dsi_30440

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

AGCGACAGACACAGAAACAGCAACGGCAACAACAGCAACAGCAACTGCAACTGGCGAGTGTGGGCTGCCAGCAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAGCGGCGACACCAGCGGCAACTGCAACAACAGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACAATG ***************************************************************************************..((....((((...(((...((((............))))...))).)))).))********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...................GCAACGGCAACAACAGCAACA..................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........................................................................................TTGTGGGTGCTGCCACAGAAGTGCT........................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
...................................................................................AAGAGTTTGTGGGTGCTGCCAC.................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................GATAAAGCAACATTGACAGCGGC..........................................................................................................	23	0	1	1.00	1	0	1	0	0	0
....................................................................................................................GCAACGATAAAGCAACATTGACAGCGGC..........................................................................................................	28	0	1	1.00	1	1	0	0	0	0
............................................................................ACATCACGAGAGTTTGT.............................................................................................................................................................	17	2	7	0.29	2	0	0	2	0	0
................................................................................................................CTGTGAAACGATAACGCA........................................................................................................................	18	2	7	0.29	2	1	0	0	1	0
.....................................................................................................................................................................................................................GCCCAACCGTCGTAAGACT..................	19	3	5	0.20	1	0	0	0	0	1
........................................................................AGCAAGATCCCAAGA...................................................................................................................................................................	15	1	14	0.07	1	0	0	1	0	0
................................................................................................................CTGTGAAACGATAACGC.........................................................................................................................	17	2	16	0.06	1	0	0	0	1	0
....................................AACAGCAACTGCAAC.......................................................................................................................................................................................................	15	0	20	0.05	1	0	0	1	0	0

TCGCTGTCTGTGTCTTTGTCGTTGCCGTTGTTGTCGTTGTCGTTGACGTTGACCGCTCACACCCGACGGTCGTCGTTGTAGGGTTCTCAAACACCCACGACGGTGTCTTCACGACACGTTGCTATTTCGTTGTAACTGTCGCCGCTGTGGTCGCCGTTGACGTTGTTGTCGTCGTTGTTGTGGATTCGGGGCGTAACGTCGCGCAGGCTGGTGCGGGTCGGCGGAATTCTGACACTAGTTTTGCTGTTAC ********************************************************************************************************..((....((((...(((...((((............))))...))).)))).))***************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	M023 head	SRR553488 RT_0-2 hours eggs
.....................................................................................................................GTTGCTTCTTCGTTGTAACTAT...............................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TTGTTGTCGTCGTTGT........................................................................	16	0	20	0.15	3	0	2	0	0	0	1
........................................................................................................................................TGTGGCCGCTGTGCTCG.................................................................................................	17	2	20	0.15	3	3	0	0	0	0	0
....................................................................................................................................................................GTTGTCGTCGTTCTTGTGGTTTCT..............................................................	24	3	12	0.08	1	0	0	1	0	0	0
.............................................................................................................................................................................................................GGCAGGTGAGGGTCGGC............................	17	2	15	0.07	1	0	0	0	1	0	0
.................................................................AAGGTCGTCGCTGTAGG........................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................CCGCTGTGGTCGTCCTAGAC.........................................................................................	20	3	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................GTTGTTGTCGTCGTTGTTGT.....................................................................	20	0	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:10951258-10951507 +	dsi_30440	AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAACAGCA--A--------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACAGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droSec2	scaffold_0:11782981-11783230 +		AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAACAGCA--A--------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACAGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
dm3	chr3R:10257859-10258102 -		AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAA----------------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACTGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droEre2	scaffold_4770:9790627-9790885 -		AGCGACAGACACAGAAACAG------------CA---------------A----------------------CTGCAACAGGCGAGTGTGGGCTGCCGGCAGC------------AGCA------GCAGCAACAGCCGCA---------G---CAGCAACATCCGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCCACATTGACAG---CGGCCACACCA------G-CAACGGCAACTG---------CGGCAACTGCGGCAACTGCAACACCTAAGCCCCGCGTTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAGACGACA------------------------------------------ATG
droYak3	3R:16182018-16182249 +		AGCGACGGACACAGAAACAG------------AA---------------ACAGCA--A--------------CTACAACTGGCGAGTGTGGGCTGCCAGCAGC------------AACA------------ACAGTCGCA---------G---CAGCAACATCCGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACCA------G-------------------------------------CAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droEug1	scf7180000409584:250015-250255 +		AGCAACAGAAACAGCAACGG------------CAACGGCGGCAACAGCAAC-------------------AACAGCGACTAGCGAGTGTGGGCTGCCAGCAGC------------AACA------ACA------GCAACA---------G---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CAACAACA----------------------------------------------ACAGAAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droBia1	scf7180000301592:83398-83628 +		AGCAGCAGGCCATGCAGCAG------------CAGCAGCAACAACAGCAGCAGCAGC-------------AACAC------------------CA------------------------------------CCAGCAGCA---------G---CAGCAACAGCCCAAAAT--------------GGGAGGTGTGCCGAACTTTAAC-AAGCAGCAGCAACAGGTGCCGCAACAGCA------GC----AGCAACTG---------CAG---CAACAGCAGCAGCAATACTCG--CCCTTC-----AG---------------------------------CAACCAGAACGCCAATGCGGCGGCCAACTTCCTCAACTGTCCGCCAAGGGGGCCAAATG
droTak1	scf7180000415396:222058-222328 -		CGCAACAGAAACAGCAACGG------------CAACGGCGGCAACAGCAAC-------------------AACAGCGACCAGCGAGTGTGGGCTGCCAGCAGC------------AACAACAGAAACAGCGACAGCAGCA---------A---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACAGCA------AC----AGCAACGG---------CAA---------CACCAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droEle1	scf7180000491047:877097-877373 +		AGCAACAGAAACGGCAACGG------------CTACGGCGGCAACAGCAACAGCAAC-------------AACATCAACTAGCGAGTGTGGGCTGCCAGCAAC------------A---------G---------CAACA---------G---CAACAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCATCGATAAAGCAACATTGACAG---CGGCAACACTA------G-CAACAGCAACAG---CAACACCAGACACACCAGCAACAGCAACACCTAAGCCCCGCATTGCAGCTCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droRho1	scf7180000762751:47088-47358 -		AGCAACAGAAACGGCAA------------------CGGCGGCAACAGCAAC-------------------AACAGCAACTAGCGAGTGTGGGCTGCCAGCAGC------------AACA------ACAGCAACAGCAGCA---------G---CAGCAGCATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACTA------G-CAACAGCAACAC---------CAGACACACCAGCAACAGCAACATCTAAGCCCCGCATTGCAGCTCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droFic1	scf7180000453912:751038-751335 -		AGCAACAGCAACAGAAACGG------------CAACGGCGGCAA----------------------------CAGCAACTAGTGAGTGTGGGTTGCCAGCAGCAGCAACAACAACAATAGCAGCAACAACA------AAAGCAGCGGGAG---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACCA------G-CCACAGCAACAGCAACAGCAATTGCAACAGCAACACAAGAAACACCTAAGCCCCGCATTGCAGCTCGTCCGGCCACGCCCACCCGCCTTAAGACTGTGATCAAAACAACA------------------------------------------ATG
droKik1	scf7180000302475:2406304-2406535 -		AGCAACCGAGACCGAAACAG------------CAACGG-------------------------------------CAACTGGCGAGTGTGGGCTGCCAGCAAC------------A---------A---------CGGCA---------G---CAGCAACAACAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGTTGTGCAGCGATAAAGCAACATTGACAG---CAGCAGCA----------------GCAACAG---------CAA---CATCTGAAGTTG---CAACTAAGCCCCGCATTGCAGCGCGTCCCACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG
droAna3	scaffold_13340:431424-431640 -		AGAAACAGAAACAGCTAAAGCTACAGCAACAG----------------------------------------CAACATCCAGCGAGTGTGGGCTGCCAACC------------------------G---------AGGCA---------G---CAACGGCAGGCGAGGAGCTTGTGGGTGCTGCCACAGAAGTGCTGTGCGGCGATAAAGCAACATTGACAG---CAGCAACACCA----------------------------------------------------ACTAAGCCCCGCATTGCGGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG
droBip1	scf7180000394085:542970-543180 +		AGCAACAGAAACAGCTAAAGT------AACAG----------------------------------------CCACATCCAGCGAGTGTGGGCTGCCAACC------------------------G---------AGGCA---------G---CCGCGGCAAGCGAGGAGCTTGTGGGTGCTGCCACAGAAGTGCTGTGCGGCGATAAAGCAACATTGACAG---CAGCAACACCA----------------------------------------------------ACTAAGCCCCGCATTGCGGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG
dp5	2:16311927-16312197 -		AGCAACAGCAACAGCAAACGTATCT---------------GCAACAGCAACAGCA--ACAGACCTAGCTG--CCACAGCCTGCGAGTGTGGGCTGACAACAAC------------A---------GCGGCAGCAGCAGCA---------G---CGGCAGCAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CAGCAACAACA------AC----CGCAA---------------------CAGCAACAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG
droPer2	scaffold_0:4086986-4087274 +		AGCAACACCAACAGCAAAACTATCT---------------GCAACAGCAACAGCA--ACAGACCTAGCTG--CCACAGCCTGCGAGTGTGGGCTGACAACAAC------------A---------GCG------GCAGCA---------G---CAGCAGCAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGCCAG---CAGCAACAACAAGCGCAAC----AGCAACAG---CAACAACAGCAACAGCAACAACAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG
droWil2	scf2_1100000004902:10036544-10036787 +		AGCAACAACAACAACAACAACTGCT---------------GCAACATCAACATCG--TCT------GCGG--CCACAGCCAGCGAGTGTGGGTTGACGGCAC---------------------------------------------------CACAAATAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CAACAGCAACA------A----------------------------CAACAACACCACCAATATCTAAGCCCCGCATTGCACAGCGACCAACCACGCCCAGCCGCCTCAAAACTGTGATCAAAACGACA------------------------------------------ATG
droVir3	scaffold_13047:14664030-14664294 +		AGCAGCAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAGCCAGCGAGTGTGGGTTGACACTGCCAAC------ATCAGCAACAGCAACGGCAACAGCAACA---------GCGACAACAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CAACAGCAACG-------------------T---------------TGCCGCCAACAACAACACCTAAGCCCAGCATAGCAGCACGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG
droMoj3	scaffold_6540:18117467-18117743 +		AGCAGCAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAGCCAGCGAGTGTGGGTTGACACTGCCAAC------ATCAGCAGCA---GCAGCAGCAACAGCA---------A---CAGCAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGCGCAGCGATAAAGCAACATTGACAG---CAACAGCGACG------G-CGACAGCGACAG---------CAACATTGCCGCCAACAACAACACCTAAGCCCAGCATAGCTGCACGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACAACA------------------------------------------ATG
droGri2	scaffold_14830:5304595-5304892 -		AGCAACAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAAGCAGCGAGTGTGGGTTGACACTGCCAACAGCAACATCAACAGCGACAACAGCG------ACAGCAACGGCAA---CAGCAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTACTGTGCAGCGATAAAGCAACATTGACAG---CAGCAACAACA------A-TATCGACATCGCCGACGCCGCCGCCAACACCAACACCAACAACACCTAAGCCCAGCATAGCAGCACGTCCGACTACACCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAACAGCA--A--------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACAGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................G------------CAACGGCAACAACAGCAACA...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTGTGGGTGCTGCCACAGAAGTGCT...........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AAGAGTTTGTGGGTGCTGCCAC....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GATAAAGCAACATTGACAG---CGGC..........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAACGATAAAGCAACATTGACAG---CGGC..........................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AACAGCA--A--------------CTGCAAC................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAACAGCA--A--------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACAGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................CCGCATTGCAGCGCGTCCGACCACGCCC...........................................................................	28	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................ACCA------GC----GGCAACTG---------CAA---CAACAGC.........................................................................................................................	24	1	1.00	1	1	0	0	0
....................................................GCA--A--------------CTGCAACTGGCGAGTGTGGGCT.................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
......................................................A--A--------------CTGCAACTGGCGAGTGTG.....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0

dm3

AGCGACAGACACAGAAACAG------------CAACGGCAACAACAGCAA----------------------CTGCAACTGGCGAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACATCCCAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CGGCGACACCA------GC----GGCAACTG---------CAA---CAACTGCAGCAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................CGACCACGCCCAGCCGCCTTAAGAC.............................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9
................................................................................................................................................................................................................AGCAACATTGACAG---CGGCGACACC....................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................................AAGAGTTTGTGGGTGCTG........................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CACGCCCAGCCGCCTTAA................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGCAACTGGCGAGTGTGGG...................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GCAA----------------------CTGCAACTGGCGAGTGTGGGCT.................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................TGCAACTGGCGAGTGTGGGCTGC...............................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................TTAAGACTGTGATCAAAACGACA------------------------------------------A..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ACGCCCAGCCGCCTTAAGACT............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GAGTGTGGGCTGCCAG------------------------------------------------------CAGCAACA..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TGCCAG------------------------------------------------------CAGCAACATCCCAAGAG.....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TGGGCTGCCAG------------------------------------------------------CAGCAACATC............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAAGAGTTTGTGGGTGCTGT.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AGTGTGGGCTGCCAG------------------------------------------------------CAGT..................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACTGCAGCAACAACAC..............................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................A---CAACTGCAGCAACAACA...............................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCGACAGACACAGAAACAG------------CA---------------A----------------------CTGCAACAGGCGAGTGTGGGCTGCCGGCAGC------------AGCA------GCAGCAACAGCCGCA---------G---CAGCAACATCCGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCCACATTGACAG---CGGCCACACCA------G-CAACGGCAACTG---------CGGCAACTGCGGCAACTGCAACACCTAAGCCCCGCGTTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAGACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................GAGTGTGGGCTGCCGGCAGC------------AGC.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
..........................................................................GCAACAGGCGAGTGTGGGCTGCC..............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...GACAGACACAGAAACAG------------CA---------------A----------------------CT.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CCTTAAGACTGTGATCAAGACGACA------------------------------------------A..	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................G---CAGCAACATCCGAAGAGTTTGT................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
...................G------------CA---------------A----------------------CTGCAACAGGCGAGTGTGGG...................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................ATCCGAAGAGTTTGTGGG.............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
................ACAG------------CA---------------A----------------------CTGCAACAGGCGAGT........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................................A---------------A----------------------CTGCAACAGGCGAGTGTGGGC..................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.............................................................................ACAGGCGAGTGTGGGCTGCCGGC...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................TAAAGCCACATTGACAG---CGGCC.........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......AGACACAGAAACAG------------CA---------------A----------------------CTGCAACAGGC............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................ATCCGAAGAGTTTGTGGGTGCTGC.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................AACTG---------CGGCAACTGCGGCAACTGCA..................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCAACTG---------CGGCAACTGCGGC.........................................................................................................................	20	4	0.25	1	0	0	0	0	1	0	0
.................................................................................................................................CAACAGCCGCA---------G---CAGCAAC...............................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	1	0

droYak3

AGCGACGGACACAGAAACAG------------AA---------------ACAGCA--A--------------CTACAACTGGCGAGTGTGGGCTGCCAGCAGC------------AACA------------ACAGTCGCA---------G---CAGCAACATCCGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACCA------G-------------------------------------CAACAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................ATCCGAAGAGTTTGTGGGTGCTGC.......................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................GCAGC------------AACA------------ACAGTCGCA---------G---CAGCA.................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCCCAGCCGCCTTAAGACTGTG.........................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATAAAGCAACATTGACAG---CGGC..........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AGCGCGTCCGACCACGCCCAGCCG......................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................AAGTGCTGTGCAGCGATAA...............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................CATCCGAAGAGTTTGTGGGTGCT.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................TTGTGGGTGCTGCCACAGAAGTGCTGT.........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................GGCAACACCA------G-------------------------------------CAACAACACCTAAGC........................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CGACCACGCCCAGCCGCCTTAAGACTGT..........................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATAAAGCAACATTGACAG---C.............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GAAGAGTTTGTGGGTGCTGCCACA...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGCAACAGAAACAGCAACGG------------CAACGGCGGCAACAGCAAC-------------------AACAGCGACTAGCGAGTGTGGGCTGCCAGCAGC------------AACA------ACA------GCAACA---------G---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CAACAACA----------------------------------------------ACAGAAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAGCAGGCCATGCAGCAG------------CAGCAGCAACAACAGCAGCAGCAGC-------------AACAC------------------CA------------------------------------CCAGCAGCA---------G---CAGCAACAGCCCAAAAT--------------GGGAGGTGTGCCGAACTTTAAC-AAGCAGCAGCAACAGGTGCCGCAACAGCA------GC----AGCAACTG---------CAG---CAACAGCAGCAGCAATACTCG--CCCTTC-----AG---------------------------------CAACCAGAACGCCAATGCGGCGGCCAACTTCCTCAACTGTCCGCCAAGGGGGCCAAATG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGCAACAGAAACAGCAACGG------------CAACGGCGGCAACAGCAAC-------------------AACAGCGACCAGCGAGTGTGGGCTGCCAGCAGC------------AACAACAGAAACAGCGACAGCAGCA---------A---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACAGCA------AC----AGCAACGG---------CAA---------CACCAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAACAGAAACGGCAACGG------------CTACGGCGGCAACAGCAACAGCAAC-------------AACATCAACTAGCGAGTGTGGGCTGCCAGCAAC------------A---------G---------CAACA---------G---CAACAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCATCGATAAAGCAACATTGACAG---CGGCAACACTA------G-CAACAGCAACAG---CAACACCAGACACACCAGCAACAGCAACACCTAAGCCCCGCATTGCAGCTCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAACAGAAACGGCAA------------------CGGCGGCAACAGCAAC-------------------AACAGCAACTAGCGAGTGTGGGCTGCCAGCAGC------------AACA------ACAGCAACAGCAGCA---------G---CAGCAGCATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACTA------G-CAACAGCAACAC---------CAGACACACCAGCAACAGCAACATCTAAGCCCCGCATTGCAGCTCGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCAACAGCAACAGAAACGG------------CAACGGCGGCAA----------------------------CAGCAACTAGTGAGTGTGGGTTGCCAGCAGCAGCAACAACAACAATAGCAGCAACAACA------AAAGCAGCGGGAG---CAGCAACATCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CGGCAACACCA------G-CCACAGCAACAGCAACAGCAATTGCAACAGCAACACAAGAAACACCTAAGCCCCGCATTGCAGCTCGTCCGGCCACGCCCACCCGCCTTAAGACTGTGATCAAAACAACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAACCGAGACCGAAACAG------------CAACGG-------------------------------------CAACTGGCGAGTGTGGGCTGCCAGCAAC------------A---------A---------CGGCA---------G---CAGCAACAACAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGTTGTGCAGCGATAAAGCAACATTGACAG---CAGCAGCA----------------GCAACAG---------CAA---CATCTGAAGTTG---CAACTAAGCCCCGCATTGCAGCGCGTCCCACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAAACAGAAACAGCTAAAGCTACAGCAACAG----------------------------------------CAACATCCAGCGAGTGTGGGCTGCCAACC------------------------G---------AGGCA---------G---CAACGGCAGGCGAGGAGCTTGTGGGTGCTGCCACAGAAGTGCTGTGCGGCGATAAAGCAACATTGACAG---CAGCAACACCA----------------------------------------------------ACTAAGCCCCGCATTGCGGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................TGCTGTGCGGCGATAAAGCAAC.........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................GTGTGGGCTGCCAACC------------------------G---------AGGC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................TAAAGCAACATTGACAG---CAGCAACAC.....................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.GAAACAGAAACAGCTAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................ATTGCGGCGCGTCCGACCACGCCCAGC........................................................................	27	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................AGGCGAGGAGCTTGTGGGT............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................AACGGCAGGCGAGGAGCTTGT................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

AGCAACAGAAACAGCTAAAGT------AACAG----------------------------------------CCACATCCAGCGAGTGTGGGCTGCCAACC------------------------G---------AGGCA---------G---CCGCGGCAAGCGAGGAGCTTGTGGGTGCTGCCACAGAAGTGCTGTGCGGCGATAAAGCAACATTGACAG---CAGCAACACCA----------------------------------------------------ACTAAGCCCCGCATTGCGGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCAACAGCAACAGCAAACGTATCT---------------GCAACAGCAACAGCA--ACAGACCTAGCTG--CCACAGCCTGCGAGTGTGGGCTGACAACAAC------------A---------GCGGCAGCAGCAGCA---------G---CGGCAGCAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CAGCAACAACA------AC----CGCAA---------------------CAGCAACAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................GAAGAGTTTGTGGGTGCTGCC......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GATAAAGCAACATTGACAG---C.............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAGCAGAAGAGTTTGTGGGTGCTGC.......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCCTCAAGACTGTGATCAAAAC.................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTGCAACGATAAAGCAACATTGACAG---C.............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGTGCTGTGCAACGATAAAGC............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............AAACGTATCT---------------GCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TGACAACAAC------------A---------GCGGCAGCAGCAGCA---------G---C.....................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CGCCTCAAGACTGTGATCAAAACGA...............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAACGATAAAGCAACATTGACA..................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................AAC------------A---------GCGGCAGCAGCAGCA---------G---CGG...................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CAAC------------A---------GCGGCAGCAGCAGCA---------..........................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................AACAAC------------A---------GCGGCAGCAGCAGC....................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	1	0	0	0	0	0
................................................................................................CAACAAC------------A---------GCGGCAGCAGC.......................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................A---------GCGGCAGCAGCAGCA---------G---CGGCAG................................................................................................................................................................................................................................................	23	13	0.08	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CAA---------------------CAGCAACAGCAACACC.............................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCAACACCAACAGCAAAACTATCT---------------GCAACAGCAACAGCA--ACAGACCTAGCTG--CCACAGCCTGCGAGTGTGGGCTGACAACAAC------------A---------GCG------GCAGCA---------G---CAGCAGCAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGCCAG---CAGCAACAACAAGCGCAAC----AGCAACAG---CAACAACAGCAACAGCAACAACAGCAACACCTAAGCCCCGCATTGCAGCGCGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................AGCCCCGCATTGCAGCGCGTCCGA...................................................................................	24	1	1.00	1	0	0	1	0	0	0
......................................................A--ACAGACCTAGCTG--CCACAGCCTG.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
................................................AACAGCA--ACAGACCTAGCTG--CCACAG.................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................ACAACAAC------------A---------GCG------GCAGCA---------G---CA....................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
.................................................................................................AACAAC------------A---------GCG------GCAGCA---------G---C.....................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0	0

droWil2

AGCAACAACAACAACAACAACTGCT---------------GCAACATCAACATCG--TCT------GCGG--CCACAGCCAGCGAGTGTGGGTTGACGGCAC---------------------------------------------------CACAAATAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAGCGATAAAGCAACATTGACAG---CAACAGCAACA------A----------------------------CAACAACACCACCAATATCTAAGCCCCGCATTGCACAGCGACCAACCACGCCCAGCCGCCTCAAAACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................TGTGGGTGCTGCCACAGAAGTGCTGT.........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............................................................................AGCCAGCGAGTGTGGGTTGACGG............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............................................................................AGCCAGCGAGTGTGGGTTGACGGCA..........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................ATAGCAGAAGAGTTTGTGGGTGCTGC.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.........................................................................CACAGCCAGCGAGTGTGGGT..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................T------GCGG--CCACAGCCAGCGAGTGTGGGT..................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................AATAGCAGAAGAGTTTGTGGGT............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................ATAGCAGAAGAGTTTGTGGGT............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................................AACATCAACATCG--TCT------GC...........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
............................................................................AGCCAGCGAGTGTGGGTTGACGGC...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..CAACAACAACAACAACAACTGCT---------------GC.....................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0

droVir3

AGCAGCAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAGCCAGCGAGTGTGGGTTGACACTGCCAAC------ATCAGCAACAGCAACGGCAACAGCAACA---------GCGACAACAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGTGCAACGATAAAGCAACATTGACAG---CAACAGCAACG-------------------T---------------TGCCGCCAACAACAACACCTAAGCCCAGCATAGCAGCACGTCCGACCACGCCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................CAGCAGAAGAGTTTGTGGGT............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GAAGTGCTGTGCAACGATAAAGC............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CGCCCAGCCGCCTCAAGACTGTGAT.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ACATTGACAG---CAACAGCAACG-------------------T---------------................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................AACAGCAACG-------------------T---------------TGCCGCCAACAACAACAC..............................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TGCCGCCAACAACAACACCTAAGCC.......................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AACAGCAGAAGAGTTTGTGGGTGCT.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................GTGCAACGATAAAGCAACATTGACAG---C.............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................CAGCATAGCAGCACGTCCG....................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GATAAAGCAACATTGACAG---CA............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AGCCAGCGAGTGTGGGTTGACACTGC.........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AGCAACGG----------------------------------------CCACAGCCAGCGAGTGTGGGTTGACACTGCC........................................................................................................................................................................................................................................................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................C------ATCAGCAACAGCAACGGC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAAGCAACATTGACAG---CAACAGCAACG-------------------T---------------................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AACAGCAACG-------------------T---------------TGCCGCC.........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGTGCAACGATAAAGCAACATTGACAG---C.............................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AACG-------------------T---------------TGCCGCCAACAACAAC................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................AACAGCAACGGCAACAGCAACA---------GC........................................................................................................................................................................................................................................................	24	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CAACA---------GCGACAACAACAG.............................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AACAGCAACGGCAACAGCAAC....................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................ACAGCAACGGCAACAGCAA.....................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CAGCAACAGCAACGGCAAC..........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGCAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAGCCAGCGAGTGTGGGTTGACACTGCCAAC------ATCAGCAGCA---GCAGCAGCAACAGCA---------A---CAGCAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTGCTGCGCAGCGATAAAGCAACATTGACAG---CAACAGCGACG------G-CGACAGCGACAG---------CAACATTGCCGCCAACAACAACACCTAAGCCCAGCATAGCTGCACGTCCGACCACGCCCAGCCGCCTTAAGACTGTGATCAAAACAACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................CACTGCCAAC------ATCAGCAGCA---GCAGC.............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GCATAGCTGCACGTCCGACCA................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................GTGGGTTGACACTGCCAAC------ATCAGCAGC......................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......ACAACAACGAACGTGGCAGCAACGG----------------------------------------CC.....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................................................................................GCGAGTGTGGGTTGACACTGCC........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................GCAACAGCAGAAGAGTTTGTGGGTGCT.........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................AACAGCGACG------G-CGACAGCGAC.................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................GCAGCAGCAACAGCA---------A---CAGC..................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
................................................................................................................ATCAGCAGCA---GCAGCAGCAAC.......................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

AGCAACAACAACAACGAACGTGGCAGCAACGG----------------------------------------CCACAAGCAGCGAGTGTGGGTTGACACTGCCAACAGCAACATCAACAGCGACAACAGCG------ACAGCAACGGCAA---CAGCAACAGCAGAAGAGTTTGTGGGTGCTGCCACAGAAGTACTGTGCAGCGATAAAGCAACATTGACAG---CAGCAACAACA------A-TATCGACATCGCCGACGCCGCCGCCAACACCAACACCAACAACACCTAAGCCCAGCATAGCAGCACGTCCGACTACACCCAGCCGCCTCAAGACTGTGATCAAAACGACA------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................AACAACACCTAAGCCCAGCATA................................................................................................	22	1	1.00	1	1	0
..................................................................................................................................................................................................................................................A-TATCGACATCGCCGACGCCGCCGCCTG................................................................................................................................	28	1	1.00	1	1	0
..............................................................................GCAGCGAGTGTGGGTTGACACT...........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
......................................................................................................................................................................AGAGTTTGTGGGTGCTGCCACA...................................................................................................................................................................................................................	22	1	1.00	1	1	0
.............................................................................................................................................................................................................................G---CAGCAACAACA------A-TATCG......................................................................................................................................................	18	1	1.00	1	1	0
..................................................................................................................................G------ACAGCAACGGCAA---CAGC..................................................................................................................................................................................................................................................	18	5	0.20	1	1	0

-13.7	-13.3	-13.1	-13.1

dsi_30440

3r:10951308-10951457 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads