dsi_30442

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-

TGCGAACACGAAATTTCATACTTTTTCTCATTTTATTCAGAAAAATTACAAAATTTTGTGTTCGCATTCCCATAAGCTGTGTAACGGGCATCTGATAGTCGACTATATCATTCTCTTTATTTTTGTTGTAGTATCTCACTTAATTTAAGAAAAGTCCTATTTTGTAACAATATTTACTAATCATCTGTTTTTCTTTTCAGTATAATCTCCTTCCTCGTGGAGTATTGTCTTTAAAAGTTTTACAAGAGCT ************************************************(((((..(((.(((.(((..((...(((........)))...))..))))))(((((.((.............)).))))).....)))..)))))((((((((.........((((......))))..........)))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head	M053 female body	SRR618934 dsim w501 ovaries	M024 male body
......................................................................................................................................................................................................................................TTAAAAGTTTTACAAGAGC.	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATTGTCTTTAAAAGTTTTATAAGA...	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATTGTCTTTAAAAGTTTTACAAGA...	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................TATAATCTCCTTCCTCGTGG..............................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................................GATAGTCGGCTAGATCATCC.........................................................................................................................................	20	3	3	0.67	2	0	0	0	0	0	1	1	0	0
..........................................................................................................................................................................................................................GGAGTATGGTCTTTAAAA..............	18	1	2	0.50	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTGGGGTATTGTCTTTAAAA..............	20	2	3	0.33	1	0	0	0	1	0	0	0	0	0
.............................................................................TGAGTAACGGGCATTTGATAGTTGACT..................................................................................................................................................	27	3	4	0.25	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................ATTTACTAATCATCTGT..............................................................	17	0	4	0.25	1	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................TTAATCATCTGTTTTTCTTTTCAGTA................................................	26	1	4	0.25	1	0	0	0	1	0	0	0	0	0
.............................................................................................GATAGTCGGCTAGATCATC..........................................................................................................................................	19	3	16	0.19	3	0	0	0	0	0	0	0	0	3
.............................................................................TGAGTGACAGGCATCTGATAGTCGACT..................................................................................................................................................	27	3	6	0.17	1	0	0	0	0	1	0	0	0	0
........................................................................................TAGCTGAAAGTCGACTATATCA............................................................................................................................................	22	3	7	0.14	1	0	0	0	1	0	0	0	0	0
.........................................................GTGTTCGAATCCCCATA................................................................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0	0
.............................................................................TGAGTAACGGGCATTTGATAGTCGTCT..................................................................................................................................................	27	3	9	0.11	1	0	0	0	0	1	0	0	0	0
..............................................................................................ATAGTCGGCTAGATCATCC.........................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................CTAATTATCTGTTTCTCT........................................................	18	2	19	0.05	1	0	0	0	1	0	0	0	0	0
.................................................................................TAACGTGCATCTGATAGTCGTAT..................................................................................................................................................	23	3	20	0.05	1	0	0	0	0	0	0	0	1	0

ACGCTTGTGCTTTAAAGTATGAAAAAGAGTAAAATAAGTCTTTTTAATGTTTTAAAACACAAGCGTAAGGGTATTCGACACATTGCCCGTAGACTATCAGCTGATATAGTAAGAGAAATAAAAACAACATCATAGAGTGAATTAAATTCTTTTCAGGATAAAACATTGTTATAAATGATTAGTAGACAAAAAGAAAAGTCATATTAGAGGAAGGAGCACCTCATAACAGAAATTTTCAAAATGTTCTCGA ************************************************(((((..(((.(((.(((..((...(((........)))...))..))))))(((((.((.............)).))))).....)))..)))))((((((((.........((((......))))..........)))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	GSM343915 embryo	M023 head
...........................GGAAAAATAAGTCTTTTTACTGT........................................................................................................................................................................................................	23	3	2	2.00	4	4	0	0	0	0	0	0	0
............................................................................................................................................................................AAATGATTAGTAGACAAAAAGAAAAGT...................................................	27	0	4	1.00	4	0	1	0	2	1	0	0	0
..............................................................................................TATCAGCTGATATAGTAAGAGAAAT...................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
...........TTAAAGTATGAAAAAGA..............................................................................................................................................................................................................................	17	0	3	0.67	2	0	2	0	0	0	0	0	0
..............................AAAATAAGTCTTTTTACTGTGT......................................................................................................................................................................................................	22	2	2	0.50	1	1	0	0	0	0	0	0	0
...........TTAAAGTATGAAAAAG...............................................................................................................................................................................................................................	16	0	3	0.33	1	0	1	0	0	0	0	0	0
..........TTTAAAGTATGAAAAAG...............................................................................................................................................................................................................................	17	0	3	0.33	1	0	1	0	0	0	0	0	0
............................................................................................ACTAGCAGCTGATATA..............................................................................................................................................	16	1	3	0.33	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................TAATGATTAGTAGACAAAAAGAAAAGT...................................................	27	1	4	0.25	1	0	0	0	0	1	0	0	0
.............................................................................................CTATCAGCTGATGTA..............................................................................................................................................	15	1	8	0.25	2	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................AGAAAAAGAAAAGTCATATGAGT..........................................	23	3	5	0.20	1	1	0	0	0	0	0	0	0
.....................................................................................................TGATATAGTAAGAGA......................................................................................................................................	15	0	17	0.18	3	0	3	0	0	0	0	0	0
...............................................................................................................................................................................CGATTAGAAGACAAAAAGAA.......................................................	20	2	6	0.17	1	0	0	0	0	0	0	1	0
................................................................................................TCAGCAGTTATAGTAAGA........................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................AGTGATATGAGAGGAGGGA...................................	19	3	18	0.06	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGAAATTTTCCAAATGGT.....	18	2	20	0.05	1	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:2173692-2173941 -	dsi_30442	TGC----GAACACGAAATTTCATACTTTTTCTCATTTTA-------------------TTCA-----------------------------------------------GAAAAATTAC--------AAAATT----------TTGTGTTCGCATTCCCATAAGCTGTGTAACGGGCATCTGATAGTC---------GACTAT-------------A----TCATTCTCT---------------------------------------------------------------------------------TTA--TTT---TTGT--TGTAGTATCTCACTTA-ATTTAAGAAAA----------------------------------GT--C--CTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATCATCTGTTTTTCTTTTCAGTATAATCTCCTTCCT-CGTGGAGTATTGTCTTTAAAAGTTTTACAA-------GAGCT
droSec2	scaffold_59:55094-55343 -		TGC----GAACACGAAATTTCATACTTTTTCTCATTTTA-------------------TTCA-----------------------------------------------GAAAAATTAC--------AAAATT----------TTGTGTTCGCATTCCCACAAGCTGTGTAACGGGCATCTGATAGTC---------GACTAT-------------A----TCATTCTCT---------------------------------------------------------------------------------TTA--TTT---TCGT--TGTAGTATCTCACTTA-ATTTAAGAAAA----------------------------------GT--C--CTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATCCTTTGTTTTTCTTTTCAGTATAATCTCCTTCCT-CGTGGAGTATTGTCTTTAAAAGTTTTACAG-------GAGCT
dm3	chr2R:1129518-1129770 -		TGC----GAACGCGAAATTCTATAATTTGTC-CATTTTATTTCC---------------------------------------CAATTTTTTTCAATA------TCATAGAAAAACTAC--------ACAAGT----------TTGTGTTCGCATTCCCACTAGCTGTG-AATAGGTAGCTGATAGCC---------GACTAT-------------A----GCATTCTCT-AT------------------------------------------------------------------------------------TTTT-------TGTAGTA-------------TAAGAAAA----------------------------------GT--C--TTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATTATCTGTTTTTTATTTCAGTATAATCTCCTTCCT-CGTGGAATATTATCTTTGAAAGTTTTACAA-------GAGCT
droEre2	scaffold_4845:2628279-2628554 +		AATTTTA----------------------------TTAT------------------------------------TTTTTCCCCAATTTCTACCGATA------TTCC-AGACAATGCT--------GAAATT----------TCTCGTTCGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGACCTCGACTAT-------------G----GCATTCTCT-TGTTTTAATTTGGGAATAG-----------TATTAATGTCTTTACGCGTAAATGTAAATTCAATCTTTTCAATCTA----------------------------------------------------------------------------------------------------------------------TTGTGGCT-------------TT-AATTGTTCT-TCTTAGCATTTCTGTACAGGATAGTATCCTTTCCTAATTCGAGTTTATC---CAAAATATTCCAA------TATGGC
droYak3	3R:502016-502213 -		AAGTCT------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCGCACTTCCACTAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTCGACTAT-------------A----GCGTTCTCT-CT-------------------------------------------------------------------------------T-----GTT--TAT--TATAAAATCTTATT------------------------GCT-----TAGTAATAA-------GT--A--CTT-----------------------TATAGTCAAGGCACTCAACT---AT-ACCATT--TCTTATTGTTTTTTACTATAGTTTAAGCTCTTCCAT---TAGAACTTTGTCT--AAAAG--------------------
droEug1	scf7180000405460:7148-7210 -		TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTCAGTATAATCTCCTTCCA-CGCGGTATATTGTCGTTAAAAGTGTTACAG-------GAGCT
droBia1	scf7180000299226:291395-291527 +		TTTCT---------------------------------------------------------------------------------------------------------------------------------------------CACTCGCACTCCCCTTAGCTGAGTAATGGGTATCTGACAGTCGAGGTCTTCTACTAT----------------------TCTCT---------------------------------------------------------------------------------TTAAATTT---TCAT--TGTTGTAATTCAGTTG-----AAAAAAA----------------------------------AC--T--TTA-----------------------AACT-------------------------------GTGTGTT----T----------------------------------------------TTTAATAA-------TGATC
droTak1	scf7180000410300:15735-15951 -		TGCCAAA----------------------------AAAA----------------------------TTGACTTTT-TTCC--CA-----------TAGTGCATTCGTTAAAAAATTACGGCGGATCAAAGTTTTTATCTTCATCTCCTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTAT-------------A----GCGTTCTCT-CT-----------------------------------------------------------------------------------------------TGTTGTATTTGATTTG-ACTC-------------------------------------------------TT----------TTTTTACCCAGAATCTTGTAATA-------------ATAATTTACAAATT---TGTTTTTTTT------------------------------------------------------------CTC
droEle1	scf7180000486168:13594-13669 -		TAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTATTTCTCTTTTCAGTATAATCTTCTTCCT-CGCGGAATATTATCCTTAAAAGTTTTACAA-------GAGCT
droRho1	scf7180000777807:26619-26828 -		TTCACAT----------------------------TATG-------------------TTAA-----------------------------------------------TGCAAAGTCT--------AAAGTT----------G---------------TTTAGCTGAGTAACGGGTATCTAATAGTCGAGGCACTCGACTAT-------------A----GCGTTCTCT-CT-------------------------------------------------------------------------------T-----GTTTTTGTGCTGTGAAATGCCAGTTGCATTTCAGAAACATATTTTTAAAGACACCATCAAAACAGA-----TTTTTCTTTGGTTGGGAGCTTCGT-------------T------------------------------------------------------------------------ATTATTGTGTTTCTTATATTTACCA-------GCACT
droFic1	scf7180000453609:64395-64474 -		TATTTAA----------------------------CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTATTTTTTTCAGTATAATCTTCTTCCG-CGAGGAATATTATCTTTGAAAGTTTTACAG-------GAACT
droKik1	scf7180000302310:7292-7406 +		TTCTTGT----------------------------TTTT------------------------------------T-TTTT-------------------------------------------------------------------------------------------------------------GTTAATGTTTCGTTTAGTCATAATATAATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCTTCGTTTCAGTATAACCTTCTTCCT-CGTGGCATATTATCACTAAAAGTGTTGCAG-------GAGCT
droAna3	scaffold_13250:887593-887816 -		TTA----AAACACGAAGTTTTTTAGCTTTTCACATTTT---TGTGGCACGCATATGGATTAATAAAGATTATTATT-----------------------------------------AA--------GAA-------------------------------------------------------------------------------------------------ATTGTGTGTTTGCTAA--AGGAACGTGGGGCCACACGTCCCGGAG-ATAACAAGAATTTCCTAATATTTTCTAT-----TTTCTTAA--TTT---TCT----------TCTCCTTAA-AATCGAAAAAC----------------------------------CT--G--TTG-----------------------TTTTTTATTA----------TATAT-ATTTGCTAAATACTT--------------------------------------------------------TTTT-------TTTCT
droBip1	scf7180000395238:19626-19718 +		CATTATA----------------------------TTAA------------------------------------TTTTTGTTTC------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------TTT---TCAG--TTTTTTA--------------------------------------------------------T--C--TTA-----------------------TTTTTAAACA-------------AA-ATTTACTAGTTATTTACTTTATTTA-----------------------------------------------CTGACTTATTATAAT
dp5	Unknown_group_5:1799-2050 -		TTT----AGCCAAGGAGTTTTGTTTGTTTT----TTTTATACCCGGTAC---------------------------------------------------------------------T--------CAAAGA----------G---------------TATAGGAGTATATTGGATCTTTGGTGATCGTGATCATTTTTTGTTCCGACCCCATAAAGTATACATATTCTGTGTGTTAGTTCT--AGTTA-----------TAGTCATGTCG-AAAACGTGAATTTTAATTAAATTTTTGT-----AT----------------------------------------------------------------------------------------------------------------------T-----A------------------------TTATTATAATTCTTTTTTCAGTATACCCTACTGCCT-CGAGGAATATTATCCCTAAAAGTTTTACAA-------GAGCT
droPer2	scaffold_43:329731-329982 -		TTT----AGCCAAGGAGTTTTGTTTGTTTT----TTTTATACCCGGTAC---------------------------------------------------------------------T--------CAAAGA----------G---------------TATAGGAGTATATTCGATCTTTGGTGATCGTGATCATTTTTTGTTCCGACCCCATAAAGTATACATATTCTGTGTGTTAGTTCT--AGTTA-----------TAGTCATGTCG-AAAACGTGAATTTTAATTAAATTTTTGT-----AT----------------------------------------------------------------------------------------------------------------------T-----A------------------------TTATTATAATTCTTTTTTCAGTATACCCTACTGCCT-CGAGGAATATTATCCCTAAAAGTTTTACAA-------GAGCT
droWil2	scf2_1100000004852:605881-606007 +		ATTTTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTTTTTGATTAA-ATTTAAATAAA----------------------------------AT--C--AAA-----------------------ACTTACAACA-------------AT-ACTTGC--ATTAGCGGTGTTGTTGTTTTGTTTATCTCTTTTGCT-T------TTGTGTCTTTA------------------------
droVir3	scaffold_12875:12084897-12085073 -		TATCATA----------------------------AGTG----------------------------TTGTTTTTT-TTTC-----------------------------------------------------------------------TACCTTTAGAAACCGAGCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCCAAAATATTTTTTTCAGCA-----TCGAAATAAGTTAAATGT-----ATA-----------------------TATTGCTAAA-------------TT-ATATA---AAAATGCACTTCCTATTCCAGTATAATCTCCTTCCT-CGTGGTATATTGTCCTTGAAAGTTCTTCAA-------GAGTT
droMoj3	scaffold_6496:14735034-14735105 +		TATTAAT----------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-TATCTTTCAGTATAATCTTCTACCT-CGCGGTATATTATCCTTAAAAGTTCTGCAA-------GAGCT
droGri2	scaffold_15245:11955997-11956073 -		ATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAATTTATATTTCAGTATAATCTTCTTCCT-CGTGGTATTCTGTCCTTGAAAGTTCTTCAA-------GAGTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGC----GAACACGAAATTTCATACTTTTTCTCATTTTA-------------------TTCA-----------------------------------------------GAAAAATTAC--------AAAATT----------TTGTGTTCGCATTCCCATAAGCTGTGTAACGGGCATCTGATAGTC---------GACTAT-------------A----TCATTCTCT---------------------------------------------------------------------------------TTA--TTT---TTGT--TGTAGTATCTCACTTA-ATTTAAGAAAA----------------------------------GT--C--CTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATCATCTGTTTTTCTTTTCAGTATAATCTCCTTCCT-CGTGGAGTATTGTCTTTAAAAGTTTTACAA-------GAGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAGTTTTACAA-------GAGC.	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTCTTTAAAAGTTTTACAA-------GA...	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATCTCCTTCCT-CGTGG.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACTAATCATCTGT......................................................................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGC----GAACACGAAATTTCATACTTTTTCTCATTTTA-------------------TTCA-----------------------------------------------GAAAAATTAC--------AAAATT----------TTGTGTTCGCATTCCCACAAGCTGTGTAACGGGCATCTGATAGTC---------GACTAT-------------A----TCATTCTCT---------------------------------------------------------------------------------TTA--TTT---TCGT--TGTAGTATCTCACTTA-ATTTAAGAAAA----------------------------------GT--C--CTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATCCTTTGTTTTTCTTTTCAGTATAATCTCCTTCCT-CGTGGAGTATTGTCTTTAAAAGTTTTACAG-------GAGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAGTTTTACAG-------GA...	18	1	1.00	1	0	0	0	1

dm3

TGC----GAACGCGAAATTCTATAATTTGTC-CATTTTATTTCC---------------------------------------CAATTTTTTTCAATA------TCATAGAAAAACTAC--------ACAAGT----------TTGTGTTCGCATTCCCACTAGCTGTG-AATAGGTAGCTGATAGCC---------GACTAT-------------A----GCATTCTCT-AT------------------------------------------------------------------------------------TTTT-------TGTAGTA-------------TAAGAAAA----------------------------------GT--C--TTA-----------------------TTTTGTAACA-------------AT-ATTTACTAATTATCTGTTTTTTATTTCAGTATAATCTCCTTCCT-CGTGGAATATTATCTTTGAAAGTTTTACAA-------GAGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGTGGAATATTATCTTTGAAAGTTT.................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATCTTTGAAAGTTTTACAA-------GAGC.	27	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTTCCT-CGTGGAATATTATCTT..........................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT-CGTGGAATATTATCTTTGAAAGTTT.................	29	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCCT-CGTGGAATATTATCTTT.........................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT-CGTGGAATATTATCTTTGAAAGT...................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAATATTATCTTTGAAAGTTT.................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTTGAAAGTTTTACAA-------GAGCT	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTTGAAAGTTTTACAA-------GAGC.	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAAGTTTTACAA-------GAGC.	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGTTTTACAA-------GAGCT	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCT-CGTGGAATATTATCTTTGA.......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCCT-CGTGGAATATTATCTTTG........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAATATTATCTTTGAAAGT...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................C---------GACTAT-------------A----GCATTCTCT-AT------------------------------------------------------------------------------------...........................................................................................................................................................................................................................	19	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CC---------GACTAT-------------A----GCATTCTCT-.................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CC---------GACTAT-------------A----GCATTCTCC-.................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AATTTTA----------------------------TTAT------------------------------------TTTTTCCCCAATTTCTACCGATA------TTCC-AGACAATGCT--------GAAATT----------TCTCGTTCGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGACCTCGACTAT-------------G----GCATTCTCT-TGTTTTAATTTGGGAATAG-----------TATTAATGTCTTTACGCGTAAATGTAAATTCAATCTTTTCAATCTA----------------------------------------------------------------------------------------------------------------------TTGTGGCT-------------TT-AATTGTTCT-TCTTAGCATTTCTGTACAGGATAGTATCCTTTCCTAATTCGAGTTTATC---CAAAATATTCCAA------TATGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................CGCACTTCCACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	9
.....TA----------------------------TTAT------------------------------------TTTTTCCCCAATTTCTACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0	0
............................................................................TTTTCCCCAATTTCTACCGATA------................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0
...................................TTAT------------------------------------TTTTTCCCCAATTTCTACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0
....................................TAT------------------------------------TTTTTCCCCAATTTCTACCGATA------................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
....................................TAT------------------------------------TTTTTCCCCAATTTCTACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................................................................CGCACTTCCACTAGCTGAGTAACGGGT.......................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0	0
....................................TAT------------------------------------TTTTTCCCCAATTTCTACCGATA------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0
.............................................................................TTTCCCCAATTTCTACCGATA------TTCC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0

droYak3

AAGTCT------------------------------------------------------------------------------------------------------------------------------------------TTCCTTCGCACTTCCACTAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTCGACTAT-------------A----GCGTTCTCT-CT-------------------------------------------------------------------------------T-----GTT--TAT--TATAAAATCTTATT------------------------GCT-----TAGTAATAA-------GT--A--CTT-----------------------TATAGTCAAGGCACTCAACT---AT-ACCATT--TCTTATTGTTTTTTACTATAGTTTAAGCTCTTCCAT---TAGAACTTTGTCT--AAAAG--------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................TTCGCACTTCCACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................................	28	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10
.................................................................................................................................................................................ATCAGATAGTCGGGGAACT....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................TCAGATAGTCGGGGAACTCGA.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTTCAGTATAATCTCCTTCCA-CGCGGTATATTGTCGTTAAAAGTGTTACAG-------GAGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTCT---------------------------------------------------------------------------------------------------------------------------------------------CACTCGCACTCCCCTTAGCTGAGTAATGGGTATCTGACAGTCGAGGTCTTCTACTAT----------------------TCTCT---------------------------------------------------------------------------------TTAAATTT---TCAT--TGTTGTAATTCAGTTG-----AAAAAAA----------------------------------AC--T--TTA-----------------------AACT-------------------------------GTGTGTT----T----------------------------------------------TTTAATAA-------TGATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCCAAA----------------------------AAAA----------------------------TTGACTTTT-TTCC--CA-----------TAGTGCATTCGTTAAAAAATTACGGCGGATCAAAGTTTTTATCTTCATCTCCTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTAT-------------A----GCGTTCTCT-CT-----------------------------------------------------------------------------------------------TGTTGTATTTGATTTG-ACTC-------------------------------------------------TT----------TTTTTACCCAGAATCTTGTAATA-------------ATAATTTACAAATT---TGTTTTTTTT------------------------------------------------------------CTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTATTTCTCTTTTCAGTATAATCTTCTTCCT-CGCGGAATATTATCCTTAAAAGTTTTACAA-------GAGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCACAT----------------------------TATG-------------------TTAA-----------------------------------------------TGCAAAGTCT--------AAAGTT----------G---------------TTTAGCTGAGTAACGGGTATCTAATAGTCGAGGCACTCGACTAT-------------A----GCGTTCTCT-CT-------------------------------------------------------------------------------T-----GTTTTTGTGCTGTGAAATGCCAGTTGCATTTCAGAAACATATTTTTAAAGACACCATCAAAACAGA-----TTTTTCTTTGGTTGGGAGCTTCGT-------------T------------------------------------------------------------------------ATTATTGTGTTTCTTATATTTACCA-------GCACT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATTTAA----------------------------CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTTTTTATTTTTTTCAGTATAATCTTCTTCCG-CGAGGAATATTATCTTTGAAAGTTTTACAG-------GAACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTCTTGT----------------------------TTTT------------------------------------T-TTTT-------------------------------------------------------------------------------------------------------------GTTAATGTTTCGTTTAGTCATAATATAATATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATCTTCGTTTCAGTATAACCTTCTTCCT-CGTGGCATATTATCACTAAAAGTGTTGCAG-------GAGCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTA----AAACACGAAGTTTTTTAGCTTTTCACATTTT---TGTGGCACGCATATGGATTAATAAAGATTATTATT-----------------------------------------AA--------GAA-------------------------------------------------------------------------------------------------ATTGTGTGTTTGCTAA--AGGAACGTGGGGCCACACGTCCCGGAG-ATAACAAGAATTTCCTAATATTTTCTAT-----TTTCTTAA--TTT---TCT----------TCTCCTTAA-AATCGAAAAAC----------------------------------CT--G--TTG-----------------------TTTTTTATTA----------TATAT-ATTTGCTAAATACTT--------------------------------------------------------TTTT-------TTTCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................GTGTTTGCTAA--AGGAACGTGG.........................................................................................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
........................................................................TATT-----------------------------------------AA--------GAA-------------------------------------------------------------------------------------------------ATTGTGTGTTTGC........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
.........................................................................ATT-----------------------------------------AA--------GAA-------------------------------------------------------------------------------------------------ATTGTGTGTTTGCTAA--AG.................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0

droBip1

CATTATA----------------------------TTAA------------------------------------TTTTTGTTTC------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------TTT---TCAG--TTTTTTA--------------------------------------------------------T--C--TTA-----------------------TTTTTAAACA-------------AA-ATTTACTAGTTATTTACTTTATTTA-----------------------------------------------CTGACTTATTATAAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTT----AGCCAAGGAGTTTTGTTTGTTTT----TTTTATACCCGGTAC---------------------------------------------------------------------T--------CAAAGA----------G---------------TATAGGAGTATATTGGATCTTTGGTGATCGTGATCATTTTTTGTTCCGACCCCATAAAGTATACATATTCTGTGTGTTAGTTCT--AGTTA-----------TAGTCATGTCG-AAAACGTGAATTTTAATTAAATTTTTGT-----AT----------------------------------------------------------------------------------------------------------------------T-----A------------------------TTATTATAATTCTTTTTTCAGTATACCCTACTGCCT-CGAGGAATATTATCCCTAAAAGTTTTACAA-------GAGCT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTT----AGCCAAGGAGTTTTGTTTGTTTT----TTTTATACCCGGTAC---------------------------------------------------------------------T--------CAAAGA----------G---------------TATAGGAGTATATTCGATCTTTGGTGATCGTGATCATTTTTTGTTCCGACCCCATAAAGTATACATATTCTGTGTGTTAGTTCT--AGTTA-----------TAGTCATGTCG-AAAACGTGAATTTTAATTAAATTTTTGT-----AT----------------------------------------------------------------------------------------------------------------------T-----A------------------------TTATTATAATTCTTTTTTCAGTATACCCTACTGCCT-CGAGGAATATTATCCCTAAAAGTTTTACAA-------GAGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................TCCGACCCCATAAAGTATAC.........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

ATTTTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTTTTTGATTAA-ATTTAAATAAA----------------------------------AT--C--AAA-----------------------ACTTACAACA-------------AT-ACTTGC--ATTAGCGGTGTTGTTGTTTTGTTTATCTCTTTTGCT-T------TTGTGTCTTTA------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACA-------------AT-ACTTGC--ATTAGCGGTGT....................................................................	26	20	1.25	25	0	17	0	8	0
.......................................................................................................................................................................................................................................................................................................................GAA--TTC---TTGC--TGTCGTTTTTGATTAA-...............................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..TTTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTG...................................................................................................................................................................................................................	25	20	0.70	14	0	14	0	0	0
....TAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TG..............................................................................................................................................................................................................	26	20	0.70	14	0	14	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGC--ATTAGCGGTGTTGTTG...............................................................	22	20	0.60	12	0	8	0	4	0
.....................................TC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTT.........................................................................................................................................................................................................	26	20	0.35	7	0	0	0	7	0
....................................TTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTT.........................................................................................................................................................................................................	27	20	0.30	6	0	5	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................C--AAA-----------------------ACTTACAACA-------------AT-ACTTG..................................................................................	21	20	0.25	5	0	5	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAA--TTC---TTGC--TGTCGTTTTTG.....................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCTCTTTTGCT-T------TTGTG..............................	21	20	0.15	3	0	3	0	0	0
...TTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACA-------------AT-ACTTGC--ATTAGCGGT......................................................................	24	20	0.15	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTTTATCTCTTTTGCT-T------T..................................	24	20	0.10	2	0	0	0	2	0
...................................TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTC............................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.............................................................................TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCG...........................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------------AT-ACTTGC--ATTAGCGG.......................................................................	19	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTTTATCTCTTTTGCT-T------TTGT...............................	27	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTTTGTTTATCTCTTT...............................................	21	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC--ATTAGCGGTGTTGTTGT..............................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTTTGCT-T------TTGTGTCT...........................	21	20	0.05	1	0	1	0	0	0
.............................................................................TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTTTT.......................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTTTATCTCTTTTGCT-T------TTG................................	25	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAA-ATTTAAATAAA----------------------------------AT--C--AAA-----------------------ACTTACA..........................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTATCTCTTTTGCT-T------TTGTGTCT...........................	27	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGC--ATTAGCGGTGTTGTT................................................................	20	20	0.05	1	0	0	0	1	0
.....................................TC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGT.............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGTTTATCTCTTTTGC............................................	21	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTTTGTTTATCTCTT................................................	21	20	0.05	1	0	1	0	0	0
......T----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCG...........................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTATCTCTTTTGCT-T------TTGTGTC............................	26	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTGTTTTGTTTATCTC..................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTTGTTGTTTTGTTTATCTCT.................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTCTTTTGCT-T------TTGTGTCTT..........................	23	20	0.05	1	0	0	0	1	0
...........................................................................A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TGTCGTTTT.......................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...TTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTG...................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAACA-------------AT-ACTTGC--ATTAG..........................................................................	21	20	0.05	1	0	1	0	0	0
..TTTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---T.....................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATCTCTTTTGCT-T------TTGTGTCTT..........................	27	20	0.05	1	0	1	0	0	0
...TTAT----------------------------TTTC------------------------------------A-TTTC---------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------GAA--TTC---TTGC--TG..............................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGGTGTTGTTGTTTTGTTT.......................................................	22	20	0.05	1	0	1	0	0	0

droVir3

TATCATA----------------------------AGTG----------------------------TTGTTTTTT-TTTC-----------------------------------------------------------------------TACCTTTAGAAACCGAGCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCCAAAATATTTTTTTCAGCA-----TCGAAATAAGTTAAATGT-----ATA-----------------------TATTGCTAAA-------------TT-ATATA---AAAATGCACTTCCTATTCCAGTATAATCTCCTTCCT-CGTGGTATATTGTCCTTGAAAGTTCTTCAA-------GAGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCT-CGTGGTATATTGTCC...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTCCTTCCT-CGTGGTATATTGTCC...........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATATTGTCCTTGAAAGTTCT................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCT-CGTGGTATATTGTCCTTGAAAGC...................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTCCTTCCT-CGTGGTATATTGTCCT..........................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTCCTTGAAAGTTCTTCAA-------GAGT.	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATTAAT----------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-TATCTTTCAGTATAATCTTCTACCT-CGCGGTATATTATCCTTAAAAGTTCTGCAA-------GAGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTAATTTATATTTCAGTATAATCTTCTTCCT-CGTGGTATTCTGTCCTTGAAAGTTCTTCAA-------GAGTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTTCTTCCT-CGTGGTATTCTG..............................	25	1	1.00	1	1	0

dsi_30442

2r:2173742-2173891 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.2	-14.0	-14.0