ID:

dsi_30384

 Coordinate:

3r:10809548-10809606 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10809222_10809547_+]; exon [3r_10809036_10809547_+]; CDS [3r_10809607_10810445_+]; exon [3r_10809607_10810445_+]; intron [3r_10809548_10809606_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
ACCGAGGAGGTAATCACAGACGACTGGGTGCAGCACCAAGGTGCCGAGCGGTGAGTTTCGGCCTACTATTTGGATGTTTTCCTGATTGACTTTCTTTCCCGATTTGTAGAGTGGAGATTGCTGCCGAGCAGATAGCTGGGATTAGCAGCTCACAGGAGT
**************************************************............((((.(((.(((......................))).)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
............ATCACAGACGACTGGGTGCAG.............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................GCTGGGATTAGCAGCTC........ 17 0 1 1.00 1 0 1 0 0 0 0 0 0
................CAGACGACTGGGTGCAGCACCAAGGT..................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................GATTAGCAGCTCACAGGA.. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.............TCACAGACGACTGGGTGCAGCACCAAT....................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0
..........TAATCACAGACGACTGGGTGCAGCACCAAGG...................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................GCAGTGAGTTTCGGCCGA.............................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0
.................................................................................................CCCGATTTGTATAGAGG............................................. 17 2 9 0.22 2 0 0 0 0 0 2 0 0
................................................................................................TCTCGATTAGTATAGTGG............................................. 18 3 20 0.15 3 0 0 0 0 0 3 0 0
..................................ACCAAGGTGACGATCGG............................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 0 0 1
..........................................................................................TTTCTTTCCAGATTTATA................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TGGCTCCTCCATTAGTGTCTGCTGACCCACGTCGTGGTTCCACGGCTCGCCACTCAAAGCCGGATGATAAACCTACAAAAGGACTAACTGAAAGAAAGGGCTAAACATCTCACCTCTAACGACGGCTCGTCTATCGACCCTAATCGTCGAGTGTCCTCA
**************************************************............((((.(((.(((......................))).)))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..................................................................................ACTAAGTGAAAGAGACGGCTA........................................................ 21 3 5 2.40 12 12 0 0 0
......CTCCATTAGTGTCTGCTGACC.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...................................................................................CTAAGTGAAAGAGACGGCTA........................................................ 20 3 13 0.08 1 1 0 0 0
..........................................................................................AAAGAAAGGGCCAAATAT................................................... 18 2 18 0.06 1 0 0 1 0
..................................................................................ACAAACTGAGAGAAAGG............................................................ 17 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:49 AM