCC
dp5 2:14325322-14325638 - CTATCTCAAGCGTCTGGCTCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTATGCCCA--TGT-GG--------TTC----TGTT-GGTTG-----------------CAGTTGCACTCTCTTTG-------------------GGTT-G----------------TTTTTGTTTTGGCTATCTT---T-TTAC----GT-TCTACAT-ATTCACTGTCATTCGGTTCGGTTCTC-------TGTT------CCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTT--CTTCTCCTCTTTTCCTGC---CT-------------------------------------ACACACTAATCGT----TGACA--ATGGAACCCAATGTAATGGCAATGGTAACGATGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGTTTCCCC
droPer2 scaffold_0:6106498-6106813 + CTATCTCAAGCGTCTGGCTCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTATGCCCA--TGT-GG--------TTC----TGTT-GGTTG-----------------C-GTTGCACTCTCTTTG-------------------GGTT-G----------------TTTTTGTTTTGGCTATCTT---T-TTAC----GT-TCTACAT-ATTCACTGTCATTCGGTTCGGTTCTC-------TGTT------CCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTT--CTTCTCCTCTTTTCCTGC---CT-------------------------------------ACACACTAATCGT----TGGCA--ATGGAACCCAATGTAATGGCAATGGTAACGATGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGTTTCCCC
droWil2 scf2_1100000004902:1069316-1069604 + TTATTTGAAACGCCTGGCGCTGCAATACGTCAAGGAGGTTTCCAATTCAAGTATGCCCA--TCC-GG--------TTTCCATTTTT-GGTTG-----------------------CACT--CTTTG-------------------GGTTTA----------------TTTTTGTTTTGGTTA-------------------------------------------TTTCGGTTGA--GTTCTATATT--------G-GTTTTT---GGAGTGGTGGCTTA--CGGTTT-TGTT--ATACTTCTATCTCTCCAA---CCAAA---------------------------CGCACACAAAAACTAATCGC----TGGCA--CTGGATAA--------TGTTTGCGTTGAATGTGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTCGCATGCTTCCCC
droVir3 scaffold_13047:18552388-18552717 - dvi_17537 CTACTTGAAGCGTCTGGCCTTGCAATATGTTAAGGAGGTGTCCAACTCAAGTATGCCCG--CATC-G--------TCC----------GTTGCAATTTTTGTTTGGTTGCAGTTGCACTGCCTTTC------CTTTATTTTC-TTCGTT-G----------------TTTTGCACT-----ATTTA---TCTGGT----TA-TCTGTTTAATG-----CCGCTGGGTTCG-------GTTCTGTA----------C-AGTTTT---GGCGT---GGCTTA--CGGTTT-CGTT--CTCTTCCTATCCCTCTGC---CTGCC---------------------------C-TGCCCACACACTAACTGC----TGGAAA--TGGACAACAA--------TATTGGTAACGGAGCACAGTTATAAGCGATACTTACGAGCAGCTGGACGCCATTGTGGCCTGCTTTCCC
droMoj3 scaffold_6540:7097064-7097385 - CTACTTGAAACGTCTTGCTTTACAATATGTTAAGGAGGTGTCCAACTCAAGTATGCTGG--GGCC-----------CC----------ATTGTACATCTTGTTTGGTTGCAGTTGCA------TTG--TTTCTTTTATT-------ATG-GTTTTGCACT--ATTTAAC-T------GGTTATCTG---T-TTGTTGCCGA-TGCCT---------------TCGGTTCGGTTAAA-------T--T--------C-TGTTTT---GGCGT---GGCTTA--CGGTTT-CGTT--CTCTTCCTATCTCTTTGC---CTG-------------------------------CACACACACACTAACCGT----TTGCG--ATGGACAACAA--------TATTGGTAACGGAGCACAGTTATAAGCGACACTTACGAACAGCTGGACGCCATTGTCGCCTGCTTTCCT
droGri2 scaffold_15074:6146795-6147165 + TTATTTGAAGCGTCTGGCCCTGCAATATGTCAAGGAGGTGTCAAATTCAAGTATACTCG--TGCCAG---------CG----------ATTGCAATTGAAAATTGGTTACAGT-----TGTATTTGCCTTCTTTTTGTTTACATTGGTT-GTTTTTTATTTGATTTATC-TGGTT------ATCTG---T-TTACTGTCG-----TT---------------TCGGTTCGATTCAG-------TA----------C-ATTTTT---GGCCT---GGCTTA--CGGTTTCCGTT--CTCTTCCTATCTCTCTGC---CTACATACACACCTATACACAAAACACACACACACACACGCACACTAATCGCGAACTGCGA--ACGGACGACA-----ATGGTAATGGTTACGGAGCACAGTTATAAGCGATACTTACGAGCAACTGGACGCCATTGTGGCCTGCTTCCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAATTAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACC----CGGATATCTGGATAA-----------TCTGGGATATGCTGCACAGTCATTAGCGATACGTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................TTC---GGAGT---GGCTTACACGGTT....................................................................................................................................................................................2114.00400000000000004000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAGTCATTAGCGATACGTATG................................2511.00100000000001000000
..ATCTGAAACGACTGGCCCTGCAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................ACTAATACC----CGGATATCTGGATAA-----------T....................................................................2511.00100000001000000000
.............................................................................................................................................................................................TCTCAC----GT-TCTGTTC---------------GATTCG.............................................................................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................TCCTG--------------------------------------C------ACACTAATACC----CGGATATCTGG....................................................................................2811.00100000001000000000
.............................................................................................................................................................................TTT-----ACCTT---TCTCAC----GT-TCTG.....................................................................................................................................................................................................................................................................2011.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGACGCCATTGTGG...........2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................ATACC----CGGATATCTGGAT..................................................................................1811.00100000010000000000
droSec2
CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAAATAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATATC----CGGATATCTGGATAA-----------TCTGGGATTTGCTGCACAGTCATTAGCGATACGTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................CGGTTGATGGTT-----TT------CCA-TTTT..............................................................................................................................................................................................................2111.0011000
....................................................ACGAAATAT------------CCTTC----TGTT-GGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................................................................TGGTT-----TT------CCA-TTTTTC---GGAGT---GGCT.............................................................................................................................................................................................2511.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAGCGATACGTATGAGCAGTTGGAC.....................2811.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCAGTTGGACGCCATTGTGGCC.........2711.0011000
dm3
CTATCTGAAACGACTGGCCCTGCAGTACGTGAAGGAGGTGTCCAACTCAAGTACGAATTAT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACT----------------TCTGGATAA-----------TCTGGGATATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................CCCTGCAGTACGTGAAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TCAC----GT-TCTGTTC---------------GATTCGGT...........................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATTAGCGATACCTATGAGC.............................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATACCTATGAGCAGTTGGACGC...................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGATACCTATGAGCAGTTGGAC.....................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................TTTC---GGAGT---GGCTTACACGGT.....................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CTGTTC---------------GATTCGGTTGATGGT....................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GATAA-----------TCTGGGATATGCTGCACA...................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CACTCTCTTTG-------------------GGTT-G----------------TTTTGGT.....................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
...................CTGCAGTACGTGAAGGAGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTGCAGTACGTGAAGGAGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTGCAGTACGTGAAGGAGGTGTCCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGTTGGACGCCATTGTGGCCTGC......2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCAGTTGGACGCCATTGTGGCC.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAGTTGGACGCCATTGTGGCCTGC......2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTCATTAGCGATACCTATG................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGATACCTATGAGCAGTTGGAC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................GTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTT........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTCTCCTCTCTTCCTG--------------------------------------C------ACACT----------------TCTGGA...................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................A-----------TCTGGGATATGCTGCACAGTCATTAGC..........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CTTACACGGTTA-TGTT--GTTCTCCT....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACGTGAAGGAGGTGTCCAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGGATAA-----------TCTGGGATATG..........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T----------------TCTGGATAA-----------TCTGGGATATGCTGC......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GATAA-----------TCTGGGATATGCTGCACAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTC---------------GATTCGGTTGATGGTT-----TT------CCA-T.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................AGGTGTCCAACTCAAGTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CTGTTC---------------GATTCGGTTGATGGTT-----..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................TGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCT.............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................T-TCTGTTC---------------GATTCGGTTGATGGT....................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGTTGGACGCCATTGT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGAAACGACTGGCCCTGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACGCCATTGTGGCCTG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................C----GT-TCTGTTC---------------GATTCGGTTGATG......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................GGAGGTGTCCAACTCAAGTACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCTGGATAA-----------TCTGGGATATGCTGCACAG..................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTAGCGATACCTATGAG..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTCTCCTCTCTTCCTG--------------------------------------C------ACACT----------------TCT......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................T------CCA-TTTTTC---GGAGT---GGCTTACACGGT.....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TCAC----GT-TCTGTTC---------------GATTCGGTTGATGGT....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATACCTATGAGCAGTTGGACGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGATACCTATGAGCAGTTGGACGCCA.................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GG...............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................TCTGTTC---------------GATTCGGTTGATGG.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTTTGGTTT-----ACCTT---TCTCAC----GT-TCT......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TGGTTT-----ACCTT---TCTCAC----GT-TC.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TTGGTTT-----ACCTT---TCTCAC----GT-T........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTCATTAGCGATACCTATGAG..............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTACGTGAAGGAGGTGTCCAACTCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTC---GGAGT---GGCTTACACGGTTA-TGT...............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGAAACGACTGGCCCTGCAGTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGATACCTATGAGCAGTTGGACGCCA.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTCATTAGCGATACCTATGAGC.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTTG-------------------GGTT-G----------------TTTTGGTTT-----ACC...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................A-TTTTTC---GGAGT---GGCTTACAC........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTCATTAGCGATACCTATGAGCA............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGG......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................T---TCTCAC----GT-TCTGTTC---------------GATTCGG............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CTGGCCCTGCAGTACGTGAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................CCCTGCAGTACGTGAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GTTC---------------GATTCGGTTGATGGTT-----TT------C.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CACGGTTA-TGTT--GTTCTCCTC...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTAGCGATACCTATGAGCAGTTGGA......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGATACCTATGAGCAGTT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCAGTACGTGAAGGAGGTGTCCAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTTGGTTT-----ACCTT---TCTCAC----GT-T........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...................CTGCAGTACGTGAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGACGCCATTGTGGCCTGC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................TACGAATTAT------------CCTTC----TGTT-GGTTG-----------------------CAC.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGTTGGACGCCATTGTGGCCT........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................G-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGG......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGAGGTGTCCAACTCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................C----GT-TCTGTTC---------------GATTCGGTTGATGGT....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................TGGATAA-----------TCTGGGATATGCTGC......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTCTCCTCTCTTCCTG--------------------------------------C------ACACT----------------TCTGG....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGC..............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................TTC---------------GATTCGGTTGATGT.....................................................................................................................................................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGAGGTGTCCAACTCACT................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTT-----ACCTT---TCTCAC----GT-TCGCG....................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTATCTGAAACGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTCT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACT----CGGATATCTGGATAA-----------TCTGGGTTATGCGGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................GT-TCTGTTC---------------GATTCGGTTGATGG.....................................................................................................................................................................................................................................2311.0011000000
CTATCTGAAACGGCTGGCCCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
CTATCTGAAACGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTCT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTC---------------GATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTTCCTG--------------------------------------C------ACACTAATACC----CGGATATCTGGATAA-----------TCTGGGCTATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................TACGTCAAGGAGGTGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
droEug1
CTATTTGAAACGGCTGGCCTTGCAATACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTC------------CCTTT----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ATCTTT--TCTCAC----GT-TCTGTTCAA----------TTCGATTCGGTTGATGGTT------T------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-CGTT-TGTTCTACTCTCTCCCTG--------------------------------------C------ACACTAATCCT----GGGATATCTGGATAA-----------CCTGGGTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCTATTGTGGCCTGCTTCCCCSizeHit CountTotal NormTotal
No Reads
droBia1
CTTCCTGAAACGATTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACCTC------------CCTTC----CGTTCGGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT---TCTCAC----GT-TCTGTTCGATT-----CAATTCGATTCGGTTGATGGTT-----TT------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-CGTT-TGTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCCCC---CGGATATCTGGAT--------------------TACGCTGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGCTTCCCCSizeHit CountTotal NormTotal
No Reads
droTak1
CTTCTTGAAACGACTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGATCCAC------------CATTC----CCTACGATTG-----------------C----ACACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----A-----------------------------------------------------TGGTT-----TCGTTTTCCCA-ATTTTCTCTGGAGT---GGCTTACACGGTTA-CGTT-TGTTCTCCTCTTCTCCTCCT-CCTG-------------------------------C----ACACACTAATCTTG---CGGATTTTTGGATAA-----------TGT----GACGC--CACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGCTTCCCCSizeHit CountTotal NormTotal
No Reads
droEle1
CTATCTGAAGAGACTGGCCTTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTT------------CCTTC----TGTT-GGTTG-----------------C---TGCACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----CCCT------TCAC----GT-TCTGTTTGATTCGATTTGATTCGATTCGGTTGATGGTT-----TC------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCTC----TGGATATCTGGATAA-----------TCTGGGTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGCTTCCCCSizeHit CountTotal NormTotal
No Reads
droRho1
TTATCTCAAGCGTCTGGCCTTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTT------------CCTTC----TGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT-----TCAC----GT-TCTGTTTGATT----------CAATTCGGTTGATGGTT-----TC------CCA-TTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAATCTC----TGGATACCTGGATAA-------------TGGGTAATGCTGCGCAGTTATAAGCGATACCTATGAGCAGTTGGACGCAATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotal
No Reads
droFic1
CTATCTGAAGCGGCTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTACGAACTTC------------CCTTT----CGTT-GGTTG-----------------------CACTCTCTTTG-------------------GGTT-G----------------TTTTGGTTT-----ACCTT-----TCAC----GT-TCTGTTCGA----------CTCGATTCGGTTGATGGTT-----TC------CCAATTTTTC---GGAGT---GGCTTACACGGTTA-TGTT--GTTCTCCTCTCTCCCTG--------------------------------------C------ACACTAACACA----CGGATATCTGGATAA-----------T--GGTTAATGCTGCACAGTCATTAGCGATACCTATGAGCAGTTGGACGCCATTGTGGCCTGTTTCCCCSizeHit CountTotal NormTotal
No Reads
droKik1
CTATCTGAAGCGACTGGCCCTGCAGTACGTCAAGGAGGTGTCCAACTCAAGTATGCC----------------CCCTC----TGTT-GGTTG-----------------C----GCACTCTCTTTG-------------------GGTT-GTT--------------TTTTGGTTT-----ACCTT---TCACAC----GTTTCTGTTT---------------GATTCGGTTAACGGTT-----TT----CCCCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTTATATTCTACTCTCTTCCTGCTACCTG-------------------------------C---TACCCACTAATCCT----CGGAA--TTGGA----------------------ACGCTGCACAGTCATAAGCGACACCTACGAACAATTGGACGCCATTGTGGCCTGCTTCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
CTACCTTAAGCGTTTGGCTCTCCAATACGTCAAGGAGGTGTCCAACTCAAGTACGCTCC--AATCAGTTTATT--TTC----TGTT-GGTTG-----------------------CACTTTCTTTG-------------------GGCT-C----------------TTTCTTTTT-----CTCCTTTATTTTAC----AT-TTTGTTC---------------GGTTCGGTTCACGGTT-----TT------CCA-AGTTTC---GGAGT---GGCTTA--CGGCTA-TATT--GTTTTACCTTTTTCACGC---CTG-------------------------------T-----CCCACTAATTAC----TGGAC--TTGGAT--------------CTGGTTAATGATGC--AGTCATTAGCGATACTTACGAGCAGCTGGACGCCATTGTGGCATGCTTCCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................ACGGTT-----TT------CCA-AGTTTC---GGAGT---GGC..............................................................................................................................................................................................2512.002000011
......................................................................................................................................................................................................................................................T------CCA-AGTTTC---GGAGT---GGCTTA--CGGC.....................................................................................................................................................................................2512.002000110
.............................................................................................................................................................................................................................................................................................................................TG-------------------------------T-----CCCACTAATTAC----TGGAC--TTGGAT--------------C...................................................................2711.001100000
.......................................GTCCAACTCAAGTACGCTCC--A.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................TT-GGTTG-----------------------CACTTTCTTTG-------------------GGCT-C----------------TTTCT.......................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................TT------CCA-AGTTTC---GGAGT---GGCTTA--CGGC.....................................................................................................................................................................................2611.001100000
..................................................................GTTTATT--TTC----TGTT-GGTTG-----------------------CA..............................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........GTTTGGCTCTCCAATACGTCAAGGAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
CTACCTAAAGCGTCTGGCCCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTACGCTCC--AATCAGTTTATT--TTC----TGTT-GGTTG-----------------------CACTTTCTTTG-------------------GGCT-G----------------TTTCGGTTT-----CTCCTTTATTTTAC----AT-TTTGTTC---------------GGTTCGGTTCACGGTT-----TT------CCA-AGTTTC---GGAGT---GGCTTA--CGGCTA-TGTT--GTTTTACTTTTTTCACGC---CTGTC---------------------------C------GCCCACTAATAAC----TGCA--TTTGGAT--------------CTGGTTAATGATGC--AGTTATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCATGCTTCCCCSizeHit CountTotal NormTotal
No Reads
dp5
CTATCTCAAGCGTCTGGCTCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTATGCCCA--TGT-GG--------TTC----TGTT-GGTTG-----------------CAGTTGCACTCTCTTTG-------------------GGTT-G----------------TTTTTGTTTTGGCTATCTT---T-TTAC----GT-TCTACAT-ATTCACTGTCATTCGGTTCGGTTCTC-------TGTT------CCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTT--CTTCTCCTCTTTTCCTGC---CT-------------------------------------ACACACTAATCGT----TGACA--ATGGAACCCAATGTAATGGCAATGGTAACGATGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGTTTCCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................T-ATTCACTGTCATTCGGTTCGGTTC.........................................................................................................................................................................................................................................2511.0010000000010
......................................................................................................................................................................................................................................................T------CCA-AGTTTC---GGAGT---GGCTTA--CG.......................................................................................................................................................................................2311.0010000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTATGAGCAGCTGGACGC...................2111.0010100000000
........AGCGTCTGGCTCTGCAATACGTCAAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.....................GCAATACGTCAAGGAGGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTATGAGCAGCTGGACGCCATTG..............2611.0010000000010
droPer2
CTATCTCAAGCGTCTGGCTCTGCAATACGTCAAGGAGGTGTCCAACTCAAGTATGCCCA--TGT-GG--------TTC----TGTT-GGTTG-----------------C-GTTGCACTCTCTTTG-------------------GGTT-G----------------TTTTTGTTTTGGCTATCTT---T-TTAC----GT-TCTACAT-ATTCACTGTCATTCGGTTCGGTTCTC-------TGTT------CCA-AGTTTC---GGAGT---GGCTTA--CGGTTA-TGTT--CTTCTCCTCTTTTCCTGC---CT-------------------------------------ACACACTAATCGT----TGGCA--ATGGAACCCAATGTAATGGCAATGGTAACGATGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTGGCCTGTTTCCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................TTTC---GGAGT---GGCTTA--CGGTTA-TG................................................................................................................................................................................2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAGCTGGACGCCATTGTGGCC.........2611.001010000
droWil2
TTATTTGAAACGCCTGGCGCTGCAATACGTCAAGGAGGTTTCCAATTCAAGTATGCCCA--TCC-GG--------TTTCCATTTTT-GGTTG-----------------------CACT--CTTTG-------------------GGTTTA----------------TTTTTGTTTTGGTTA-------------------------------------------TTTCGGTTGA--GTTCTATATT--------G-GTTTTT---GGAGTGGTGGCTTA--CGGTTT-TGTT--ATACTTCTATCTCTCCAA---CCAAA---------------------------CGCACACAAAAACTAATCGC----TGGCA--CTGGATAA--------TGTTTGCGTTGAATGTGCACAGTCATTAGCGATACCTATGAGCAGCTGGACGCCATTGTCGCATGCTTCCCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTACTTGAAGCGTCTGGCCTTGCAATATGTTAAGGAGGTGTCCAACTCAAGTATGCCCG--CATC-G--------TCC----------GTTGCAATTTTTGTTTGGTTGCAGTTGCACTGCCTTTC------CTTTATTTTC-TTCGTT-G----------------TTTTGCACT-----ATTTA---TCTGGT----TA-TCTGTTTAATG-----CCGCTGGGTTCG-------GTTCTGTA----------C-AGTTTT---GGCGT---GGCTTA--CGGTTT-CGTT--CTCTTCCTATCCCTCTGC---CTGCC---------------------------C-TGCCCACACACTAACTGC----TGGAAA--TGGACAACAA--------TATTGGTAACGGAGCACAGTTATAAGCGATACTTACGAGCAGCTGGACGCCATTGTGGCCTGCTTTCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................G--CATC-G--------TCC----------GTTGCAATTTTTG..............................................................................................................................................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTAACGGAGCACAG..................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................CAAGTATGCCCG--CATC-G--------TCC----------...........................................................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TA----------C-AGTTTT---GGCGT---GGCTTA--CGG......................................................................................................................................................................................2311.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................CGCTGGGTTCG-------GTTCTGTA----------C-A.................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................TTGCACT-----ATTTA---TCTGGT----TA-TCT......................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAAA--TGGACAACAA--------TATTGGTAACGGA........................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.TACTTGAAGCGTCTGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAGCGATACTTACGAGCAGCTGGA......................2711.001000000000000000000000000000000100000000000000000000000000000000
droMoj3
CTACTTGAAACGTCTTGCTTTACAATATGTTAAGGAGGTGTCCAACTCAAGTATGCTGG--GGCC-----------CC----------ATTGTACATCTTGTTTGGTTGCAGTTGCA------TTG--TTTCTTTTATT-------ATG-GTTTTGCACT--ATTTAAC-T------GGTTATCTG---T-TTGTTGCCGA-TGCCT---------------TCGGTTCGGTTAAA-------T--T--------C-TGTTTT---GGCGT---GGCTTA--CGGTTT-CGTT--CTCTTCCTATCTCTTTGC---CTG-------------------------------CACACACACACTAACCGT----TTGCG--ATGGACAACAA--------TATTGGTAACGGAGCACAGTTATAAGCGACACTTACGAACAGCTGGACGCCATTGTCGCCTGCTTTCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTATTTGAAGCGTCTGGCCCTGCAATATGTCAAGGAGGTGTCAAATTCAAGTATACTCG--TGCCAG---------CG----------ATTGCAATTGAAAATTGGTTACAGT-----TGTATTTGCCTTCTTTTTGTTTACATTGGTT-GTTTTTTATTTGATTTATC-TGGTT------ATCTG---T-TTACTGTCG-----TT---------------TCGGTTCGATTCAG-------TA----------C-ATTTTT---GGCCT---GGCTTA--CGGTTTCCGTT--CTCTTCCTATCTCTCTGC---CTACATACACACCTATACACAAAACACACACACACACACGCACACTAATCGCGAACTGCGA--ACGGACGACA-----ATGGTAATGGTTACGGAGCACAGTTATAAGCGATACTTACGAGCAACTGGACGCCATTGTGGCCTGCTTCCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:35 PM