ID:

dsi_30450

 Coordinate:

2r:5817801-5817950 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.6 -13.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCGCGGTCTCATCTCTCACTGTTATGGTCCCTATTTTGGCCCGTCCAGTTTTTGTTTTCGGTTCCACTTCCGGTGGCGCACGGCCACATATTACCTCAGAGGCTATTCTTCGGCGTTCGATTCGCCTTGCATCACCTCCATTATTCATACTCTCTCAATCGCGAGCCACCAACTGATGCTTGTAATTCTTGTGTTGCAGGACGCAGGCAGTACAGACAGGTTTTGTAGGAGAGGGTCCCCTGTTCCCGA
*****************************************************************************************............(((........(((...(((((..................................)))))...)))..........)))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.........................................................................................................................................................................................................................CAGGTTTTGTAGGAGAGGGTCCCCTG....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................TATTACCTCAGAGGCTATTCTTCGGC....................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................TGGCCCGTCCAGTTTTTGTTTTCGG............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................TCAATCGCGAGCCACCAACTGATGCT..................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGGTTTTGTAGGAGAGGGTCCCCTGT...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................TATTACCTCAGAGGCTATTCTTCGGCG...................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AGGTTTTGTAGGAGAGGGTCCCCTGT...... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TGATGCTTGTAATTCTTGTGTTGCAGGA................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................CAGGCAGCACATACAGGTT........................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0
...................................................................................................................GTTCGATTCGCCTCGC....................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................ACTTATGATTGTAATTATTGTG........................................................ 22 3 6 0.17 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................ACCTGATGGTTGTAATTGTT........................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0
..................................................................................................................CGTTCGAATCGCCTCGC....................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................................................TCGGCGTTCGATTCC............................................................................................................................. 15 1 13 0.08 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................GAGTCCCTAACTGATGCTT.................................................................... 19 3 14 0.07 1 0 0 0 0 0 1 0 0
....................................................................................................................................................TACTGTCTCAACCGCG...................................................................................... 16 2 16 0.06 1 0 0 1 0 0 0 0 0
...................................................TATGTTTTCGGTCCCA....................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................TTGTAGGAGAGCGTTC........... 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGCGCCAGAGTAGAGAGTGACAATACCAGGGATAAAACCGGGCAGGTCAAAAACAAAAGCCAAGGTGAAGGCCACCGCGTGCCGGTGTATAATGGAGTCTCCGATAAGAAGCCGCAAGCTAAGCGGAACGTAGTGGAGGTAATAAGTATGAGAGAGTTAGCGCTCGGTGGTTGACTACGAACATTAAGAACACAACGTCCTGCGTCCGTCATGTCTGTCCAAAACATCCTCTCCCAGGGGACAAGGGCT
*********************************************************************............(((........(((...(((((..................................)))))...)))..........)))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................................................................CTGAACGTATTGGATGTAATAAG....................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
............................................................................................................................CGGACCCTTGTGGAGGTAATA......................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0
................................................................................................AGTGTCCGAAAAGAAGCCG....................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0
...............................................................AGGTGAGGACCACCGCGAGCCG..................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0
............................................................................................................................CGGAACGTTATGGATGTAATA......................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CCGTCATGGCTGTCTTAAAC........................ 20 3 6 0.17 1 0 0 0 1 0 0
.......................................................................................................................................GGAGGTGATGAGTATGA.................................................................................................. 17 2 9 0.11 1 0 1 0 0 0 0
............................................................................................................................CGCAACCTAGTGGAGGCAAT.......................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0
................AGTGACAAGACCAAGGAT........................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 1 0
..............ATAGTGACAAGACCAAGGAT........................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 1
...........................................................GCCAAGGTGACGGCC................................................................................................................................................................................ 15 1 12 0.08 1 0 1 0 0 0 0
.................................................AAAAATAAGAGCCAAGGT....................................................................................................................................................................................... 18 2 19 0.05 1 0 1 0 0 0 0

Generated: 04/24/2015 at 12:29 AM