ID:

dsi_30404

 Coordinate:

3r:10814635-10814692 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.1 -7.6

Flybase annnotation

CDS [3r_10814459_10814634_+]; exon [3r_10814426_10814634_+]; CDS [3r_10814693_10814888_+]; exon [3r_10814693_10815047_+]; intron [3r_10814635_10814692_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
CTGGATGCCACCCTCGCACAGTTGGCCACCGGAAATGGTCCCAACTACAAGTGAGTCAGGACTGAGTTCCGAATTCAAAATTAATACTAATTGATATGGTGATCTTAGGGCTATCAATGTGACCTCTGTGACGGGTCAGACTGTATCTGGAACCCTCA
**************************************************...........((.((..(((...(((..((((....)))))))..)))....)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................CAGACTGTATCTGGAACCCT.. 20 0 1 15.00 15 13 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGACTGTATCTGGAACCCT.. 19 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTCAGACTGTATCTGGAACCCT.. 22 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGACTGTATCTGGAACCC... 18 0 1 4.00 4 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................CAATGTGACCTCTGTGACG......................... 19 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
................................................................................................................ATCAATGTGACCTCTGTGACG......................... 21 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0
..................................................................................................................CAATGTGACCTCTGTGACGG........................ 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTCACACTGTATCTGGAACCCT.. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAAGGCTATCAATGTGACCTCTGT............................. 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGCTATCAATGTGACCTCTGTGACGG........................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
......................................................GTCAGGACTGAGTTCCGA...................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GACTGTATCTGGAACCCT.. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGTGACGGGTCAGACTGTATCTGGA....... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................ATCAATGTGACCTCTGTGACGG........................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................AAGGCTATCAATGTGACCTCT............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACGGGTCAGACTGTATCTGG........ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................GTCAGACTGTATCTGGAACCCC.. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TGGTGATCTTAGGGCTATCAA......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................CAGACTGTATCTGGAACCC... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................TCAGACTGTATCTGGAACCCT.. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................CCTCTGTGACGGGTCAGACT................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTCAGACTGTATCTGGAACCCT.. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................ATCAATGTGACCTCTGTGACGGGC...................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................CTCTGTGACGGGTCAGACT................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TCTGTGACGGGCCAGACTGTATCT.......... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................GGTCAGACTGTATCTGGAACCCC.. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAGACTGTATCTGGAACC.... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................GCTATCAATGTGACCTCTGG............................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................GTGACCTCTGTGACGGGCCAGACTGTAT............ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................GTGACCTCTGTGACGGGCCAGACTGTATC........... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........CACCCTCGCACAGTTGGCC................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCTGTGACGGGCCAGACTGTATC........... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................GTGAGTCAGGACTGAGTTC......................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................CAATGTGACCTCTGTGAC.......................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACGGGTCAGACTGTATCTGGAACC.... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............CGCACAGTTGGCCACCGGCAAT.......................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................AACTACAAGTGAGTCAGGACTGAGG........................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................GCTATCAATGTGACCTCTGTGACG......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................GCTATCAATGTGACCTCTGTGACGGGT...................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGTGACCTCTGTGACGGGCCAG................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................AATGTGACCTCTGTGACGGG....................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............CGCACAGTTGGCCACCGGA............................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................AATGTGACCTCTGTG............................ 15 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................AGGGCTATCACTGTG..................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
......GCCACGCTAGCACAGTCGG..................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................GTCACACTGTATTTGGA....... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACCTACGGTGGGAGCGTGTCAACCGGTGGCCTTTACCAGGGTTGATGTTCACTCAGTCCTGACTCAAGGCTTAAGTTTTAATTATGATTAACTATACCACTAGAATCCCGATAGTTACACTGGAGACACTGCCCAGTCTGACATAGACCTTGGGAGT
**************************************************...........((.((..(((...(((..((((....)))))))..)))....)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.....................................................TCAGTCCTGACTCAAGGCTTAAGTTTTA............................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0
..............................................................................................................................ACACTGCCCAGTCTGACATAGA.......... 22 0 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................CACTGCCCAGTCTGACATAGA.......... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................TGACTCAAGGCTTAAGTTTTAATTATGA...................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................AGCAGCCTGACATAGACCTTG..... 21 3 1 1.00 1 0 0 0 1 0 0 0
.....................................CAGGGTTGATGTTCACTC....................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................GGAGACACTGCCCAGTA................... 17 1 2 0.50 1 0 0 1 0 0 0 0
..........................................................................................................................GGAGACACCGCCCAGTA................... 17 2 12 0.33 4 0 0 4 0 0 0 0
..........................................................................................................................GGAGACACCGCCCAGT.................... 16 1 3 0.33 1 0 0 1 0 0 0 0
............................................................................................................................AGACACTGCCCAGTA................... 15 1 4 0.25 1 0 0 1 0 0 0 0
..........................................................................................................................GGAGACACCGCCCAG..................... 15 1 5 0.20 1 0 0 1 0 0 0 0
...................................TCCAGGGTTGATGTT............................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 1 0
..................................................................................................................................TGCCCCCTCTGACATACACC........ 20 3 6 0.17 1 0 0 0 0 0 0 1
..........................................................................................................................GGAGACACCGCCCAGTAAG................. 19 3 16 0.06 1 0 0 1 0 0 0 0
TACGTACGGTCGGAGCGTG........................................................................................................................................... 19 3 18 0.06 1 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:49 AM