ID:

dsi_30397

 Coordinate:

2r:5816701-5816850 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.9 -12.8 -12.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAAATGTAGTATGTACAAACATATGTTTATGTTTTAAAATGCGACCAGAAGGGCTATTTATCATGCTATTTTGTGTTAGATCTACGAAGCCCAGCATCGAAAAGGTTTCCGTACATTTCATAAAATCCCCTAGCCAAAACTTGTATAGACTAAGTAGGCAACAAATTGACTCTTTCCGCTTTCGTTGCTTGTATTGTAGGTGGTAATGTTTTTAAGAAACCTCAGAAAGCGGAGGAGCTTTACAAGCGT
*****************************************************************************.((((.(((((((((............))))).)))).))))..............(((...((((((....)).)))).))).......*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M024
male body		 M025
embryo
 GSM343915
embryo
.............................................................................TAGATCTACGAAGCCCAGCATCGAAA................................................................................................................................................... 26 0 1 11.00 11 11 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGTATAGACTAAGTAGGCAACAAAT................................................................................... 25 0 1 9.00 9 1 6 0 0 1 1 0 0 0 0 0
................................................................TGCTATTTTATGTTAGATCAACGAAG................................................................................................................................................................ 26 2 1 3.00 3 0 0 0 2 0 0 1 0 0 0 0
.............................................................................TAGATCTACGAAGCCCAGCATCGAA.................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGTATAGACTAAGTAGGCAACAAA.................................................................................... 24 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0
............................................................................................................................................CTTGTATAGACTAAGTAGGCAACAAA.................................................................................... 26 0 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TAGACTAAGTAGGCAACAAATTGAC............................................................................... 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCCGCTTTCGTTGCTTGTATTGTAGG................................................. 26 0 1 3.00 3 0 0 1 0 0 0 0 0 0 2 0
......................TATGTTTATGTTTTAAAATGCGACCAGA........................................................................................................................................................................................................ 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...........................................................TATCATGCTATTTTATGTTAGATCAACGA.................................................................................................................................................................. 29 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................TTGTGTTAGATCTACGAAGCCCAGCA......................................................................................................................................................... 26 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0
...................................................................................................................................TAGCCAAAACTTGTATAGACTAAGTA............................................................................................. 26 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................TAGACTAAGTAGGCAACAAATTGACTCTT........................................................................... 29 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0
..................................................................................................................................................TAGACTAAGTAGGCAACAAATTGACTC............................................................................. 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 1
........................................TGCGACCAGAAGGGCTATTTATCATGC....................................................................................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
........................................................................................AGCCCAGCATCGAAAAGGTTTCCGTA........................................................................................................................................ 26 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
...................................................................................TACGAAGCCCAGCATCGAAAAGGTT.............................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCTCAGAAAGCGGAGGAGCTTTAC...... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................GTTTTAAAATGCGACCAGAAGGGCT.................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
..................................................................................................................................................................................................................TTTTAAAAAACCTCAGAAAGCGGA................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTCGTTGCTTGTATTGTAGGTGGTAA........................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCGTTGCTTGTATTGTAGGTGGTAAT.......................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTCCGCTTTCGTTGCTTGTATTGTAGG................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.TAAATGTAGTATGTACAAACATATG................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCAGAAAGCGGAGGAGCTT......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTTTCGTTGCTTGTATTGTAGGTGGT............................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................AAATGCGACCAGAAGGGCTATTT.............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGTAGGTGGTAATGTTTTTAAGAAACC............................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAAAGCGGAGGAGCTT......... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................TCATGCTATTTTGTGTTAGATCTACGAA................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................TTAAAATGCGACCAGAAGGGCT.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................TATGTTTATGTTTTAAAAAGCGACCAGA........................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAAGAAACCTCAGAAAGCGGAGGAGCTT......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGAAACCTCAGAAAGCGGAGGAGCTT......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCTACGAAGCCCAGCATCGAAAAGGTT.............................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................CGACCAGAAGGGCTATT............................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................TTTTAAAATGCGACCAGAAGGGCTATT............................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................TAGATCTACGAAGCCCAGCATCGAAAA.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAGGCGACCAGAAGGGCT.................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................TTTTGTGTTAGATCTACGAAGCCCAGCA......................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TACTGTAGGTGGTAATGTTTTTAAGA................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTTTAAGAAACCTCAGAAAGCGGA................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TAGACTAAGTAGGCAACAAATTGACT.............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TTTTGTTAGATCTACGAAGCCCAGC.......................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................TGCTATTTTGTGTTAGATCTACGAAGCC.............................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................TGTATTGTAGGTGGTAATGTTTT..................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGTAGGCAACAAATTGACTCTTTCCGC...................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................ATCTACGAAGCCCAGCATCGAAAAGGTT.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTGTATAGACTAAGTAGGCAACAAA.................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGTATAGACTAAGTAGGCAACAA..................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TCTTTCCGCTTTCGTTGCTTGTAT....................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................TGTATAGACTAAGTAGGCAACAAATT.................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................TATAGACTAAGTAGGCAACAAATTGACTC............................................................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ACCTCAGAAAGCGGAGG.............. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................TCATGCTATTTTGTGTTAGATCTACGAAGC............................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAACCTCAGAAAGCGGAGGAGCTT......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCAACGAAGTCCAGCATCGAAAAGGTT.............................................................................................................................................. 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................TATAGACTAAGTAGGCAACAAATTGAAA.............................................................................. 28 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................TCTACGAAGCCCAGCATCGAAA................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCTACGAAGCCCAGCATCGAAAA.................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCTCAGAAAGCGGAGGAGCTTTA....... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................TGCTATTTTGTGTTAGATCTACGAAGC............................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................ATCAACGAAGTCCAGCATCGAAAAGG................................................................................................................................................ 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TAGGCAACAAATTGACTCTTTCCGC...................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................TAGATCTACGAAGCCCAGCATC....................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAGACTAAGTAGGCAACAAATTGAAA.............................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................GCGACCAGAAGGGCTATT............................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCAGAAAGCGGAGGAGCT.......... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................TGTGTTAGATCTACGAAGCCCAGCA......................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................TGTTAGATCTACGAAGCCCAGCATCGAA.................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACCTCAGAAAGCGGAGGAGCTTT........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................TAAAATGCGACCAGAAGGGCTATTTA............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGACTCTTTCCGCTTTCGTCTCTTG.......................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................TTTAAAATGCGACCAGAAGGGCTATT............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCTCAGAAAGCGGAGGAGCTTTACAAA... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGACTCTTTCCGCTTTCGTTTCTTG.......................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................ACCTCAGAAAGCGGAGGAGCTTTACA..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTGTATAGACTAAGTAGGCAACAAAT................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTCATAAAATCCCCTAGCCAAAACT............................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................TAGATCTACGAAGCCCAGCATCGGAA................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TAGATCTACGAAGCCCAGC.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................TGTTTATGTTTTAAAATGCGACCAGA........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................TGTATAGACTAAGTAGG........................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................CAAAACTTGTATAGACT.................................................................................................. 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................CTAGCCAATACGTGTCTAGA.................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................GTATTGTAGGTGGGA............................................ 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
.....................................AAATGCGACCAGAAG...................................................................................................................................................................................................... 15 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAGGTTTCCGTACGT..................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................AAGTAGGCAACAAAT................................................................................... 15 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTGTATTGTAGGTGGGA............................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AATTTACATCATACATGTTTGTATACAAATACAAAATTTTACGCTGGTCTTCCCGATAAATAGTACGATAAAACACAATCTAGATGCTTCGGGTCGTAGCTTTTCCAAAGGCATGTAAAGTATTTTAGGGGATCGGTTTTGAACATATCTGATTCATCCGTTGTTTAACTGAGAAAGGCGAAAGCAACGAACATAACATCCACCATTACAAAAATTCTTTGGAGTCTTTCGCCTCCTCGAAATGTTCGCA
***********************************************************************************.((((.(((((((((............))))).)))).))))..............(((...((((((....)).)))).))).......***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body
.....................................................................................................TTTCCTAAGGCATGTACAGTTT............................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................TGGGGGATCGGTTTTG............................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................TGGGGGATCGGCTTTG............................................................................................................. 16 2 20 0.25 5 1 0 1 3 0 0
..............................................................................................................................GGGGGATCGGCTTTG............................................................................................................. 15 2 20 0.15 3 1 1 0 1 0 0
........................................................................................................CCTAAGGCATGTACAGT................................................................................................................................. 17 2 7 0.14 1 0 0 1 0 0 0
.............................................................................................................................................................................AAAGGCGGAATCAATGAACA......................................................... 20 3 8 0.13 1 0 1 0 0 0 0
........................................................................................................CCTAAGGCATGTACAGTTT............................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0
....................................................................................................................................................................GTACCTCAGAAAGGCGAAAG.................................................................. 20 3 13 0.08 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................TTCTCGAAATGTTGGCA 17 2 15 0.07 1 0 0 1 0 0 0
...............................GAAAATTTTACGCTAGTCA........................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1
....................................................................................TGCTTTGGGTCCTAGTTT.................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................CCTAAGGCATGTACAGTT................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 12:26 AM