ID:

dsi_30436

 Coordinate:

2r:5817250-5817399 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.5 -3.21 -2.9 -2.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+

Sense Strand Reads

AGTGAAGGTTTTTGTTGAGAGCCTCTTTTCCGATTGTTGTTGTGTTAACCTAACCCCAAGGTTATATGATGATAATAACTAAACTAATTCAAGTAACTTGTGCATTTCTTTGTCTTTTTTCTTTCTCTCTCTCTCTCTTTCTCTTCTTCCCCTGATCTTTTTGTGTGACCCGTCCATGCTGCCGCCGATGCAACTCGTAGAATCCCCAGAACAGCAGGCCAGCCGCCAATCGCCAGAGAAGCAGCCAGTC
*************************************************************.(((((((((...................................................................................................)))).))).))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M025
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
......................................................................................................................................................................GACCCGTCCATGCTG..................................................................... 15 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTGTGACCCGTCCATGCTGCCGCCGA.............................................................. 27 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................CTCGTAGAATCCCCAGAACAGCAGGC............................... 26 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................CTCGTAGAATCCCCAGAACAGCAGGCC.............................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AACTCGTAGAATCCCCAGAACAGCAGGC............................... 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
....................GCCTCTTTTCCGATTGT..................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGAACCGTCCATGCTG..................................................................... 16 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGTAGAATCCCCAGAACAGCAGGC............................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTGTGACCCGTCCATGCTGC.................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................ACTCGTAGAATCCCCAGAACAGCAGGC............................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGCCGCCGATGCAACTCGTAGAATCCCC........................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GACCCGTCCATGCTGT.................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATCTTTTTGTGTGACCCGTCCATGCTG..................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................GTTGTGTTAACCTAACCC.................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TCGTAGAATCCCCAGAACAGCAGGCCAG............................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTGTGACCCGTCCATGCTGCCGC................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................TTCCGATTGTTGTTGTGTTAACCTAAC.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CATGCAACTCGTAGGATC.............................................. 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0
AGTGAAGGTTTTTGTTGAGAGCCTC................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCTTTTTGTGTGACCCGTCCATGCT...................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................CTTTTTGTGTGACCCGTCCATG........................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................TTATATGATGATAATA............................................................................................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TGTCCCGTCCATGCTG..................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGACCCGTCCATGCTG..................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GAACCGTCCATGCTG..................................................................... 15 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CATGCAACTCGTAGA................................................. 15 1 15 0.33 5 5 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGAACAGCACGCCAGC........................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCCCCGTCCATGCTG..................................................................... 15 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GTCCCGTCCATGCTG..................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GGCCCGTCCATGCTG..................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATGCAACGCGTAGAA................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................AAGACCCGTCCATGCTG..................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GTCTCCCGTCCATGCTG..................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GATCCGTCCATGCTG..................................................................... 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CTTGTTCCCCGGATCTTTT......................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1
.................................TTGTTGTTGGGTTAGCCT....................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................GAGCCGTCCATGCTG..................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CATGCAACTCGTAGGACC.............................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGACCGGTCCATGCTG..................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCACTTCCAAAAACAACTCTCGGAGAAAAGGCTAACAACAACACAATTGGATTGGGGTTCCAATATACTACTATTATTGATTTGATTAAGTTCATTGAACACGTAAAGAAACAGAAAAAAGAAAGAGAGAGAGAGAGAAAGAGAAGAAGGGGACTAGAAAAACACACTGGGCAGGTACGACGGCGGCTACGTTGAGCATCTTAGGGGTCTTGTCGTCCGGTCGGCGGTTAGCGGTCTCTTCGTCGGTCAG
*********************************************************************.(((((((((...................................................................................................)))).))).))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
...............................CTAACAACACCACCATTTGAT...................................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0
.............................................................................................................................................................................GGTACCACGTCGGCTAGGTTGAG...................................................... 23 3 2 0.50 1 0 1 0 0 0
..................................................ATTGGGATTCCAATA......................................................................................................................................................................................... 15 1 3 0.33 1 0 0 1 0 0
...................................................................CTACTATTGGTGATGTGATT................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0
......................................................................................................................................................................................GCGAGTACGTTGAGCAT................................................... 17 2 8 0.13 1 0 1 0 0 0
.............................................................................................................................................................AAAAAGACACTGCGCAGGTT......................................................................... 20 3 10 0.10 1 0 0 0 0 1
...................................................................................................................AAAAAGAAAAAAAGTGAGAGAGAA............................................................................................................... 24 3 13 0.08 1 0 1 0 0 0
............................................................................................................................................................................GGGTACGACCGCGGCTACGA.......................................................... 20 3 13 0.08 1 0 0 1 0 0
................................................................................................................................................................................................................................CGGTGAGCAGTCGCTTCGTC...... 20 3 14 0.07 1 0 1 0 0 0
.....................................................................................................................................................................................ACCGGGTACGTTGAGCATC.................................................. 19 3 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 12:28 AM