ID:

dsi_30398

 Coordinate:

3r:4659116-4659176 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4659002_4659115_+]; CDS [3r_4659002_4659115_+]; CDS [3r_4659177_4659397_+]; exon [3r_4659177_4659397_+]; intron [3r_4659116_4659176_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
AGTACCAGCAACAGGTCCACTCAGCGCCCGGTGTGCCGCCCCAGCAATACGTGAGTGCAAAAGCGCATTTCCGAACGGTAGACAATTAACTAGTAGGCCTCCGACTTCCAGCAATACGAACAGGTTCAAGTTCCCGTGCAGCAGCAGGCACCGGTCCAATA
**************************************************..((((((......)))))).....(((.((.................)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..........................CCCGGTATGTCGCCCCA...................................................................................................................... 17 2 3 1.33 4 4 0 0 0
........CAACAGGTCCACTCAGCGCCC.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...........................CCGGTATGTCGCCCCA...................................................................................................................... 16 2 13 0.46 6 6 0 0 0
.........................TCCCGGTATGTCGCCCCA...................................................................................................................... 18 3 20 0.45 9 9 0 0 0
............................................................................................................................................GCTGCCGGCACCTGTCCAAT. 20 3 10 0.10 1 0 0 1 0
....................................................................................................................................CCCGTGGAGCAGAAGGCA........... 18 2 12 0.08 1 0 0 0 1
.............................................................................................................AGCAATACGAAAAGGATC.................................. 18 2 16 0.06 1 0 0 1 0
..............................................................................................AGGCCTCCGACGTCCG................................................... 16 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCATGGTCGTTGTCCAGGTGAGTCGCGGGCCACACGGCGGGGTCGTTATGCACTCACGTTTTCGCGTAAAGGCTTGCCATCTGTTAATTGATCATCCGGAGGCTGAAGGTCGTTATGCTTGTCCAAGTTCAAGGGCACGTCGTCGTCCGTGGCCAGGTTAT
**************************************************..((((((......)))))).....(((.((.................)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae		 SRR902008
ovaries
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR1275483
Male prepupae
................................CACGGCGGGGTCGGTTTG............................................................................................................... 18 2 10 115.50 1155 774 198 149 4 0 15 0 4 0 8 1 1 1 0 0 0
...............................ACACGGCGGGGTCGGTTTG............................................................................................................... 19 2 6 20.17 121 51 45 5 7 1 3 1 4 0 1 1 0 0 1 1 0
.............................CTACACGGCGGGGTCGGT.................................................................................................................. 18 2 17 2.71 46 3 5 0 34 0 0 0 0 0 0 0 0 4 0 0 0
...............................ACACGGCGGGGTCCTGATG............................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GGCCACACGGCGGGGTCG.................................................................................................................... 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................TGAGTCGCGGGCCAC................................................................................................................................ 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........GTCCAGGTGAGTCGCAGG.................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................TGAGTCGCGTGCCAC................................................................................................................................ 15 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................ACGGCGGGGTCGGTTTG............................................................................................................... 17 2 20 1.00 20 0 0 0 0 0 12 4 0 0 0 0 3 0 0 0 1
..............................CACACGGCGGGGTCGTTA................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AAAGGCTTGCCATCTGTTAATTGATCAT.................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................GTCTACACGGCGGGGTCG.................................................................................................................... 18 2 9 0.56 5 2 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................ACACGGCGGGGTCGGT.................................................................................................................. 16 1 8 0.50 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0
.................CTGAGTCGCGGGCCAC................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................CACGGCGGGGTCGGTTTGC.............................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ACACGGCGGGGTCGGTCT................................................................................................................ 18 2 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TCTGAGTCGCGGGCCAC................................................................................................................................ 17 2 8 0.38 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
................TCTGAGTCGCGGGCC.................................................................................................................................. 15 2 20 0.30 6 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0
................................CACGGCGGGGTCGGT.................................................................................................................. 15 1 17 0.29 5 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0
................................CACGGCGGGGTCGATTTG............................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ACACGGCGGGGTCGTTTT................................................................................................................ 18 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TACACGGCGGGGTCG.................................................................................................................... 15 1 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
..................TGAGTCGCGGGCCCCCC.............................................................................................................................. 17 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................TGAGTCGCGGGCCACGG.............................................................................................................................. 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................GCTACACGGCGGGGTCGGTTTG............................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CACGGCGGGGTCGGTCTG............................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GGTGAGTCGCGGGTTACA............................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................ACACGGCGGGGTCGCTTT................................................................................................................ 18 2 15 0.13 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCTACACGGCGGGGTCGGTTT................................................................................................................ 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCTACACGGCGGGGTCGG................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CACGGCGGGGTCGGTGTG............................................................................................................... 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TCTGAGTCGCGGGCCA................................................................................................................................. 16 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................CGGGGTCGTTCTGGACTGA......................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AGGCTGGGAATCTGTTAAT......................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................CACGGCAGGGTCGGTTTG............................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCACGGCGGGGTCGGTTTG............................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTCTACACGGCGGGGTCG.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:20 AM