dsi_30422

Name	Class	Family	Strand
Gypsy-21_DWil-I-int	LTR	Gypsy	-

TCCAGATGTAGCGTCTGTAACGGTTGACCTCCTGTGTCCATACAATTCAGGTAACCCTCCTGCTTACCAATCTTCTTATTGGTCATTATGCACTTTTTGCATGTGGCGATAACCTGTGACACCTTTCGTTCCATGTCCATCTACTTGCGCTTCAGTTATAACCCTATGCTACAATAGTTTTCAAGTGCCTTTTCAAACTCTACTCCTCTGTATTTTCTGTATACCGCTTAGCCATCGATTACAAACTAATGGTTTCTTCTTAAATATTCCTGGACAACAAG ************************************************...............((((((......))))))......((((((...((.(((((((......((((((......(((.................))).....))))))......)))))))...))....)))))).....................((((.......)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
TCCAGATGTAGCGTCTGTAACGGT.................................................................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
........................................................................................................................................................................................................TACTCCTCTGTATTTTCTGTATACCGCT.....................................................	28	0	2	0.50	1	0	1	0	0	0
....................................................................AATCTTCGTATTGGGCATT..................................................................................................................................................................................................	19	2	4	0.25	1	0	0	1	0	0
..........................................................................................................................CTTTCGTTCCGTGTCCTGCT...........................................................................................................................................	20	3	11	0.09	1	0	0	0	1	0
....................................................................AATCTTCGTATTGGGCATTT.................................................................................................................................................................................................	20	3	17	0.06	1	0	0	1	0	0
......................................CAGAGAATTCAGGTAACCA................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

AGGTCTACATCGCAGACATTGCCAACTGGAGGACACAGGTATGTTAAGTCCATTGGGAGGACGAATGGTTAGAAGAATAACCAGTAATACGTGAAAAACGTACACCGCTATTGGACACTGTGGAAAGCAAGGTACAGGTAGATGAACGCGAAGTCAATATTGGGATACGATGTTATCAAAAGTTCACGGAAAAGTTTGAGATGAGGAGACATAAAAGACATATGGCGAATCGGTAGCTAATGTTTGATTACCAAAGAAGAATTTATAAGGACCTGTTGTTC ************************************************...............((((((......))))))......((((((...((.(((((((......((((((......(((.................))).....))))))......)))))))...))....)))))).....................((((.......)))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR902009 testis	M023 head	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
...........................................................................................................CTATTGGAGATTGTGGAA............................................................................................................................................................	18	2	4	4.00	16	8	8	0	0	0	0	0	0	0
......................................................GGGAGGACGAAAGGTCAGAA...............................................................................................................................................................................................................	20	2	3	0.67	2	0	0	2	0	0	0	0	0	0
...........................................................................................................CTATTGGAGATTGTGGAAG...........................................................................................................................................................	19	3	17	0.59	10	7	3	0	0	0	0	0	0	0
.....................................................................TAGAAGAATAACCAGTAATA................................................................................................................................................................................................	20	0	2	0.50	1	0	0	0	1	0	0	0	0	0
...........................GGTGCACACAGGAATGTTAAGT........................................................................................................................................................................................................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0	0
.....................CCAAGGGGACGACACAGGTAT...............................................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	0	0	0	1	0	0	0
..........................................................................................................GCTATTGGAGATTGTGGAAG...........................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCACGGAAACATATGAGATG..............................................................................	20	3	7	0.14	1	0	0	0	0	0	0	0	1	0
................................................TCCGATGAGAGGACGAATG......................................................................................................................................................................................................................	19	3	9	0.11	1	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................GAAGTCAATATTAGG.....................................................................................................................	15	1	10	0.10	1	0	0	1	0	0	0	0	0	0
AGGTCTACATGGCAGACTA......................................................................................................................................................................................................................................................................	19	3	11	0.09	1	0	0	0	0	1	0	0	0	0
...................TGGCAACTGGAGGAC.......................................................................................................................................................................................................................................................	15	1	14	0.07	1	0	0	0	0	0	0	0	0	1
..................................ACAGGTATGTAAAGT........................................................................................................................................................................................................................................	15	1	16	0.06	1	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGGCAATAGGTAGCTAATG.......................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0
......................................................................AGTAGAATAACCAGCAA..................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0	0
......................................................................CGAAGTATAACCAGTGATA................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:22785199-22785479 +	dsi_30422	TCCAGATGTAGCGTCTGTAACGGTTGACCTCCTGTGTCCATACAATTCAGGTAACCCTCCTGCTTACCAATCTTCTTATTGGTCATTATGCACTTTTTGCATGTGGCGATAACCTGTGACACCTTTCGTTCCATGT--------------------------------------------------------------------------CCATCTACTTGCGCTTCAGTTATAACCCTATGCTACAATAGTTTTC---------------------AAGTGCCTTTTCAAACTCTAC--TCCTCTGTATTTTCTGTATACCGCTTAGCCATCGATTACAAACTAATGGTTTCTTCTTAAATATTCCTGGACAACAAG
droSec2	scaffold_41:197004-197175 +		TCCAGATGTAGCGTCTGTAACGGTTGACCTCCTGTGTCCATCCAATTCAGGTAACC-TCCTGCTTACCAATCTTCTTATTGGTCATTATGCACTTTTTGCATGTGGCGATAACCTGTGACACCTTTCGTTCCATGT--------------------------------------------------------------------------CCACCTGCTTGCGCTTCAGTTATAACCCTATGCTACA-----------------------------------------------------------------------------------------------------------------------------------
dm3	chr3L:23281052-23281207 +		TCCAAATGTAGCTTCTGTAACTGTTGAACTCCTGTGTCGATACAATTCAGGTAACCCTCCTGCTTAACAATCTTCTTATGGGTCATTATGTATTTTTTGCATGTGGCAATAATCAGTGACACCTTTCGTTCAATGT--------------------------------------------------------------------------CCATCTGCTTGGGCTTGGGT----------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:22123689-22123916 -		TCCAGGTACAGCGTCTGTAACGGCTGATCTCCTTTGTCGCTACAATTCAGGTAACCCTCCTGTTAACCAACCTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAAGCTGTGTATCCTTTCCTTTTATGTGC------------------GGGATA-AAAAATGCTGTTGCAGGCTGTGCATCGTCTTCGTTAGTGCAAAGTGTCCATATACATGGGCTTCAGTTATAATCTCATGCTCCA-----------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chr2L_random_031:18366-18667 +		TCCAGATTCAGCGTCTGTAACGGTTGACCGCCTTTGTCTATACAGTTCAGGTAACCCTCCTGCTTACCAATTTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAACCTGTGCCACCTTCCGTTCGATGTGC------------------GGGATAAAAAAATGCTATTGCAGGCTGTGCATCGTCTTTGTTATTGCAAAGTGTCCATCTGTATGGGCTTCAGTTATAATCTCATGCTCCA-TAGCCTTAGGTACGAGAAGATCAGAAGAAGATTGCATTATTAAACTCGTCCATCCGTTGTGCTTTCTTTATAC---------------------------------------------------------
droEug1	scf7180000409835:9899-10034 -		TCGACGTGGAGGGTTGATAACGGCTTATCTCCCTTGTCTATGCAATGCAAGTAATCTTCTTGTTTTCCGAGTTTTCTATTGTGGGTTATACACTCGATGCAATTTGCAATAACTTCCGTCACTTTTTTGTCTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302377:225264-225393 +		TCTA-ATGAAGAGTAAGCAGTGGTTTATCTCATTTGTCAATGCAATACAGCTGGCCTTCTTTCTTTCCAACCTTCTTGTTTATCATGATTCATTTCACGCAGTTGTTGATGACTTGAACTACTTTCGTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414359:3102-3237 -		TCTATATGGAGCGTGTGCAGTGGGCAGTCTCCTTTTCCAATGCAGTACAACTGACCTTCCTGTTTTCCCAGCTTTTTGTTGCACATAAGGCACTTTATGCAAGACTTGATAATTTGTGCAACCTTGCGTTCTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000488851:6775-6906 +		TCAACTTGCAGCGTATGAAGCGGCTGATCACCTTTTTCAATACAGTTTAAAAGTCCTTCTCTTTTACCGAGTTTCTTGTTA-AAATTATGCATCTTACGCAGTTGCTTACAACCTGCTAAACCTTTTGCTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000776640:3760-3883 +		TCTAGATGCAACTTCTGTAAGGGTAAACCTCCTTTGTCTAT-----------AACCCTCGCGCTAACCAATATTTTTGTTGTTCATTATGCACTTT-TGCATGTGTCAATACCGTGTGACACCTTTGGGTCCATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453241:9859-9994 +		TCTATATGGAGCGTGTGCAGTGGGTAGTCTCCTTTTTCAATGCAGTACAACTGACCTTCCTGTTTTCCCAGCTTTTTGTTGCATATAATGCACTTTATGCAAGACTTAATAATTTTTGCAACCTTGCTTTCTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000298501:8076-8210 -		-CTAAATGCAGCGTCTGTAACGGTTGACCTCCTTTGTCTATGCAATTCAGATTACCTTCCTGTTTACCAGTCTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAACCTGGGACACCTTTCGTTCCATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13250:594368-594500 +		TCTACGTGTATGGTGTGTAACGGTTCTACTCCTTTGTCGATACTGTGAAGGAATCCCTCTTTCTTGCCCAATTTTTTGTTGTAGATGATGCATTTGATACAGTTATTGATGACCTTAGCCACCTTTCCTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395510:25185-25317 +		TCAACATGCAGCGTGTGAAGGGGTTGATCACCTTTATCGATGCAGTTTAAGAACCCTTCTTTCTTGCCAAGTTTCTTGTTGAAAATTATGCATCTTATACAATTGTTCACAACCTGCTGAACTTTTTGCTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_469:10071-10206 +		TCCACGTGTACAGTATACAGCGGCTGTGATCCTTTGTCAATTTGATGCAGAAATCCCTCTTTTTTGCCAAGCTTTTTGTTGTAGATTATACATTTCATACAGTTTCCTATGATCTGAATTACTTTTCCTTCCATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_488:498-630 +		TCCACGTGTATAGTATACAGCGGCTGTGATCCTTTGTCAATTTGATGCAGAAATCCCTCTTTTTTGCCAAGCTTTTTGTTGTAGATTATACATTTCATACAGTTTCCTATGATCTGAATTACTTTTCCTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004954:1785022-1785273 -		TCCACATGTACCGTTTCTAATGGTCTATCTCCTTTGTCTATCACCTGCATTAATCCTTCCTTTTTGCCGAACTTTTTAAATAAAATAATGAATTTGACGCAGTTATGAATAATTCGGGCCACTTTTGACTATAAATCTATCATTACCGCCAACCGTTTTCTA-AAAAAAACAACCCCTTTTTGTTTATTGTCTACTTAAATGC-------------------------------------------------------------------------------------------------------------------------TGCGCAATCTGTTACAACCTTAAACTTGATGCCCGAAACATATTGCC----GAA
droVir3	scaffold_13324:1471588-1471723 +		TCAACATAAAAGGTTTGCAATGGCTGAGTTCCTTTGTCAATACAACATAGATACCCATCCTGCTTTCCAAGTTTTTTGTTATTAATTATGCATTTTATGCACGTACGGACTACTTGTGTTACCTTACGTTTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6377:38640-38771 -		TCAACGTGTAATGTGGTCAATGGAGCTTCTCCTTTGTCAATACAATGTAAAAAGTCCTCCTGTTTTCCGAGCTTCTGGTTGTGTGTGATGCACTGTATGCAGTTAGAAATAAACTGCCCGATTTTTCTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCCAGATGTAGCGTCTGTAACGGTTGACCTCCTGTGTCCATACAATTCAGGTAACCCTCCTGCTTACCAATCTTCTTATTGGTCATTATGCACTTTTTGCATGTGGCGATAACCTGTGACACCTTTCGTTCCATGT--------------------------------------------------------------------------CCATCTACTTGCGCTTCAGTTATAACCCTATGCTACAATAGTTTTC---------------------AAGTGCCTTTTCAAACTCTAC--TCCTCTGTATTTTCTGTATACCGCTTAGCCATCGATTACAAACTAATGGTTTCTTCTTAAATATTCCTGGACAACAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
TCCAGATGTAGCGTCTGTAACGGT..................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TAC--TCCTCTGTATTTTCTGTATACCGCT.....................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TCCAGATGTAGCGTCTGTAACGGTTGACCTCCTGTGTCCATCCAATTCAGGTAACC-TCCTGCTTACCAATCTTCTTATTGGTCATTATGCACTTTTTGCATGTGGCGATAACCTGTGACACCTTTCGTTCCATGT--------------------------------------------------------------------------CCACCTGCTTGCGCTTCAGTTATAACCCTATGCTACA-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TCCAAATGTAGCTTCTGTAACTGTTGAACTCCTGTGTCGATACAATTCAGGTAACCCTCCTGCTTAACAATCTTCTTATGGGTCATTATGTATTTTTTGCATGTGGCAATAATCAGTGACACCTTTCGTTCAATGT--------------------------------------------------------------------------CCATCTGCTTGGGCTTGGGT----------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....ATGTAGCTTCTGTAACTGTTG................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TAATCAGTGACACCTTTCGTT........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................CAATAATCAGTGACACCTTTCG..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CTTTCGTTCAATGT--------------------------------------------------------------------------CCATCTG.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGTAACTGTTGAACTCCTGTGT.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGTAACTGTTGAACTCCTGTGTCGA..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TTCTTATGGGTCATTATGTATTTTT.........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAATGT--------------------------------------------------------------------------CCATCTGCTTGGGCT.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AATGTAGCTTCTGTAACTGT..................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TAACTGTTGAACTCCTGT.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACTGTTGAACTCCTGTGTCGA..................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........GCTTCTGTAACTGTTGAACTCCTGTGT.....................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCCAGGTACAGCGTCTGTAACGGCTGATCTCCTTTGTCGCTACAATTCAGGTAACCCTCCTGTTAACCAACCTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAAGCTGTGTATCCTTTCCTTTTATGTGC------------------GGGATA-AAAAATGCTGTTGCAGGCTGTGCATCGTCTTCGTTAGTGCAAAGTGTCCATATACATGGGCTTCAGTTATAATCTCATGCTCCA-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................TGCATGTGGCGATAAGCTGTGTATCCTT.............................................................................................................................................................................................................................................................	28	1	22.00	22	0	0	0	0	0	0	22

droYak3

TCCAGATTCAGCGTCTGTAACGGTTGACCGCCTTTGTCTATACAGTTCAGGTAACCCTCCTGCTTACCAATTTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAACCTGTGCCACCTTCCGTTCGATGTGC------------------GGGATAAAAAAATGCTATTGCAGGCTGTGCATCGTCTTTGTTATTGCAAAGTGTCCATCTGTATGGGCTTCAGTTATAATCTCATGCTCCA-TAGCCTTAGGTACGAGAAGATCAGAAGAAGATTGCATTATTAAACTCGTCCATCCGTTGTGCTTTCTTTATAC---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................TCCTGCTTACCAATTTTCTTATTGGTCA.....................................................................................................................................................................................................................................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TCGACGTGGAGGGTTGATAACGGCTTATCTCCCTTGTCTATGCAATGCAAGTAATCTTCTTGTTTTCCGAGTTTTCTATTGTGGGTTATACACTCGATGCAATTTGCAATAACTTCCGTCACTTTTTTGTCTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCTA-ATGAAGAGTAAGCAGTGGTTTATCTCATTTGTCAATGCAATACAGCTGGCCTTCTTTCTTTCCAACCTTCTTGTTTATCATGATTCATTTCACGCAGTTGTTGATGACTTGAACTACTTTCGTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTATATGGAGCGTGTGCAGTGGGCAGTCTCCTTTTCCAATGCAGTACAACTGACCTTCCTGTTTTCCCAGCTTTTTGTTGCACATAAGGCACTTTATGCAAGACTTGATAATTTGTGCAACCTTGCGTTCTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAACTTGCAGCGTATGAAGCGGCTGATCACCTTTTTCAATACAGTTTAAAAGTCCTTCTCTTTTACCGAGTTTCTTGTTA-AAATTATGCATCTTACGCAGTTGCTTACAACCTGCTAAACCTTTTGCTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTAGATGCAACTTCTGTAAGGGTAAACCTCCTTTGTCTAT-----------AACCCTCGCGCTAACCAATATTTTTGTTGTTCATTATGCACTTT-TGCATGTGTCAATACCGTGTGACACCTTTGGGTCCATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTATATGGAGCGTGTGCAGTGGGTAGTCTCCTTTTTCAATGCAGTACAACTGACCTTCCTGTTTTCCCAGCTTTTTGTTGCATATAATGCACTTTATGCAAGACTTAATAATTTTTGCAACCTTGCTTTCTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-CTAAATGCAGCGTCTGTAACGGTTGACCTCCTTTGTCTATGCAATTCAGATTACCTTCCTGTTTACCAGTCTTCTTATTGGTCATTATGCACTTTATGCATGTGGCGATAACCTGGGACACCTTTCGTTCCATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCTACGTGTATGGTGTGTAACGGTTCTACTCCTTTGTCGATACTGTGAAGGAATCCCTCTTTCTTGCCCAATTTTTTGTTGTAGATGATGCATTTGATACAGTTATTGATGACCTTAGCCACCTTTCCTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................TGATACAGTTATTGATGACCTTAGCC..................................................................................................................................................................................................................................................................	26	19	0.95	18	1	16	1	0	0	0
.................TAACGGTTCTACTCCTTTGTCGATAC...............................................................................................................................................................................................................................................................................................................................................	26	14	0.57	8	7	1	0	0	0	0
..............................................................................................TGATACAGTTATTGATGACCTTAGC...................................................................................................................................................................................................................................................................	25	19	0.32	6	0	4	2	0	0	0
.................TAACGGTTCTACTCCTTTGTCGATACT..............................................................................................................................................................................................................................................................................................................................................	27	14	0.21	3	2	1	0	0	0	0
..................AACGGTTCTACTCCTTTGTCGATAC...............................................................................................................................................................................................................................................................................................................................................	25	14	0.14	2	0	2	0	0	0	0
.................TAACGGTTCTACTCCTTTGTCGATACTG.............................................................................................................................................................................................................................................................................................................................................	28	14	0.14	2	2	0	0	0	0	0
..............................................................................................TGATACAGTTATTGATGACCTTAGCCAC................................................................................................................................................................................................................................................................	28	18	0.11	2	1	1	0	0	0	0
.................................................................................................TACAGTTATTGATGACCTTAGCCACC...............................................................................................................................................................................................................................................................	26	20	0.10	2	1	1	0	0	0	0
........................................TACTGTGAAGGAATCCCTCTTTCTTGCCC.....................................................................................................................................................................................................................................................................................................................	29	12	0.08	1	1	0	0	0	0	0
..................................TGTCGATACTGTGAAGGAATCCCTCC..............................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
...............TGTAACGGTTCTACTCCTTTGTCGATAC...............................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	1	0	0	0	0	0
............................................................................TGTTGTAGATGATGCATTTGATACAGT...................................................................................................................................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
..............................................................................................TGATACAGTTATTGATGACCTTAGCCACC...............................................................................................................................................................................................................................................................	29	18	0.06	1	1	0	0	0	0	0
.............................................................................................TTGATACAGTTATTGATGACCTTAGCC..................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0
..............................................................................................TGATACAGTTATTGATGACCTTAG....................................................................................................................................................................................................................................................................	24	19	0.05	1	0	0	1	0	0	0
...............................................................................................GATACAGTTATTGATGACCTTAGCC..................................................................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0
............................................................................................TTTGATACAGTTATTGATGACCTTAGC...................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0
..............................................................................................TGATACAGTTATTGATGACCTTAGCCA.................................................................................................................................................................................................................................................................	27	19	0.05	1	0	0	1	0	0	0
.....................................................................................................GTTATTGATGACCTTAGCC..................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...................................................................CCAATTTTTTGTTGTAGATGATGCATT............................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.................................................................GCCCAATTTTTTGTTGTAGATGATGC...............................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.......................................................................................................TATTGATGACCTTAGCCACCTTTCC..........................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droBip1

TCAACATGCAGCGTGTGAAGGGGTTGATCACCTTTATCGATGCAGTTTAAGAACCCTTCTTTCTTGCCAAGTTTCTTGTTGAAAATTATGCATCTTATACAATTGTTCACAACCTGCTGAACTTTTTGCTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCCACGTGTACAGTATACAGCGGCTGTGATCCTTTGTCAATTTGATGCAGAAATCCCTCTTTTTTGCCAAGCTTTTTGTTGTAGATTATACATTTCATACAGTTTCCTATGATCTGAATTACTTTTCCTTCCATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................TTTCATACAGTTTCCTATGATCTGAAT...................................................................................................................................................................................................................................................................	27	15	8.13	122	0	113	4	0	1	0	0	4	0	0
...........................................................................................................TATGATCTGAATTACTTTTCCTTCCA.....................................................................................................................................................................................................................................................	26	15	2.13	32	0	3	0	0	0	0	0	28	1	0
.................................TTGTCAATTTGATGCAGAAATCCCTC...............................................................................................................................................................................................................................................................................................................................	26	18	2.11	38	0	33	2	0	2	0	0	1	0	0
...........................................................................................................TATGATCTGAATTACTTTTCCTTCCAT....................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.................................TTGTCAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	24	18	1.50	27	0	24	2	0	0	0	1	0	0	0
.................................TTGTCAATTTGATGCAGAAATCCCTCTT.............................................................................................................................................................................................................................................................................................................................	28	18	1.39	25	0	21	3	0	0	0	0	0	1	0
.................................TTGTCAATTTGATGCAGAAATCCCT................................................................................................................................................................................................................................................................................................................................	25	18	1.33	24	0	20	3	0	0	0	0	0	1	0
.................................TTGTCAATTTGATGCAGAAATCCCTCT..............................................................................................................................................................................................................................................................................................................................	27	18	1.28	23	0	16	2	0	1	0	0	4	0	0
.................................TTGTCAATTTGATGCAGAAATCCCTCTTT............................................................................................................................................................................................................................................................................................................................	29	18	1.22	22	0	20	2	0	0	0	0	0	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTCCT.........................................................................................................................................................................................................................................................	25	15	1.13	17	0	1	0	0	0	0	0	10	6	0
...........................................................................................................TATGATCTGAATTACTTTTCCTTCC......................................................................................................................................................................................................................................................	25	15	1.07	16	0	0	1	0	0	0	0	13	2	0
........................................................................................................TCCTATGATCTGAATTACTTTTCCTTCCAT....................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAA....................................................................................................................................................................................................................................................................	26	15	0.87	13	0	13	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAA.....................................................................................................................................................................................................................................................................................................................................	24	18	0.83	15	0	14	0	0	0	0	0	1	0	0
.............................TCCTTTGTCAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	28	18	0.83	15	0	13	2	0	0	0	0	0	0	0
........................TGTGATCCTTTGTCAATTTGATGCA.........................................................................................................................................................................................................................................................................................................................................	25	17	0.82	14	0	14	0	0	0	0	0	0	0	0
...........................................................................................................TATGATCTGAATTACTTTTCCTTC.......................................................................................................................................................................................................................................................	24	15	0.80	12	0	0	0	0	0	0	0	12	0	0
........................TGTGATCCTTTGTCAATTTGATGCAG........................................................................................................................................................................................................................................................................................................................................	26	17	0.76	13	0	13	0	0	0	0	0	0	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTCCTT........................................................................................................................................................................................................................................................	26	15	0.73	11	0	1	0	0	0	0	0	10	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTG......................................................................................................................................................................................................................................................................	24	20	0.65	13	0	12	1	0	0	0	0	0	0	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGA.....................................................................................................................................................................................................................................................................................................	23	16	0.63	10	0	1	0	0	0	0	1	6	2	0
............................................................................................TTTCATACAGTTTCCTATGATCTGA.....................................................................................................................................................................................................................................................................	25	15	0.60	9	0	9	0	0	0	0	0	0	0	0
......................................................................................................TTTCCTATGATCTGAATTACTTTTCCT.........................................................................................................................................................................................................................................................	27	15	0.53	8	0	2	0	0	0	0	0	6	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTCCTTC.......................................................................................................................................................................................................................................................	27	15	0.47	7	0	0	0	0	0	0	0	5	2	0
...........................................................................................................TATGATCTGAATTACTTTTCCTT........................................................................................................................................................................................................................................................	23	15	0.47	7	0	0	0	0	0	0	0	7	0	0
............................................................................................TTTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	22	20	0.45	9	0	8	1	0	0	0	0	0	0	0
..........................................TGATGCAGAAATCCCTCTTTTTTGC.......................................................................................................................................................................................................................................................................................................................	25	18	0.44	8	0	7	1	0	0	0	0	0	0	0
........................TGTGATCCTTTGTCAATTTGATGCAGA.......................................................................................................................................................................................................................................................................................................................................	27	17	0.41	7	0	7	0	0	0	0	0	0	0	0
............................................................................TGTTGTAGATTATACATTTCATAC......................................................................................................................................................................................................................................................................................	24	18	0.39	7	0	1	0	0	0	0	0	2	4	0
............................................................................TGTTGTAGATTATACATTTCATA.......................................................................................................................................................................................................................................................................................	23	18	0.39	7	0	0	0	0	0	0	0	2	5	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGAT....................................................................................................................................................................................................................................................................................................	24	16	0.38	6	0	4	0	0	0	0	0	2	0	0
............................................................................................TTTCATACAGTTTCCTATGATCT.......................................................................................................................................................................................................................................................................	23	20	0.35	7	0	6	0	0	1	0	0	0	0	0
..................................TGTCAATTTGATGCAGAAATCCCTCTTT............................................................................................................................................................................................................................................................................................................................	28	18	0.33	6	0	6	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGATTA..................................................................................................................................................................................................................................................................................................	24	15	0.33	5	0	3	0	0	0	0	0	0	2	0
..........................TGATCCTTTGTCAATTTGATGCAGAAA.....................................................................................................................................................................................................................................................................................................................................	27	17	0.29	5	0	4	0	0	0	0	0	0	1	0
..................................TGTCAATTTGATGCAGAAATCCCTCTT.............................................................................................................................................................................................................................................................................................................................	27	18	0.28	5	0	5	0	0	0	0	0	0	0	0
........................TGTGATCCTTTGTCAATTTGATG...........................................................................................................................................................................................................................................................................................................................................	23	18	0.28	5	0	5	0	0	0	0	0	0	0	0
............................................................................TGTTGTAGATTATACATTTCATACAGT...................................................................................................................................................................................................................................................................................	27	18	0.28	5	0	0	0	0	0	0	0	5	0	0
.................................TTGTCAATTTGATGCAGAAATCC..................................................................................................................................................................................................................................................................................................................................	23	18	0.28	5	0	3	1	0	0	0	0	0	1	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGATTA..................................................................................................................................................................................................................................................................................................	26	15	0.27	4	0	3	0	0	0	0	1	0	0	0
.............................................................................................TTCATACAGTTTCCTATGATCTGAAT...................................................................................................................................................................................................................................................................	26	15	0.27	4	0	4	0	0	0	0	0	0	0	0
.........................................................TCTTTTTTGCCAAGCTTTTTGTTG.........................................................................................................................................................................................................................................................................................................	24	15	0.27	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................TCATACAGTTTCCTATGATCTGAAT...................................................................................................................................................................................................................................................................	25	15	0.27	4	0	4	0	0	0	0	0	0	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAAA...................................................................................................................................................................................................................................................................	27	15	0.27	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................TGATCTGAATTACTTTTCCTTCCA.....................................................................................................................................................................................................................................................	24	15	0.27	4	0	0	0	0	0	0	0	4	0	0
.............................................................................................................TGATCTGAATTACTTTTCCTTCC......................................................................................................................................................................................................................................................	23	15	0.27	4	0	0	0	0	0	0	0	4	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTCC..........................................................................................................................................................................................................................................................	24	15	0.27	4	0	0	0	0	0	0	0	2	2	0
........................TGTGATCCTTTGTCAATTTGATGC..........................................................................................................................................................................................................................................................................................................................................	24	17	0.24	4	0	3	0	0	1	0	0	0	0	0
............................................................................TGTTGTAGATTATACATTTCATACA.....................................................................................................................................................................................................................................................................................	25	18	0.22	4	0	0	0	0	0	0	0	4	0	0
................................TTTGTCAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	25	18	0.22	4	0	4	0	0	0	0	0	0	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAAAA..................................................................................................................................................................................................................................................................	28	15	0.20	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................CAGTTTCCTATGATCTGAATTACTTT.............................................................................................................................................................................................................................................................	26	15	0.20	3	0	0	0	0	0	0	0	2	1	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGATTAA.................................................................................................................................................................................................................................................................................................	27	15	0.20	3	0	0	0	0	0	0	0	3	0	0
..............................................................................................TCATACAGTTTCCTATGATCTGA.....................................................................................................................................................................................................................................................................	23	15	0.20	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTCCTTCC......................................................................................................................................................................................................................................................	28	15	0.20	3	0	0	0	0	0	0	0	3	0	0
........................................................................................................TCCTATGATCTGAATTACTTTTC...........................................................................................................................................................................................................................................................	23	15	0.20	3	0	0	0	0	0	0	0	2	1	0
...........................................................................................................TATGATCTGAATTACTTTTCCT.........................................................................................................................................................................................................................................................	22	15	0.20	3	0	0	0	0	0	0	0	0	3	0
............................................................TTTTTGCCAAGCTTTTTGTTGTAGA.....................................................................................................................................................................................................................................................................................................	25	16	0.19	3	0	0	0	0	0	0	0	3	0	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGATT...................................................................................................................................................................................................................................................................................................	25	16	0.19	3	0	2	0	0	0	0	1	0	0	0
...............TACAGCGGCTGTGATCCTTTGTCA...................................................................................................................................................................................................................................................................................................................................................	24	17	0.18	3	0	3	0	0	0	0	0	0	0	0
...............................................................................TGTAGATTATACATTTCATACAGTT..................................................................................................................................................................................................................................................................................	25	18	0.17	3	0	1	0	0	0	0	0	2	0	0
...........................................................................TTGTTGTAGATTATACATTTCATACAG....................................................................................................................................................................................................................................................................................	27	18	0.17	3	0	1	0	0	0	0	0	2	0	0
............................................................................TGTTGTAGATTATACATTTCATACAG....................................................................................................................................................................................................................................................................................	26	18	0.17	3	0	1	0	0	0	0	0	2	0	0
..................................TGTCAATTTGATGCAGAAATCCCTC...............................................................................................................................................................................................................................................................................................................................	25	18	0.17	3	0	3	0	0	0	0	0	0	0	0
........................................TTTGATGCAGAAATCCCTCTTTTT..........................................................................................................................................................................................................................................................................................................................	24	18	0.17	3	0	3	0	0	0	0	0	0	0	0
..........................................TGATGCAGAAATCCCTCTTTTTTG........................................................................................................................................................................................................................................................................................................................	24	18	0.17	3	0	2	1	0	0	0	0	0	0	0
..........................................TGATGCAGAAATCCCTCTTTTT..........................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................CATACAGTTTCCTATGATCTGAAT...................................................................................................................................................................................................................................................................	24	15	0.13	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................TTTCCTATGATCTGAATTACTTTTCC..........................................................................................................................................................................................................................................................	26	15	0.13	2	0	0	0	0	0	0	0	2	0	0
.....................................................TCCCTCTTTTTTGCCAAGCTTTTTGTTG.........................................................................................................................................................................................................................................................................................................	28	15	0.13	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................GTTTCCTATGATCTGAATTAC................................................................................................................................................................................................................................................................	21	15	0.13	2	0	0	0	0	0	0	0	2	0	0
..............................................................TTTGCCAAGCTTTTTGTTGTAG......................................................................................................................................................................................................................................................................................................	22	16	0.13	2	0	0	0	0	1	0	1	0	0	0
.............................................................TTTTGCCAAGCTTTTTGTTGTAGAT....................................................................................................................................................................................................................................................................................................	25	16	0.13	2	0	0	2	0	0	0	0	0	0	0
.........................GTGATCCTTTGTCAATTTGATGC..........................................................................................................................................................................................................................................................................................................................................	23	17	0.12	2	0	2	0	0	0	0	0	0	0	0
...............TACAGCGGCTGTGATCCTTTGTCAAT.................................................................................................................................................................................................................................................................................................................................................	26	17	0.12	2	0	1	1	0	0	0	0	0	0	0
........................TGTGATCCTTTGTCAATTTGATGCAGAAA.....................................................................................................................................................................................................................................................................................................................................	29	17	0.12	2	0	2	0	0	0	0	0	0	0	0
...............TACAGCGGCTGTGATCCTTTGTCAATT................................................................................................................................................................................................................................................................................................................................................	27	17	0.12	2	0	2	0	0	0	0	0	0	0	0
.................................TTGTCAATTTGATGCAGAAATCCCTCTAA............................................................................................................................................................................................................................................................................................................................	29	18	0.11	2	0	0	0	0	0	0	0	2	0	0
..................................TGTCAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAATCC..................................................................................................................................................................................................................................................................................................................................	27	18	0.11	2	0	0	2	0	0	0	0	0	0	0
.............................................................................GTTGTAGATTATACATTTCATACAGTT..................................................................................................................................................................................................................................................................................	27	18	0.11	2	0	0	0	0	0	0	0	2	0	0
..............................CCTTTGTCAATTTGATGCAGAAA.....................................................................................................................................................................................................................................................................................................................................	23	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...........................................................................TTGTTGTAGATTATACATTTCATA.......................................................................................................................................................................................................................................................................................	24	18	0.11	2	0	0	0	0	0	0	0	0	2	0
................................TTTGTCAATTTGATGCAGAAATCCCTC...............................................................................................................................................................................................................................................................................................................................	27	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAAT....................................................................................................................................................................................................................................................................................................................................	25	18	0.11	2	0	1	1	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAA......................................................................................................................................................................................................................................................................................................................................	23	18	0.11	2	0	1	0	0	0	0	0	0	1	0
........................................TTTGATGCAGAAATCCCTCTTT............................................................................................................................................................................................................................................................................................................................	22	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.................................TTGTCAATTTGATGCAGAAATCCA.................................................................................................................................................................................................................................................................................................................................	24	19	0.11	2	0	2	0	0	0	0	0	0	0	0
.........................................TTGATGCAGAAATCCCTCTTTTTC.........................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................CATTTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................TTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAATC..................................................................................................................................................................................................................................................................	28	15	0.07	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................ATGATCTGAATTACTTTTCCTT........................................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TTCCTATGATCTGAATTACTTTTCCTT........................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................TACAGTTTCCTATGATCTGA.....................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGATTAT.................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	0	0	0	0	0	1	0	0	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGATTAT.................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GTTTCCTATGATCTGAAT...................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................................TTTTTTGCCAAGCTTTTTGTTGTAGA.....................................................................................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAATA..................................................................................................................................................................................................................................................................	28	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................TTGCCAAGCTTTTTGTTGTAGATTAT.................................................................................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCTTTTTTGCCAAGCTTTTTGTTGT........................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
............................................................................................TTTCATACAGTTTCCTATGATCTGAC....................................................................................................................................................................................................................................................................	26	15	0.07	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................ATGATCTGAATTACTTTTCCTTCC......................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TTCCTATGATCTGAATTACTTTTCC..........................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGATTATA................................................................................................................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	1	0	0	0
...........................................................TTTTTTGCCAAGCTTTTTGTTGT........................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0
...........................................................TTTTTTGCCAAGCTTTTTGTTGTA.......................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGATTATACAT.............................................................................................................................................................................................................................................................................................	29	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TCATACAGTTTCCTATGATCTGAA....................................................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................TTTGCCAAGCTTTTTGTTGTAGATTATAA...............................................................................................................................................................................................................................................................................................	29	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TTCCTATGATCTGAATTACTTTTCCT.........................................................................................................................................................................................................................................................	26	15	0.07	1	0	0	0	0	0	0	0	1	0	0
.....................................................TCCCTCTTTTTTGCCAAGCTTTTTG............................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................................TCCCTCTTTTTTGCCAAGCTTTTTGT...........................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................................TTTTTGCCAAGCTTTTTGTTGTAGATT...................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................TGCAGAAATCCCTCTTTTTTGCCAAGC..................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGATT...................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................................................TTGCCAAGCTTTTTGTTGTAG......................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................GCAGAAATCCCTCTTTTTTGCCAAGC..................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................TTTGCCAAGCTTTTTGTTG.........................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGAA....................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	0	0	1	0	0	0
.............................................................TTTTGCCAAGCTTTTTGTTG.........................................................................................................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0
................................................................TGCCAAGCTTTTTGTTGTAGA.....................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	1	0	0
..............................................GCAGAAATCCCTCTTTTTTGCCAAG...................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................................................TTTTGCCAAGCTTTTTGTTGTAGA.....................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	0	0	0	0	1	0	0
............................................................TTTTTGCCAAGCTTTTTGTTGTAG......................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................TGATCCTTTGTCAATTTGATGCAGA.......................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0
....................CGGCTGTGATCCTTTGTCAATTTGAT............................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	1	0	0
..........................TGATCCTTTGTCAATTTGATGCA.........................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...........AGTATACAGCGGCTGTGATCCTTTGTCA...................................................................................................................................................................................................................................................................................................................................................	28	17	0.06	1	0	0	1	0	0	0	0	0	0	0
...................GCGGCTGTGATCCTTTGTCAATTTG..............................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................TGATCCTTTGTCAATTTGATGCAG........................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
...................GCGGCTGTGATCCTTTGTCAATTTGA.............................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	0	0	0	0	0	0	0	1	0
................ACAGCGGCTGTGATCCTTTGTCAATT................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................GTGATCCTTTGTCAATTTGATGCA.........................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................TGATCCTTTGTCAATTTGATGC..........................................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
............................................ATGCAGAAATCCCTCTTTTTTG........................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................................................TTGTTGTAGATTATACATTTCATACA.....................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	0	0	0	0	0	1	0	0
..................................TGTCAATTTGATGCAGAAATCCCTCT..............................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAATC...................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................CAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	1	0	0	0	0	0	0	0
...........................................................................TTGTTGTAGATTATACATTTCATACAGT...................................................................................................................................................................................................................................................................................	28	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAATCA..................................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................TGTCAATTTGATGCAGAAATCCCT................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................CTTTGTCAATTTGATGCAGAAA.....................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................GATCCTTTGTCAATTTGATGCAGAAAT....................................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TTGTAGATTATACATTTCATACAGT...................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	0	0	0	0	0	0	0	1	0
..........................................TGATGCAGAAATCCCTCTTTTTTGCCA.....................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................CCTTTGTCAATTTGATGCAGAAATCC..................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TTTGTTGTAGATTATACATTTCATACAG....................................................................................................................................................................................................................................................................................	28	18	0.06	1	0	0	0	0	0	0	0	0	1	0
.................................TTGTCAATTTGATGCAGAAATCCCTT...............................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................TGTCAATTTGATGCAGAAATCC..................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...........................................GATGCAGAAATCCCTCTTTTTTG........................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TTGTAGATTATACATTTCATACAGTT..................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	0	0	0	0	0	1	0	0
..........................................TGATGCAGAAATCCCTCTTTTTTGCC......................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGA.......................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
....................................TCAATTTGATGCAGAAATCCCTCTTT............................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
...............................CTTTGTCAATTTGATGCAGAAATC...................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.................................TTGTCAATTTGATGCAGAAATCCCTCC..............................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	0	1	0	0	0	0	0	0	0
......................................AATTTGATGCAGAAATCCCTCT..............................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TTTGTTGTAGATTATACATTTCATACAGT...................................................................................................................................................................................................................................................................................	29	18	0.06	1	0	0	1	0	0	0	0	0	0	0
..............................CCTTTGTCAATTTGATGCAGAAATCCC.................................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................TTTGTCAATTTGATGCAGAAATC...................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	0	1	0	0	0	0	0	0	0	0
................................TTTGTCAATTTGATGCAGAAATCCA.................................................................................................................................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TCATACAGTTTCCTATGATCT.......................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............GTATACAGCGGCTGTGATCCT.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................GATGCAGAAATCCCTCTT.............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................AGCGGCTGTGATCCTTTGTC....................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............TATACAGCGGCTGTGATCCTTTGT.....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................TTATACATTTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TACATTTCATACAGTTTCCTATGA..........................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........AGTATACAGCGGCTGTGAAA...........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TACATTTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TTCATACAGTTTCCTATGATCTG......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............ATACAGCGGCTGTGATCCTTTG......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............TACAGCGGCTGTGATCCTTTG......................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TCATACAGTTTCCTATGATCTG......................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TATACATTTCATACAGTTTCCTA.............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........AGTATACAGCGGCTGTGATCCTTTG......................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCCACGTGTATAGTATACAGCGGCTGTGATCCTTTGTCAATTTGATGCAGAAATCCCTCTTTTTTGCCAAGCTTTTTGTTGTAGATTATACATTTCATACAGTTTCCTATGATCTGAATTACTTTTCCTTCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................TTATACATTTCATACAGTTTCCTA.............................................................................................................................................................................................................................................................................	24	10	0.30	3	0	3	0	0	0	0
.............................TCCTTTGTCAATTTGATGCAGAAATCCCT................................................................................................................................................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0
......TGTATAGTATACAGCGGCTGTGATCC..........................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0
.......GTATAGTATACAGCGGCTGTGATCC..........................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0
.........................................TTGATGCAGAAATCCCTCTTT............................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0
...............TACAGCGGCTGTGATCCTTT.......................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0
.....................................................................................TTATACATTTCATACAGTTTCCTATGATC........................................................................................................................................................................................................................................................................	29	10	0.10	1	0	1	0	0	0	0
...............................................................................TGTAGATTATACATTTCATACAGTT..................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0
..........................................TGATGCAGAAATCCCTCTT.............................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0
.....................................................................................TTATACATTTCATACAGTTTCC...............................................................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0
.........ATAGTATACAGCGGCTGTGATCCT.........................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0

droWil2

TCCACATGTACCGTTTCTAATGGTCTATCTCCTTTGTCTATCACCTGCATTAATCCTTCCTTTTTGCCGAACTTTTTAAATAAAATAATGAATTTGACGCAGTTATGAATAATTCGGGCCACTTTTGACTATAAATCTATCATTACCGCCAACCGTTTTCTA-AAAAAAACAACCCCTTTTTGTTTATTGTCTACTTAAATGC-------------------------------------------------------------------------------------------------------------------------TGCGCAATCTGTTACAACCTTAAACTTGATGCCCGAAACATATTGCC----GAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................TTGTCTATCACCTGCATTAATCCTT................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.......................................................................................................TATGAATAATTCGGGCCACTTTTGACT........................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0

droVir3

TCAACATAAAAGGTTTGCAATGGCTGAGTTCCTTTGTCAATACAACATAGATACCCATCCTGCTTTCCAAGTTTTTTGTTATTAATTATGCATTTTATGCACGTACGGACTACTTGTGTTACCTTACGTTTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................TGCACGTACGGACTACTTGTGTTACCT..............................................................................................................................................................................................................................................................	27	3	1.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCAACATAAAAGGTTTGCAATGGCTGA...............................................................................................................................................................................................................................................................................................................................................................	27	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCAACATAAAAGGTTTGCAATGGCT.................................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCAACATAAAAGGTTTGCAATGGC..................................................................................................................................................................................................................................................................................................................................................................	24	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TATGCACGTACGGACTACTTGTC....................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TCAATACAACATAGATACCCATCCTG............................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CACGTACGGACTACTTGTGTTACCT..............................................................................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCAACATAAAAGGTTTGCAATGG...................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TACGGACTACTTGTGTTACCTTACGT.........................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCAACATAAAAGGTTTGCAATGGCTGAG..............................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TTCCTTTGTCAATACAACATAGATACC...................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CACGTACGGACTACTTGTGTTACC...............................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCAACGTGTAATGTGGTCAATGGAGCTTCTCCTTTGTCAATACAATGTAAAAAGTCCTCCTGTTTTCCGAGCTTCTGGTTGTGTGTGATGCACTGTATGCAGTTAGAAATAAACTGCCCGATTTTTCTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................TGTAAAAAGTCCTCCTGTTTTCCGAGC..................................................................................................................................................................................................................................................................................................................	27	1	33.00	33	21	0	0	0	12	0
TCAACGTGTAATGTGGTCAATGGAGC................................................................................................................................................................................................................................................................................................................................................................	26	1	10.00	10	1	1	0	0	5	3
.............................................TGTAAAAAGTCCTCCTGTTTTCCGAG...................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	8	0	0	0	0	0
......TGTAATGTGGTCAATGGAGCTTCTCC..........................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	3	2	0	0	1	0
........................................TACAATGTAAAAAGTCCTCCTGTTT.........................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
......TGTAATGTGGTCAATGGAGCTTCTC...........................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	1	3	0	0	0	0
.................................................................TCCGAGCTTCTGGTTGTGTGTGATGCAC.............................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	3	0
........................................................................TTCTGGTTGTGTGTGATGCACTGTA.........................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
........................................................................TTCTGGTTGTGTGTGATGCACTGT..........................................................................................................................................................................................................................................................................................	24	1	3.00	3	1	1	0	0	1	0
...........................................................................TGGTTGTGTGTGATGCACTGTATGCAGT...................................................................................................................................................................................................................................................................................	28	1	3.00	3	3	0	0	0	0	0
....................................TCAATACAATGTAAAAAGTCCTCCTG............................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
........................................TACAATGTAAAAAGTCCTCCTGTTTTC.......................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0
.............................TCCTTTGTCAATACAATGTAAAAAGTCC.................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	0	0	0	1	0
TCAACGTGTAATGTGGTCAATGGAGCT...............................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.............................................TGTAAAAAGTCCTCCTGT...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.........................................................................................GCACTGTATGCAGTTAGAAATAAAC........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
........................................................................TTCTGGTTGTGTGTGATGCACTGTATG.......................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................TACAATGTAAAAAGTCCTCCTGTT..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................CCGAGCTTCTGGTTGTGTGT....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................GTAAAAAGTCCTCCTGTTTTCCGAGC..................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............GGTCAATGGAGCTTCTCC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...........................................................................TGGTTGTGTGTGATGCACTGTATGCAG....................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................TCAATACAATGTAAAAAGTCCTCCTGT...........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................TACAATGTAAAAAGTCCTCCTGCC..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................AAGTCCTCCTGTTTTCCGAGC..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................TTTTCCGAGCTTCTGGTTGTGTGTGA..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................TCCGAGCTTCTGGTTGTGTGTGATGC...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......TGTAATGTGGTCAATGGAGCTTCTCCTT........................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................ACAATGTAAAAAGTCCTCCTGTTT.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................TGTAAAAAGTCCTCCTGTTTT........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......GTAATGTGGTCAATGGAGCTTCTCCT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........TAATGTGGTCAATGGAGCTTCTCCTT........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......GTAATGTGGTCAATGGAGCTTCTCC..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................TTCTGGTTGTGTGTGATGCACT............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
......................................................TCCTCCTGTTTTCCGAGCTTCTGGTT..........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................TACAATGTAAAAAGTCCTCCTGTTTT........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.CAACGTGTAATGTGGTCAATGGAGC................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.................................................................TCCGAGCTTCTGGTTGTGTGTGATG................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................CGAGCTTCTGGTTGTGTGTGATGCAC.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
TCAACGTGTAATGTGGTCAATGGA..................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................TGTAAAAAGTCCTCCTGTTTTCCGAGCT.................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................TGTAAAAAGTCCTCCTGTTTTCCGAGCTT................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
......................................................................................................TTAGAAATAAACTGCCCGATTTTTCTA.........................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0

dsi_30422

3l:22785249-22785429 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.1	-22.9	-22.8