dsi_30407

CDS [x_18304303_18304470_-]; exon [x_18304303_18304470_-]; intron [x_18303910_18304302_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTCGTAATCCCAGCAAGAGTTAGTTGTTCAACTTGCCATTTCAAATCCAAGTTGAGCGCCATCGCCTTCGTAGCGCATGGCCGTTTGACAACAGGTGGCAACTACGGTTGGGCGGTAAATTTGAAATGCAACCAGCGGCTATAGTTAACATTCCATTTGCATATATTCGATATAAATGCCAAATCAATGGATTC ************************************************......(((((.....((....(((((..((((((((((((((((((.........(((((((((((((((.......))).)))).))))))))...)))))))).....))))))))))..)))))....))......))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	M024 male body	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M023 head
.......TGTGCCCATCGAGTGGGAGGCCGTGG.........................................................................................................................................................................................................................	26	0	1	2.00	2	0	0	1	0	0	1	0	0
.........TGCCCATCGAGTGGGAGGCCGTGG.........................................................................................................................................................................................................................	24	0	1	2.00	2	0	2	0	0	0	0	0	0
.........................GGCCGTGGACGTGACCCC...............................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
..........GCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0
.......TGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
........GTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TAAATTTGAAATGAAACCAGG..........................................................	21	2	3	0.33	1	0	0	0	0	0	0	1	0
..............ATCGAGTGGGAGGCCGAGC.........................................................................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0	0	0	0
.......................................................................................................................GTCTTCGTAGCGCAGGG..................................................................................................................	17	2	9	0.22	2	0	0	0	0	0	0	2	0
.............................................................................................................................ATAGCGCATGGCCGT..............................................................................................................	15	1	5	0.20	1	1	0	0	0	0	0	0	0
...........................................................................................................................................TTTGACAACACGGGGAAACT...........................................................................................	20	3	7	0.14	1	0	0	1	0	0	0	0	0
.......................................................................................................................GCCTTCGTAGCTCAGGG..................................................................................................................	17	2	8	0.13	1	0	0	0	0	0	0	1	0
............................................................................................................TGGGCGCCATCCCCTTCGGA..........................................................................................................................	20	3	8	0.13	1	1	0	0	0	0	0	0	0
..........................................................................................................................TTCCTAGCGCATGGCAGTA.............................................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	0	1
................................................................................................................................GTGCATGGCCGTTTG...........................................................................................................	15	1	15	0.07	1	1	0	0	0	0	0	0	0

GGCGGTTACACGGGTAGCTCACCCTCCGGCACCTGCACTGGGGGCAGGCCCATTCACAGCATTAGGGTCGTTCTCAATCAACAAGTTGAACGGTAAAGTTTAGGTTCAACTCGCGGTAGCGGAAGCATCGCGTACCGGCAAACTGTTGTCCACCGTTGATGCCAACCCGCCATTTAAACTTTACGTTGGTCGCCGATATCAATTGTAAGGTAAACGTATATAAGCTATATTTACGGTTTAGTTACCTAAG ************************************************......(((((.....((....(((((..((((((((((((((((((.........(((((((((((((((.......))).)))).))))))))...)))))))).....))))))))))..)))))....))......))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
........................................................CAGCATTAGGGTCGTTCTCAATC...........................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0
........................................GGGGCAGGTCCATTCATA................................................................................................................................................................................................	18	2	1	1.00	1	0	0	1	0
..........................................................................................................CAACTCGCGGTAGAGGAA..............................................................................................................................	18	1	1	1.00	1	1	0	0	0
.............................................................................................................CTCGCGGTAGAGGAAG.............................................................................................................................	16	1	4	0.25	1	1	0	0	0
.............................................................................................................CCCGCGGTAGAGGAAGCTTC.........................................................................................................................	20	3	5	0.20	1	1	0	0	0
.......................................TGGGGCAGGTCCATTCA..................................................................................................................................................................................................	17	2	7	0.14	1	0	0	0	1
.............................................................................................TAAAGTTTAGGCTCAATT...........................................................................................................................................	18	2	17	0.12	2	0	0	0	2
.....................................................CCACAGGATTAAGGTCGTT..................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	2
...............................................................................................................CGCGCTAGCGGAAGCTT..........................................................................................................................	17	2	17	0.06	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:18304103-18304352 -	dsi_30407	CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCAAGA-------------------------------------------------------GTTA-GTTGTTCAACTTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGTAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGT--------TGGGCGGTAAATTTGAAA-TGCAA--------CCAGCGG----------------CTATAGTTAACATTCCATTTGCATATATTCGATATAAATGC--------------------------C-AAATCAATGGATTC
droSec2	scaffold_8:1696813-1697063 -		CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCAAGA-------------------------------------------------------GTTA-GTTGTTCAACTTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGTAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGT--------TGGGCGGTAAATTTGAAA-TGCAA--------CCAGCGG----------------CTTTAGTTAACATTCCATTTCCATATATTCGATATAAATGC--------------------------CAAGATCAATGGATTC
dm3	chrX:19414491-19414742 -		CCGCCAATGTCCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCCAGA-------------------------------------------------------GTTA-GTGGTTCAACTTGACATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGAAGCGCGTGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T--GGGCGGTAAATTTGAAA-TACAA--------CCAG--G----------------CTCTAGTTAACATTCCATTGCCATATATTCGATATAAATGC--------------------------C-AAATCAATGGATAC
droEre2	scaffold_4690:9651650-9651935 -		CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACTCCCGTTCGGGTGAGTGTC-----GTAATCCC---------GGCAAGC-------------------------------------------------------GGTA-CAAGTTCAGCTTGCCATTTCAAATC------------CAAGTTGAGCGCCATA-GGCTTCGGAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T-GGGGCGGTAAATTTGAAC-TGCAA--------CCAG------------TATTTGCCACTAATTAACATACCATTTCCCTATATTCGATATAAATGCAGTGCAATATGAGTTTACTTTCTGTGCAAAATGAATTGATTC
droYak3	X:11922584-11922823 +		CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTTCGGGTAAGTGTC-----GTAATCCC---------GCCAAGC----------------------------------------------------GGTATTA-TAAGTTCAACCTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GGCTTCGAAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T-GGGGCGGTAAATTTGAAC-TGCAA--------TCAG------------CATT-------TGCCAGCACTCCATTTCCATTAATGTGATGTAAATGC------------------------------------------
droEug1	scf7180000409109:36120-36373 +		CTGCCAACGTGCCTATCGAGTGGGAGGCCGTGGACGTGACCCCCGTTCGGGTGAGTGTC-----ATAATCCC---------GGGAAGG--------------------------C----------------------------GGAA-GAAG-CCAG-TTACCAGTTCAAATCGAAAC---CTAGTA--ATTAGCGCCCTC-TGC--CGAAGTCATTACCCTT-TTAGTAACAGGTGGCAACTACTGTCATA--TGAAGGCGCAAAATTTAAAA-ATCTA--------TCTG------------CATTTAAGTCTTTTAAACATTCGATTTTA-------------AAAAGC------------------------TCTAAAATTAATAGCATT
droBia1	scf7180000302069:1186768-1187002 +		CCGCCAACGTGCCCATCGAGTGGGAGGCCGTGGACGTTACCCCCGTTCGGGTGAGTGTC-----GTAATCCC---------GGGAAGA------------------------TGCC------------------------GATGCTA-GTTGCCCAG-GTGCCAGTTCGAATCAAAAC---CAAGCAATTCGAGCGCCTTC-GGTTTGGGTGTGAACGGCCTT-TTGC---CAGGTGGCAACTATGG-CGTT--TGAACGCGGGAAATTTGAAA-TGCAC--------CCTGCGA--G------CATT----------TAGCACTC---------------------------------------------------------TCAATCGCTTG
droTak1	scf7180000415169:882700-882861 +		CCGCCAACGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTGAGTGTC-----GTAATCT--GTAATCCCGGCAAGG-----------------------------------------------------------------------CGCCAGTTCAAATTG-----------CAAATTCAGCACCCCC-TG----G------A---------TTGCAAAAGGTGGCAACTACGGCCATT--T-TAGGCGGTGGATTTGAAA------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490751:1071628-1071807 -		CTGCCAACGTGCCCATCGAGTGGGAGGCCGTGGATGTGACCCCCGTTCGGGTGAGTGTGGTGTCGTAACCTCGGGAGTCCCGCAA------------------------------------------------------------------------------AGTTCAAATCGAAACGTCCAAAGA---------------AGTTTCCATGTGAATGGCCTT-TTGGCAACAGGTGGCAACTGCTACTGCT--CAAGGGCGCAAAATTTGAAA-TG---------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000761121:230696-230899 +		CTGCCAACGTTCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAACCTCGGGAATCCCGGGAGGG------------------------CGCC---------------------------------------A--GCGCCAGTTCAAATCGAATC---CACCTAAATCGAGCGCCCTC-GGTTTCCATGTGAATGGTCTT-TTGGCAACAGGTGGCAACTGTGGGTGTT--T-AGGGCGCAAAATTTGAAA-TGCCA--------TCA-------------------------------------------------------------------------------------------------------
droFic1	scf7180000454073:1690390-1690624 -		CGGCAAATGTGCCCATCGAGTGGGAGGCTGTGGATGTGACCCCCGTGCGGGTGAGTGTC-----GTAATAAC---------CGG-----------------------------GC---------------------------------CAAA-CCAA-GCGCCAGTTCAATTT------------CAAATTGACCGC-----GCTATCGATGTGAATGGCCTTTTTGGCAACAGGTGGCAACAATGGAGGTTATT-GGGGCGGGAAATTTAAAAATGAAAGTTGATTTCCAG--GCAGTTATTCTATT----------CAG------------------------TAATTTC--------------------------C-AAATATTTTATTTT
droKik1	scf7180000302517:1143637-1143844 -		CCGCCAATGTGCCCATTGAGTGGGAGGCCGTCGATGTGACCCCCGTTCGTGTAAGTATG-----TT---TTC---------GTGGAGAAAACCTTTATTTTTTGTGTAATAACTTCGGTTTCGGTTGGAAATTTGAAATT--------GTT--------------------TT------------CAAACTGAGCGCATTTTTTCTGCGTAGTGAATGG---------CAACAGGTGGCAACG-CTGCCGGT----AGTGCGGGAAATTTAAAC-TAAAA------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13417:2519042-2519153 +		CGGCCAGCGTGCCCATCGAGTGGGAGGCCGTCGACGTGACTCCTGTCCGGGTGAGTGG----------TCCT---------GGCAATT------------------------TCCC------------AGC---------CGTTTGATTGAGAAGGATATGACATTTTAAATT------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396003:17882-17937 +		CTGCCAATGTGCCCATCGAGTGGGAGGCCGTCGACGTTACACCCGTTCGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group1a:5400043-5400101 +		CGGCGAGTGTGCCCATTGAATGGGAAGCCGTCGACGTCACCCCCGTGCGTGTAAGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_14:2048229-2048287 +		CGGCGAGTGTGCCCATTGAATGGGAAGCCGTCGATGTCACCCCCGTGCGTGTAAGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004909:1822201-1822258 +		CCGCTAATGTGCCTATCGAATGGGAAGCCGTCGATGTGACGCCCGTGCGTGTAAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13042:967188-967282 +		CCGCCAAAGTGCCCATCGAATGGGAGGCTGTCGATGTGACGCCCGTCCGTGTAAGTATT-----TT----CC---------AGT----------------------------------------------------------------GTTTTCCGTATTTTTATTTCAAATC------------AAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6328:2953211-2953268 +		CCGCCAACGTTCCCATCGAGTGGGAAGCTGTTGATGTAACACCCGTGCGTGTAAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15081:2090879-2090934 +		CCGCCAGTGTGCCCATCGAGTGGGAAGCTGTCGATGTGACGCCAGTCCGTGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCAAGA-------------------------------------------------------GTTA-GTTGTTCAACTTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGTAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGT--------TGGGCGGTAAATTTGAAA-TGCAA--------CCAGCGG----------------CTATAGTTAACATTCCATTTGCATATATTCGATATAAATGC--------------------------C-AAATCAATGGATTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......TGTGCCCATCGAGTGGGAGGCCGTGG.........................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
.........TGCCCATCGAGTGGGAGGCCGTGG.........................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.........................GGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........GTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCAAGA-------------------------------------------------------GTTA-GTTGTTCAACTTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGTAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGT--------TGGGCGGTAAATTTGAAA-TGCAA--------CCAGCGG----------------CTTTAGTTAACATTCCATTTCCATATATTCGATATAAATGC--------------------------CAAGATCAATGGATTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.CGCCAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0
..GCCAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
...............TCGAGTGGGAGGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0
....CAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
....CAATGTGCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.....AATGTGCCCATCGAGTGGGAGGCCGTG..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.........TGCCCATCGAGTGGGAGGCCGTGGA........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
......ATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.................GAGTGGGAGGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
....CAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.......TGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.....AATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
............................CGTGGACGTGACCCCCGTC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
.................GAGTGGGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.....AATGTGCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
....CAATGTGCCCATCGAGTGGGAGGCCGTG..........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
..................AGTGGGAGGCCGTGGACGTGACCC................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
....................TGGGAGGCCGTGGACGTGACC.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.CGCCAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
................CGAGTGGGAGGCCGTGGACG......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.....AATGTGCCCATCGAGTGG...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................GGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
........GTGCCCATCGAGTGGGAGGCCGTGGA........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.....AATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....................GGGAGGCCGTGGACGTGAC..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0

dm3

CCGCCAATGTCCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAATCCC---------AGCCAGA-------------------------------------------------------GTTA-GTGGTTCAACTTGACATTTCAAATC------------CAAGTTGAGCGCCATC-GCCTTCGAAGCGCGTGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T--GGGCGGTAAATTTGAAA-TACAA--------CCAG--G----------------CTCTAGTTAACATTCCATTGCCATATATTCGATATAAATGC--------------------------C-AAATCAATGGATAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................GGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ATGTCCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGTGGGAGGCCGTGGACG......................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGAGGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGTGGGAGGCCGTGGACGTGACCCCCGTCC..........................................................................................................................................................................................................................................................................................................................................................	30	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCGAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................TGGACGTGACCCCCGTCCGG........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GGGAGGCCGTGGACGTGAC..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CCGCCAATGTCCCCATCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ACAGGTGGCAACTACGGTCGT...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................CGAGTGGGAGGCCGTGGACGTGACCCCCGT............................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCGAGTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AGGCCGTGGACGTGACCC................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GTC--T--GGGCGGTAAATC.............................................................................................................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACTCCCGTTCGGGTGAGTGTC-----GTAATCCC---------GGCAAGC-------------------------------------------------------GGTA-CAAGTTCAGCTTGCCATTTCAAATC------------CAAGTTGAGCGCCATA-GGCTTCGGAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T-GGGGCGGTAAATTTGAAC-TGCAA--------CCAG------------TATTTGCCACTAATTAACATACCATTTCCCTATATTCGATATAAATGCAGTGCAATATGAGTTTACTTTCTGTGCAAAATGAATTGATTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......ATGTGCCCATCGAGTGGGAGGCCGTGGA........................................................................................................................................................................................................................................................................................................................................................................	28	1	19.00	19	0	0	0	0	0	0	19
....CAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1	0
............................CGTGGACGTGACTCCCGTTCGGG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.......................GAGGCCGTGGACGTGACTCCC..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.CGCCAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..........GCCCATCGAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......ATGTGCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............ATCGAGTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.CGCCAATGTGCCCATCGAGTG....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...................GTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
................CGAGTGGGAGGCCGTGGA........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
CCGCCAATGTGCCCATCGAGTGGGAGG...............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................GGCCGTGGACGTGACTCCCGT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....CAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............TCGAGTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................GGCCGTGGACGTGACTCCC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......TGTGCCCATCGAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..................AGTGGGAGGCCGTGGACGTGACTCCC..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................GATATAAATGCAGTGCAATATGAGT............................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................CGT-TTGACAACAGGTGGCAAC........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................GGAGGCCGTGGACGTGACTCC...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............ATCGAGTGGGAGGCCGTGGACGTGACT.................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..................AGTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................GAGTGGGAGGCCGTGGACGTGACTC................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....................GGGAGGCCGTGGACGTGACTCC...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..................AGTGGGAGGCCGTGGACGTGACTC................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.................GAGTGGGAGGCCGTGGACGTGACTCCC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
.CGCCAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
................CGAGTGGGAGGCCGTGGACGTGACT.................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.........................GGCCGTGGACGTGACTCCCGTTCGG........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................CGTGGACGTGACTCCCGTTCGGGGT.....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................GTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....CAATGTGCCCATCGAGTG....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........GTGCCCATCGAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............................GGACGTGACTCCCGTTCGGGGTC....................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	1	0

droYak3

CCGCCAATGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTTCGGGTAAGTGTC-----GTAATCCC---------GCCAAGC----------------------------------------------------GGTATTA-TAAGTTCAACCTGCCATTTCAAATC------------CAAGTTGAGCGCCATC-GGCTTCGAAGCGCATGGCCGT-TTGACAACAGGTGGCAACTACGGTCGTC--T-GGGGCGGTAAATTTGAAC-TGCAA--------TCAG------------CATT-------TGCCAGCACTCCATTTCCATTAATGTGATGTAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....AATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
..GCCAATGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.................GAGTGGGAGGCCGTGGACGT.....................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
................CGAGTGGGAGGCCGTGGACG......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............ATCGAGTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......TGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CGTGGACGTGACCCCCGTTCGGG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................GGACGTGACCCCCGTTCGGG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....CAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................CGAGTGGGAGGCCGTGGACGTGACCCC...............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................AGTGGGAGGCCGTGGACGTGACC.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........TGCCCATCGAGTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................GGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................AGTGGGAGGCCGTGGACGTGACCCCCGTTC..........................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GTGGGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............TCGAGTGGGAGGCCGTGGA........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............TCGAGTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................CGAGTGGGAGGCCGTGGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CGTGGACGTGACCCCCGTTC..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................AGTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ATCGAGTGGGAGGCCGTGGACGTG....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............TCGAGTGGGAGGCCGTGGACGT.....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....AATGTGCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................GGGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....CAATGTGCCCATCGAGTGGGAGGCC.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGCCAATGTGCCCATCGAGTG....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.............CATCGAGTGGGAGGCCGTGGACGT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........GCCCATCGAGTGGGAGGCCGTGGAC.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...CCAATGTGCCCATCGAGTGG...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............ATCGAGTGGGAGGCCGTG..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................AGTGGGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........TGCCCATCGAGTGGGAGGCCGTG..........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CGCCAATGTGCCCATCGAGTGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GAGTGGGAGGCCGTGGACGTGACCCCC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......ATGTGCCCATCGAGTGGGAGGCCG............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CTGCCAACGTGCCTATCGAGTGGGAGGCCGTGGACGTGACCCCCGTTCGGGTGAGTGTC-----ATAATCCC---------GGGAAGG--------------------------C----------------------------GGAA-GAAG-CCAG-TTACCAGTTCAAATCGAAAC---CTAGTA--ATTAGCGCCCTC-TGC--CGAAGTCATTACCCTT-TTAGTAACAGGTGGCAACTACTGTCATA--TGAAGGCGCAAAATTTAAAA-ATCTA--------TCTG------------CATTTAAGTCTTTTAAACATTCGATTTTA-------------AAAAGC------------------------TCTAAAATTAATAGCATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGCCAACGTGCCCATCGAGTGGGAGGCCGTGGACGTTACCCCCGTTCGGGTGAGTGTC-----GTAATCCC---------GGGAAGA------------------------TGCC------------------------GATGCTA-GTTGCCCAG-GTGCCAGTTCGAATCAAAAC---CAAGCAATTCGAGCGCCTTC-GGTTTGGGTGTGAACGGCCTT-TTGC---CAGGTGGCAACTATGG-CGTT--TGAACGCGGGAAATTTGAAA-TGCAC--------CCTGCGA--G------CATT----------TAGCACTC---------------------------------------------------------TCAATCGCTTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGCCAACGTGCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTGAGTGTC-----GTAATCT--GTAATCCCGGCAAGG-----------------------------------------------------------------------CGCCAGTTCAAATTG-----------CAAATTCAGCACCCCC-TG----G------A---------TTGCAAAAGGTGGCAACTACGGCCATT--T-TAGGCGGTGGATTTGAAA------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGCCAACGTGCCCATCGAGTGGGAGGCCGTGGATGTGACCCCCGTTCGGGTGAGTGTGGTGTCGTAACCTCGGGAGTCCCGCAA------------------------------------------------------------------------------AGTTCAAATCGAAACGTCCAAAGA---------------AGTTTCCATGTGAATGGCCTT-TTGGCAACAGGTGGCAACTGCTACTGCT--CAAGGGCGCAAAATTTGAAA-TG---------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTGCCAACGTTCCCATCGAGTGGGAGGCCGTGGACGTGACCCCCGTCCGGGTAAGTGTC-----GTAACCTCGGGAATCCCGGGAGGG------------------------CGCC---------------------------------------A--GCGCCAGTTCAAATCGAATC---CACCTAAATCGAGCGCCCTC-GGTTTCCATGTGAATGGTCTT-TTGGCAACAGGTGGCAACTGTGGGTGTT--T-AGGGCGCAAAATTTGAAA-TGCCA--------TCA-------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGGCAAATGTGCCCATCGAGTGGGAGGCTGTGGATGTGACCCCCGTGCGGGTGAGTGTC-----GTAATAAC---------CGG-----------------------------GC---------------------------------CAAA-CCAA-GCGCCAGTTCAATTT------------CAAATTGACCGC-----GCTATCGATGTGAATGGCCTTTTTGGCAACAGGTGGCAACAATGGAGGTTATT-GGGGCGGGAAATTTAAAAATGAAAGTTGATTTCCAG--GCAGTTATTCTATT----------CAG------------------------TAATTTC--------------------------C-AAATATTTTATTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGCCAATGTGCCCATTGAGTGGGAGGCCGTCGATGTGACCCCCGTTCGTGTAAGTATG-----TT---TTC---------GTGGAGAAAACCTTTATTTTTTGTGTAATAACTTCGGTTTCGGTTGGAAATTTGAAATT--------GTT--------------------TT------------CAAACTGAGCGCATTTTTTCTGCGTAGTGAATGG---------CAACAGGTGGCAACG-CTGCCGGT----AGTGCGGGAAATTTAAAC-TAAAA------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGGCCAGCGTGCCCATCGAGTGGGAGGCCGTCGACGTGACTCCTGTCCGGGTGAGTGG----------TCCT---------GGCAATT------------------------TCCC------------AGC---------CGTTTGATTGAGAAGGATATGACATTTTAAATT------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................GGCCGTCGACGTGACTCCTGTCC..........................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	2	0	0	0	0	6
..........................GCCGTCGACGTGACTCCTGTCC..........................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
...................GTGGGAGGCCGTCGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	1	0	2	0
........................AGGCCGTCGACGTGACTCC...............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.........................GGCCGTCGACGTGACTCCTGTCCG.........................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	0	1
..............................TCGACGTGACTCCTGTCC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................GGGAGGCCGTCGACGTGAC..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..............ATCGAGTGGGAGGCCGTCGACGTG....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..........GCCCATCGAGTGGGAGGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................GAGGCCGTCGACGTGACT.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..GCCAGCGTGCCCATCGAGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...................GTGGGAGGCCGTCGACGTGC...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.................GAGTGGGAGGCCGTCGACGTGA...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................AGTGGGAGGCCGTCGACGTGACTCCT..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................GACGTGACTCCTGTCCGGGGT.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................GCCGTCGACGTGACTCCTGTCCG.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................GTCGACGTGACTCCTGTCC..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................GAGTGGGAGGCCGTCGACGTGACTCC...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..GCCAGCGTGCCCATCGAGTGGGAGGCCG............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
............................CGTCGACGTGACTCCTGTCCG.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................GTCGACGTGACTCCTGTCCGGG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................GGCCGTCGACGTGACTCCTGTC...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.....AGCGTGCCCATCGAGTGGGAGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................AGTGGGAGGCCGTCGACGTGACTCC...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............TCGAGTGGGAGGCCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................AGTGGGAGGCCGTCGACGTGACT.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................GTGGGAGGCCGTCGACGTGACTCCT..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....AGCGTGCCCATCGAGTGGGAGGCC.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............TCGAGTGGGAGGCCGTCGACGTG....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................GAGTGGGAGGCCGTCGACGTGAC..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................GAGTGGGAGGCCGTCGACGTGACTCCT..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................GAGTGGGAGGCCGTCGACGTG....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................GGCCGTCGACGTGACTCCTGT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....CAGCGTGCCCATCGAGTGGGAG................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...................GTGGGAGGCCGTCGACGTGACT.................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droBip1

CTGCCAATGTGCCCATCGAGTGGGAGGCCGTCGACGTTACACCCGTTCGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGGCGAGTGTGCCCATTGAATGGGAAGCCGTCGACGTCACCCCCGTGCGTGTAAGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................TGGGAAGCCGTCGACGTCA...................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	1	0	0	0	0
.............CATTGAATGGGAAGCCGTCGACGTCC...................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............CATTGAATGGGAAGCCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................GGAAGCCGTCGACGTCACCCCC..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................TGGGAAGCCGTCGACGTCACCCC...............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GTGCCCATTGAATGGGAAGCCGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AGCCGTCGACGTCACCCCCGTGCGTG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GTGCCCATTGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............ATTGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................GGGAAGCCGTCGACGTCACC.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................TGAATGGGAAGCCGTCGACGTCACC.................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................GGGAAGCCGTCGACGTCACCCC...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CCATTGAATGGGAAGCCGTCGACGTC....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GTGTGCCCATTGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TGGGAAGCCGTCGACGTC....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....AGTGTGCCCATTGAATGGGAAGC..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AAGCCGTCGACGTCACCCC...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AGTGTGCCCATTGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................AGCCGTCGACGTCACCCCCGTGC..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............CCATTGAATGGGAAGCCGTCGA........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....GAGTGTGCCCATTGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CGGCGAGTGTGCCCATTGAATGGGAAGCCGTCGATGTCACCCCCGTGCGTGTAAGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........GCCCATTGAATGGGAAGCCGTCGATGT.....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................ATGGGAAGCCGTCGATGTC....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................GAAGCCGTCGATGTCACCCC...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............TTGAATGGGAAGCCGTCGATGTC....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................GATGTCACCCCCGTGCGT........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
...............TTGAATGGGAAGCCGTCGA........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................GAATGGGAAGCCGTCGATGTCACCCC...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0

droWil2

CCGCTAATGTGCCTATCGAATGGGAAGCCGTCGATGTGACGCCCGTGCGTGTAAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.CGCTAATGTGCCTATCGAATGGGA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	2	1	1	0
................CGAATGGGAAGCCGTCGATGTGAC..................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0	0
................CGAATGGGAAGCCGTCGATGTGA...................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
........GTGCCTATCGAATGGGAAGCCGTCGAT.......................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0
.................GAATGGGAAGCCGTCGATGTGA...................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
................CGAATGGGAAGCCGTCGATGT.....................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0
........GTGCCTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
.........TGCCTATCGAATGGGAAGCCGTCGA........................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
.............TATCGAATGGGAAGCCGTCGATGTGACG.................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0
.................GAATGGGAAGCCGTCGATGT.....................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
................CGAATGGGAAGCCGTCGATGTGACGC................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
......ATGTGCCTATCGAATGGGAAGCC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.CGCTAATGTGCCTATCGAATGGGAAGCC.............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
....TAATGTGCCTATCGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
......ATGTGCCTATCGAATGGGAAGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.CGCTAATGTGCCTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0	0
.................GAATGGGAAGCCGTCGATGTGACGCCC..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........GTGCCTATCGAATGGGAAGCCGTCGA........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.......................GAAGCCGTCGATGTGACGCCCGTGCGT........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....AATGTGCCTATCGAATGGGAAGCC.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
............CTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............CTATCGAATGGGAAGCCGTCGATGT.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
......ATGTGCCTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.................GAATGGGAAGCCGTCGATGTGAC..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............ATCGAATGGGAAGCCGTCGATGTGACGCCC..............................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0	0
.................GAATGGGAAGCCGTCGATGTGACGCC...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
CCGCTAATGTGCCTATCGAATGG...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.............TATCGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...CTAATGTGCCTATCGAATGGGAA................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......TGTGCCTATCGAATGGGAA................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..........GCCTATCGAATGGGAAGCCGTCGA........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
............CTATCGAATGGGAAGCCGTCGAT.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.....AATGTGCCTATCGAATGGGAAGC..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................TGGGAAGCCGTCGATGTGACGCC...............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..........................GCCGTCGATGTGACGCCCGTG...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.CGCTAATGTGCCTATCGAATGG...................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....AATGTGCCTATCGAATGGGAAG...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..GCTAATGTGCCTATCGAATGGGA.................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............CTATCGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......TGTGCCTATCGAATGGGAAGCC.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......ATGTGCCTATCGAATGGGAAGCCGTCG.........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...CTAATGTGCCTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..................AATGGGAAGCCGTCGATGTGACGCC...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
......ATGTGCCTATCGAATGGGAA................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........GCCTATCGAATGGGAAGCCGTC..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.CGCTAATGTGCCTATCGAAT.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
....TAATGTGCCTATCGAATGGGAAGC..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....AATGTGCCTATCGAATGGGAAGCCGT...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
........................AAGCCGTCGATGTGACGCCCGTGCGT........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0

droVir3

CCGCCAAAGTGCCCATCGAATGGGAGGCTGTCGATGTGACGCCCGTCCGTGTAAGTATT-----TT----CC---------AGT----------------------------------------------------------------GTTTTCCGTATTTTTATTTCAAATC------------AAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......AAGTGCCCATCGAATGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCCCATCGAATGGGAGGCTGT...........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTGCCCATCGAATGGGAGGCT.............................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAATGGGAGGCTGTCGATGTGA...................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.CGCCAAAGTGCCCATCGAATG....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCCAAAGTGCCCATCGAATG....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGATGTGACGCCCGTCCGT........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGAATGGGAGGCTGTCGATGTGACGC................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CGCCAAAGTGCCCATCGAATGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGTCGATGTGACGCCCGTC...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGTGCCCATCGAATGGGAGGCTGTC..........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATGGGAGGCTGTCGATGTGAC..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAGTGCCCATCGAATGGGAGGCTGT...........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTGCCCATCGAATGGGAGGCTGGTC.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........GCCCATCGAATGGGAGGCTGTC..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGGGAGGCTGTCGATGTGACGCCCGTC...........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AATGGGAGGCTGTCGATGTGA...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAATGGGAGGCTGTCGATGTGAC..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGAATGGGAGGCTGTCGATGTGACGCC...............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................CGAATGGGAGGCTGTCGATGTGA...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......AAGTGCCCATCGAATGGGAGGCT.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AAAGTGCCCATCGAATGGGAGGCT.............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGCCCATCGAATGGGAGGCT.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCTGTCGATGTGACGCCCGTCCGT........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTGCCCATCGAATGGGAGGCTGG...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGTGCCCATCGAATGGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGTCGATGTGACGCCCGTCCGT........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CGATGTGACGCCCGTCCGTG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGTCGATGTGACGCCCGTCCGTG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATCGAATGGGAGGCTGTC..........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GCTGTCGATGTGACG.................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................AATGGGAGGCTGTCGATGTGACC.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TGCCCATCGAATGGGAGGCTGTCGA........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GTGACGCCCGTCCGTGGTC....................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCGCCAACGTTCCCATCGAGTGGGAAGCTGTTGATGTAACACCCGTGCGTGTAAGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........CCCATCGAGTGGGAAGCTGTTGATGTAAC..................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0
.............CATCGAGTGGGAAGCTGTTGATGT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

CCGCCAGTGTGCCCATCGAGTGGGAAGCTGTCGATGTGACGCCAGTCCGTGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............ATCGAGTGGGAAGCTGTCGATGTG....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

dsi_30407

x:18304153-18304302 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads