ID:

dsi_30441

 Coordinate:

3r:10816960-10817094 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.2 -24.9 -24.9

Flybase annnotation

exon [3r_10816844_10816959_+]; CDS [3r_10816844_10816959_+]; CDS [3r_10817095_10817293_+]; exon [3r_10817095_10817534_+]; intron [3r_10816960_10817094_+]

No Repeatable elements found

mature
  1. 2l:6345142-6345156 +
  2. 2r:13124896-13124910 +
  3. dsi_30441  3r:10816993-10817007 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGGTCACCACACTCGCCAAACTTGCCACAGGAGATGGCCCCAATTATCAGTAAGTGTTAGCAATCAGTAATCAGTGAATTCATTTTGGAAAACTTTCGATGATGACGGCAACGGAACAAGTGTAATCTTATCAATATAATTAGCGCATGACGTGATTATTAAATAGTAATCATGCTTGTTCCAGGGTAGTGAATGTGATTTCGGCATCTAGCCAACTGGTGGCTGGGTCGCTGC
**************************************************......(((.((..(((...((((((...((((...))))..)))...)))..)))..)))))((((((((..((((..((....))..))))........((((((((((....))))))))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 M053
female body
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
.......................................................................................................................................................................................AGGGTGGTGAATGTGA.................................... 16 1 6 2.33 14 14 0 0 0 0 0 0 0
..........................................AATTCCCAGTAAGTGTGAGCA............................................................................................................................................................................ 21 3 3 1.67 5 5 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCAGGGTGGTGAATGTGA.................................... 19 2 2 1.50 3 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CAACTGGTGGCTGGGTCGCT.. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTCGGCATCTAGCCAACTGGTGGCTGGG....... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
..................AAACTTGCCACAGGAGATGGCCCCA................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TGAATGTGATTTCGGCATCTA........................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TAGCCAACTGGTGGCTGGGTCGCT.. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TAGCCAACTGGTGGCTGGGTC..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................AATTCCCAGTAAGTGTTAG.............................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................GGTAGTGAATGTGATTTCGGCATCTA........................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TCAGGGTGGTGAATGTGA.................................... 18 2 12 0.67 8 8 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCAGGGTGGTGAATGTGA.................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
................................................................TCAGTAATCGGACAATTCATT...................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
..........................................AATTCTCAGTAAGTGTGAG.............................................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................ATCCAGGGTGGTGAATGTGAA................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CAGGGTGGTGAATGTGA.................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................TTTTGGAAAACTTTC......................................................................................................................................... 15 0 3 0.33 1 1 0 0 0 0 0 0 0
................................................CAGTAAGTGTGAGCA............................................................................................................................................................................ 15 1 6 0.33 2 2 0 0 0 0 0 0 0
....................................................................................................................................................TGACGCGATTGTTAAATA..................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1
.........................................CAATTCCCAGTAAGTGTGAG.............................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
....................................GTCCCCAATTATCGCTAAGT................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
..........................................AATTCCCAGTAAGTGTTA............................................................................................................................................................................... 18 2 11 0.18 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGGGTGGTGAATGTGATG.................................. 18 2 11 0.18 2 2 0 0 0 0 0 0 0
.................................................................................................CGATAATGACGGTACCGGA....................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 2 0 0
.................................................................................................CGATAATGACGGTACCGGAA...................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................ATACAGGGTGGTGAATGTGA.................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCAGGGTGGTGAATGT...................................... 17 2 18 0.11 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................ATCAGGGTGGTGAATGTGAT................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................................TGATGATGGCAACGGA....................................................................................................................... 16 1 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCAGGGTGGTGAATGTG..................................... 18 2 11 0.09 1 1 0 0 0 0 0 0 0
..........................................AATTCTCAGTAAGTGTGA............................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0 0
.............................AGGAGATGGCGCCAA............................................................................................................................................................................................... 15 1 18 0.06 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGGGTGGTGAATGTGTT................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................TCAGTAAGTGTCACCA............................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................TGAACAACTTTCGATGA.................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................ATGCAGGGTGGTGAATGT...................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AACCAGTGGTGTGAGCGGTTTGAACGGTGTCCTCTACCGGGGTTAATAGTCATTCACAATCGTTAGTCATTAGTCACTTAAGTAAAACCTTTTGAAAGCTACTACTGCCGTTGCCTTGTTCACATTAGAATAGTTATATTAATCGCGTACTGCACTAATAATTTATCATTAGTACGAACAAGGTCCCATCACTTACACTAAAGCCGTAGATCGGTTGACCACCGACCCAGCGACG
**************************************************......(((.((..(((...((((((...((((...))))..)))...)))..)))..)))))((((((((..((((..((....))..))))........((((((((((....))))))))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.................................................................................GTAAAACCTTTTGAAAGC........................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
....AGTGGTGTCAGCGATTTG..................................................................................................................................................................................................................... 18 2 3 0.67 2 0 2 0 0 0 0 0 0
.ACCGCTGGTGTGAGCGGTTTTAA................................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0
......................................................................TAGTCCCTTAAGTAA...................................................................................................................................................... 15 1 13 0.46 6 0 0 0 4 0 0 1 1
.............................TCCTCTAGCGGGGTTA.............................................................................................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0
..........................................................................................................GCCGTACCCTTGTCCACAT.............................................................................................................. 19 3 18 0.17 3 0 0 0 0 3 0 0 0
..................................................................................................................................................................................CAAGGTCCCAGCAGTTATA...................................... 19 3 11 0.09 1 0 0 0 0 0 1 0 0
.......GGTGTGAGAGGTTTG..................................................................................................................................................................................................................... 15 1 15 0.07 1 0 0 1 0 0 0 0 0
..............................CCTCTACCGCGGGTAAT............................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:52 AM