dsi_30377

exon [x_18303515_18303909_-]; CDS [x_18303515_18303909_-]; intron [x_18303910_18304302_-]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGATTCGAATGCATGCAATATTTTTGCCAAATATTAGTTTGCGAATTAGTATTAGACCCAAAAAAAAAACTCATATATAAATAATTTGCTAGCTAGCTTTAATTATTTATTTTTTTTTTAACAAAATCTAAATTAAATAAAAATTAAATCAGAAAAACATAGCCCATTAATTGCTCATTTTTGTGTGACATGTAAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCGGTGAA ************************************************....................((((((((..(((((((.....((((.........(((((.(((((.(((((...........))))).))))).)))))..........)))).....)))))....))..))))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	M023 head
........................................................................................................................................................................................................GGACCCGACGGAAAGTT.................................	17	0	1	1.00	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................TTTGTGGGACATGTAAACAG..................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTCCCACAGGCCGCCATTGA.........	20	1	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................GTTCGGCATCCCGCAGGGCG................	20	2	1	1.00	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................................TTTGTGTGACATGTAAACAG..................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................ATTAGTATTAGAATCAGAAAAAA......................................................................................................................................................................................	23	3	3	0.33	1	0	1	0	0	0	0	0	0
.........................TGCCAACTATTACTTTGGGA.............................................................................................................................................................................................................	20	3	16	0.31	5	0	0	0	0	0	5	0	0
.................................................GTATTAGACCCGAAA..........................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	0	1	0	0	0
..........................................................................................TAGCTGGCTTTAATTGTATATT..........................................................................................................................................	22	3	6	0.17	1	0	0	0	0	0	0	1	0
.....................................................TAGAACGAAAACAAAAACTCAT...............................................................................................................................................................................	22	3	6	0.17	1	0	0	0	0	1	0	0	0
......................................................................................................................................TAAATAAAGATTGAATCGGAAA..............................................................................................	22	3	8	0.13	1	0	0	0	0	0	0	0	1
........................................TGAGAATTTGTATTAGACCT..............................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................CATTTAAAGAGGTACCCGA..........................................	19	3	17	0.06	1	0	0	0	0	0	1	0	0

ACCTAAGCTTACGTACGTTATAAAAACGGTTTATAATCAAACGCTTAATCATAATCTGGGTTTTTTTTTTGAGTATATATTTATTAAACGATCGATCGAAATTAATAAATAAAAAAAAAATTGTTTTAGATTTAATTTATTTTTAATTTAGTCTTTTTGTATCGGGTAATTAACGAGTAAAAACACACTGTACATTTGTCCCTGGGCTGCCTTTCAAGCCGTAGGGTGTCCGGCGGTAACTGAGCCACTT ************************************************....................((((((((..(((((((.....((((.........(((((.(((((.(((((...........))))).))))).)))))..........)))).....)))))....))..))))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
............................................................................................................ATATAAAAAAAGTTGTTTTAGATTT.....................................................................................................................	25	2	1	1.00	1	1	0	0
..............................................................................................................ATAAAAAAAGTTGTTTTAGATTT.....................................................................................................................	23	2	1	1.00	1	1	0	0
................................................................................................................AAAAAAAGTTGTTTTAGATTTGG...................................................................................................................	23	3	5	0.20	1	1	0	0
..........................................................................................................................................................................................................................................GGTAACTGAGCCCCT.	15	1	6	0.17	1	1	0	0
....................................................................................................................................TAATTTATTTTTGATCTAGTGT................................................................................................	22	3	10	0.10	1	0	1	0
..............................................................................................................AAAAAAAAGATTGCTGTAGAT.......................................................................................................................	21	3	11	0.09	1	0	1	0
...............................................................................................................AAAAAAAAACTGTTTTAG.........................................................................................................................	18	1	11	0.09	1	1	0	0
...........................................................................................................................................................................................................GGGATGCCTTTGAAGGCGT............................	19	3	17	0.06	1	0	0	1
..........................................................................................................................................................................................................................CCCTTGGGTGTCCGGC................	16	2	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:18303860-18304109 -	dsi_30377	TGGA----TTCGAATGCATGCAA---TATTTTT-------------GCCAAATATTAGTTTGCGAATTAGTATTAGACCCAAA--AAAAAAAC-------------------------------------------------------------------------------------------------------------------------TCATATAT-------------------------------------------------------------------A----A---------ATAATTTGCTAGCTAGCTTTAATTATTTATTTTTTTTTTA-A----CA-----------------------------AAATCTAA------------------------ATT-AAATAAAAAT----------T------------AAATCAGAA--AAACATAG----------------------------------------------------------------------------CCCATT---------AAT----TG--------------CTCATTTTTGTGTGACATGT------AAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCGGTGAA
droSec2	scaffold_8:1696576-1696819 -		TGGA----TTCCAATGCATGCAA---TATTTTC-------------GCGAAATATTAGTTTGCGAATTATTACTAGACCCCGTCTGAA------------------------------------------------------------------------------------------------------------------------------TCGTATAT-------------------------------------------------------------------AA---A---------ACGATTTGCTAGCTAGCTTTGATTATTTATTTTTT----A-A----CA-----------------------------AAATCGAA------------------------ATT-AAATAAAAAT----------T------------AAATCAGAA--AAACATAG----------------------------------------------------------------------------CCCATT---------AAT----TG--------------CTTATTTTTGTGTAACATGT------AAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCCGTGAA
dm3	chrX:19414282-19414497 -		TGGA----TACGAATCCATGCAA---TATTTTC-------------GCCAAATATTAATTTGC---TCTGTTAAAAGCCA--------------------------------------------------------------------------------------AAAAAAAAAT-------------GCATACATATGTCGGAGAAGACGACACATATAT-------------------------------------------------------------------AA---A---------ACAATTTGCGAGCTAGCTTTATTTATTTACTTCTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CATTTGTGCGTGACATGT------TAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCGGTGAA
droEre2	scaffold_4690:9651313-9651656 -		TTGA----TTCGAATGCATACAT---CATTTTCAAAAAAGTTGTTAGCCAAATATTGGTTTGC---TCTGTTAAAGGCCCCAC--AAA------------------------------------------------------------------------------------------------------------------------------TAACATAT-------------------------------------------------------------------A--------AACATGACAATTTGCGAGCGTGCTCTATTTATTTTTATTTTATTTAAACAAACAAAAACATTTAAATTTTGCACCAATGAAAAAAATTGAA------------------------ATTCAAATAAATACAAAAGAAAGTCAAAACAATA-------------------------------A-AGTTGCAC--------------------------------TTATGCACTCGTCTGCCCAGCATTACCGATT---------AATTAATTGTACCTCTCCTGCT---CA--TTTGTGTGACATGT------AAACAGGGTCCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCCGTGAA
droYak3	2R:20296249-20296256 +		TCGC----TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG
droEug1	scf7180000409109:36367-36666 +		TAGC----ATTGATTATGAACTATAAGATTTTAATCAAAGTTGA------------------------------------AAA--TAATTTCCAGTCATCAGATCCTCTTATGTTATTTATTTATTTAAACTTCAAGTATTTTTGTGAGTTTGTTGATAAAAAACAAATGAAAAATCGAGGTTCTAATTGCTTA-------CGTAGAAGATAAGACAGG------------------------------------------------------------------------TAACACAA--------------------------------------------------------------------------------------------------------------------------------------------------AAGGG-------AA------------------AT-AGTTCTACTTCTATA--------------------------------------------ATATTTCGTATT---------AAT----AGCATT----TTTTG---CA--TTTGCATGGCATAC------AAATAGGGCCCCGATGGAAAATTTGGCATCCCACAGGCTGCCATTGACTCGGTGAA
droBia1	scf7180000302069:1186996-1187203 +		TCGC----TTGGTTTTCATCCAACTAGATTT------------------------------GT---CTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATATGTGGC-------------------------------------------------------------------A----------------------------------CAA------------------------ATC-GAATAGGTAT----------T------------CTATTAGAATAAGACCTAGCCTCACA---------------------------------------------------------------GCTTT--CGATTCCAATTGTAAATGTATCATACTTTTCTTTTG---CA--CTTGTCTGACTTAC----AAAAACAGGGCCCCGACGGAAAGTTCGGCATCCCACAGGCGGCCATCGACTCGGTGAA
droTak1	scf7180000415169:883330-883381 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCCCGACGGAAAGTTCGGCATCCCACAGGCGGCCATCGACTCGGTGAA
droEle1	scf7180000490751:1070847-1070948 -		CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT---------AAT----TGTACCTATCTTTCC---CA--TTTGTGTGGTACGAAATCAAAATCAGGGAGCCGATGGAAAGTTCGGCATCCCGCAGGCCGCCATCGACTCGGTGAA
droRho1	scf7180000761121:234413-234488 +		CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----CATTCGTTTTGTACGA------AAACAGGGTCCCGACGGAAAGTTTGGCATCCCCCAGGCCGCCATCGACTCGGTGAA
droFic1	scf7180000454073:1690112-1690396 -		TTAT----TTTCAA------------------------------------------------------------------ATA--TGTTTGCTAGTTAGTGTAGCTT----------------------------------------------------------------------------------------------------------------------TTATAATTGTTTTTATATACATATATTATCAATATTTA--TTATAAA-GGAGTTTCAACCAAAA--TGTTTTAATATTGACATTTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAATTATTTTGAAAAAAATAAAATATATTTTACGAAAAATTCTTGTGCAGTCATATTA-TAGAAATCTCCATT---------AAT----TGCTCTTTACGTTCC---CCTTTTTGTGTGTCATGA------AAACAGGGAGCCGATGGCAAGTTCGGAATCCCACAGGCGGCCATTGACTCGGTGAA
droKik1	scf7180000302517:1143054-1143278 -		TATT----ATATAA------------------------------------------------------------------AAA--ATAATATT-------------------------------------------------------------------------------------------------------------------------TATTATATAAATAATAATATTTATTTTATAAA-----TAATAATATTTATTTTATAAA-TAATATTTAATTTAAA--TAATACAA--------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------------ATTTCACAAATAATTTTTATTTTATAA----------------------------------------------------------------------ATAATATTTATTTTAAACATAATTTTTATTCACCAAAA------AAACAGGGCGCCGATGGAAAGTTTGGCATTCCACAGGCCGCCATCGATTCGGTAAA
droAna3	scaffold_13417:2519569-2519627 +		TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------GAACAGGGTCCCGATGGCAAGTTTGGAATCCCACAGGCCGCCATCGACTCGGTTAA
droBip1	scf7180000396003:18488-18648 +		ATAAGTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTTTA-G----CA----------------------------------CACATGGGTAAATTTAACGGAGATAAAACA-TGATTAAA-------------------------------GTATAAGCCCTATA-------------------------------------------------------CTCTAA--------------CTAATA---------AAC----TC--------------CGAATCTTTGTTT------T------GAATAGGGTCCCGATGGCAAGTTCGGCATTCCACAAGCCGCCATTGACTCCGTCAA
dp5	XL_group1a:5402840-5402894 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGACCAGATGGAAAATTCGGCATTCCACAAGCTGCCATCGATTCGGTGAA
droPer2	scaffold_14:2051039-2051111 +		ATTC----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TATTGATTT------T------GAACAGGGACCAGATGGAAAATTCGGCATTCCACAAGCTGCCATCGATTCGGTGAA
droWil2	scf2_1100000004909:1822306-1822379 +		TCAT----TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------TTTCTTT-----T------T------CTATAGGGACCCGATGGAAAATTCGGCATTCCCCAAGCGGCCATCGATTCGGTCAA
droVir3	scaffold_13049:24085909-24085973 -		GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCT------GTGCGAAGACCCGATGGAAAGTTCGGTATACCCCAGGCTGCCATCGATTCGGTCAA
droMoj3	scaffold_6328:2953454-2953506 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGTCCCGATGGCAAATTCGGCATACCCCAGGCCGCCATCGATTCGGTCAA
droGri2	scaffold_15081:2091229-2091286 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------ACACAGGGACCCGATGGCAGATTCGGCATTCCCCAGGCTGCCATCGATTCGGTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGGA----TTCGAATGCATGCAA---TATTTTT-------------GCCAAATATTAGTTTGCGAATTAGTATTAGACCCAAA--AAAAAAAC-------------------------------------------------------------------------------------------------------------------------TCATATAT-------------------------------------------------------------------A----A---------ATAATTTGCTAGCTAGCTTTAATTATTTATTTTTTTTTTA-A----CA-----------------------------AAATCTAA------------------------ATT-AAATAAAAAT----------T------------AAATCAGAA--AAACATAG----------------------------------------------------------------------------CCCATT---------AAT----TG--------------CTCATTTTTGTGTGACATGT------AAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCGGTGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCGACGGAAAGTT.................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTGACATGT------AAACAG..................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGGA----TTCCAATGCATGCAA---TATTTTC-------------GCGAAATATTAGTTTGCGAATTATTACTAGACCCCGTCTGAA------------------------------------------------------------------------------------------------------------------------------TCGTATAT-------------------------------------------------------------------AA---A---------ACGATTTGCTAGCTAGCTTTGATTATTTATTTTTT----A-A----CA-----------------------------AAATCGAA------------------------ATT-AAATAAAAAT----------T------------AAATCAGAA--AAACATAG----------------------------------------------------------------------------CCCATT---------AAT----TG--------------CTTATTTTTGTGTAACATGT------AAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCCGTGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCGACGGAAAGTTCGGC.............................	21	1	4.00	4	0	0	4	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCGGCATCCCACAGGC..................	21	1	2.00	2	0	0	1	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCGACGGAAAGTTCGGCA............................	22	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACCCGACGGAAAGTTCGGC.............................	22	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACAGGCCGCCATTGACTCCGT...	26	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGGCCGCCATTGACTCCGT...	23	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGACGGAAAGTTCGGC.............................	20	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCGCCATTGACTCCGTGA.	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCGACGGAAAGTTCGGCATC..........................	24	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAGTTCGGCATCCCAC......................	20	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGAAAGTTCGGCATCCCACA.....................	24	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGGCATCCCACAGG...................	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGCATCCCACAGGC..................	18	1	1.00	1	0	0	1	0

dm3

TGGA----TACGAATCCATGCAA---TATTTTC-------------GCCAAATATTAATTTGC---TCTGTTAAAAGCCA--------------------------------------------------------------------------------------AAAAAAAAAT-------------GCATACATATGTCGGAGAAGACGACACATATAT-------------------------------------------------------------------AA---A---------ACAATTTGCGAGCTAGCTTTATTTATTTACTTCTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CATTTGTGCGTGACATGT------TAACAGGGACCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCGGTGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCATTGACTCGGTGAA	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACCCGACGGAAAGTTCGGCATC..........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGACGGAAAGTTCGGCAT...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCGGCATCCCACA.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAAAGTTCGGCATCC.........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCCCACAGGCCGCCA.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TGTTAAAAGCCA--------------------------------------------------------------------------------------AAAAAACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTGA----TTCGAATGCATACAT---CATTTTCAAAAAAGTTGTTAGCCAAATATTGGTTTGC---TCTGTTAAAGGCCCCAC--AAA------------------------------------------------------------------------------------------------------------------------------TAACATAT-------------------------------------------------------------------A--------AACATGACAATTTGCGAGCGTGCTCTATTTATTTTTATTTTATTTAAACAAACAAAAACATTTAAATTTTGCACCAATGAAAAAAATTGAA------------------------ATTCAAATAAATACAAAAGAAAGTCAAAACAATA-------------------------------A-AGTTGCAC--------------------------------TTATGCACTCGTCTGCCCAGCATTACCGATT---------AATTAATTGTACCTCTCCTGCT---CA--TTTGTGTGACATGT------AAACAGGGTCCCGACGGAAAGTTCGGCATCCCACAGGCCGCCATTGACTCCGTGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGCCATTGACTCCGT...	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGAAAGTTCGGCATCC.........................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTCGGCATCCCACAGGCCGCC..............	26	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACAGGCCGCCATTGACTCCGTG..	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCGACGGAAAGTTCGGCATC..........................	23	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCGACGGAAAGTTCGGC.............................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

TCGC----TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TAGC----ATTGATTATGAACTATAAGATTTTAATCAAAGTTGA------------------------------------AAA--TAATTTCCAGTCATCAGATCCTCTTATGTTATTTATTTATTTAAACTTCAAGTATTTTTGTGAGTTTGTTGATAAAAAACAAATGAAAAATCGAGGTTCTAATTGCTTA-------CGTAGAAGATAAGACAGG------------------------------------------------------------------------TAACACAA--------------------------------------------------------------------------------------------------------------------------------------------------AAGGG-------AA------------------AT-AGTTCTACTTCTATA--------------------------------------------ATATTTCGTATT---------AAT----AGCATT----TTTTG---CA--TTTGCATGGCATAC------AAATAGGGCCCCGATGGAAAATTTGGCATCCCACAGGCTGCCATTGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGC----TTGGTTTTCATCCAACTAGATTT------------------------------GT---CTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATATGTGGC-------------------------------------------------------------------A----------------------------------CAA------------------------ATC-GAATAGGTAT----------T------------CTATTAGAATAAGACCTAGCCTCACA---------------------------------------------------------------GCTTT--CGATTCCAATTGTAAATGTATCATACTTTTCTTTTG---CA--CTTGTCTGACTTAC----AAAAACAGGGCCCCGACGGAAAGTTCGGCATCCCACAGGCGGCCATCGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCCCGACGGAAAGTTCGGCATCCCACAGGCGGCCATCGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT---------AAT----TGTACCTATCTTTCC---CA--TTTGTGTGGTACGAAATCAAAATCAGGGAGCCGATGGAAAGTTCGGCATCCCGCAGGCCGCCATCGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-----CATTCGTTTTGTACGA------AAACAGGGTCCCGACGGAAAGTTTGGCATCCCCCAGGCCGCCATCGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTAT----TTTCAA------------------------------------------------------------------ATA--TGTTTGCTAGTTAGTGTAGCTT----------------------------------------------------------------------------------------------------------------------TTATAATTGTTTTTATATACATATATTATCAATATTTA--TTATAAA-GGAGTTTCAACCAAAA--TGTTTTAATATTGACATTTTGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAATTATTTTGAAAAAAATAAAATATATTTTACGAAAAATTCTTGTGCAGTCATATTA-TAGAAATCTCCATT---------AAT----TGCTCTTTACGTTCC---CCTTTTTGTGTGTCATGA------AAACAGGGAGCCGATGGCAAGTTCGGAATCCCACAGGCGGCCATTGACTCGGTGAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATT----ATATAA------------------------------------------------------------------AAA--ATAATATT-------------------------------------------------------------------------------------------------------------------------TATTATATAAATAATAATATTTATTTTATAAA-----TAATAATATTTATTTTATAAA-TAATATTTAATTTAAA--TAATACAA--------------------------------------------------------------------------------------------------------------------------------------------------ATATTT-----------------ATTTCACAAATAATTTTTATTTTATAA----------------------------------------------------------------------ATAATATTTATTTTAAACATAATTTTTATTCACCAAAA------AAACAGGGCGCCGATGGAAAGTTTGGCATTCCACAGGCCGCCATCGATTCGGTAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------GAACAGGGTCCCGATGGCAAGTTTGGAATCCCACAGGCCGCCATCGACTCGGTTAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAATCCCACAGGCCGCC..............	22	1	6.00	6	0	0	0	0	0	6
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTTTGGAA............................	23	1	5.00	5	0	0	0	0	0	5
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTT.................................	18	1	5.00	5	0	0	0	0	0	5
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTTTGG..............................	21	1	3.00	3	1	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTTTGGAATCCCACA.....................	20	1	3.00	3	0	0	1	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTTTG...............................	20	1	3.00	3	0	0	0	0	0	3
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGGAATCCCACAGGCCGCCATC...........	26	1	3.00	3	1	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATCCCACAGGCCGCC..............	19	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCGATGGCAAGTTTGGA.............................	21	1	2.00	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCCACAGGCCGCCATCGACT.......	27	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTTTGGAAT...........................	24	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCCACAGGCCGCC..............	20	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCCACAGGCCGCCATCGA.........	25	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCCCGATGGCAAGTTTGGA.............................	22	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAGTTTGGAATCCCACAGGCC.................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCCGCCATCGACTCGGT...	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATCCCACAGGCCGCCATC...........	23	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCCACAGGCCGCCATCGACT.......	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATCCCACAGGCCGCCA.............	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACAGGCCGCCATCGACT.......	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCGCCATCGACTCGGTT..	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGCCATCGACTCGG....	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACAGGCCGCCATCGACTC......	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTGGAATCCCACAGGC..................	22	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCCGCCATCGACTCGGTT..	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAATCCCACAGGCCGCC..............	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACAGGCCGCCATCGACTCGGT...	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTGGAATCCCACAGGC..................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGCCATCGACTCGGT...	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTGGAATCCCACAG....................	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCCGCCATCGACTC......	19	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGTTTGGAATCCCACAGGC..................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCCACAGGCCGCCATCGACT.......	25	1	1.00	1	1	0	0	0	0	0

droBip1

ATAAGTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTTTA-G----CA----------------------------------CACATGGGTAAATTTAACGGAGATAAAACA-TGATTAAA-------------------------------GTATAAGCCCTATA-------------------------------------------------------CTCTAA--------------CTAATA---------AAC----TC--------------CGAATCTTTGTTT------T------GAATAGGGTCCCGATGGCAAGTTCGGCATTCCACAAGCCGCCATTGACTCCGTCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGACCAGATGGAAAATTCGGCATTCCACAAGCTGCCATCGATTCGGTGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAAGCTGCCATCGATTCGGT...	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAGCTGCCATCGATTCGGT...	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCAGATGGAAAATTCGGCATTC.........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAAAATTCGGCATTCCACAAGC..................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGGCATTCCACAAGCTGC...............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAATTCGGCATTCCA.......................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGCTGCCATCGATTCGGT...	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGGCATTCCACAAGCT.................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATTCGGCATTCCACA.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAAGCTGCCATCGATTCGGTG..	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAAATTCGGCATTC.........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCATTCCACAAGCTGCCATCG..........	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCCATCGATTCGGTGA.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATTC----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------TATTGATTT------T------GAACAGGGACCAGATGGAAAATTCGGCATTCCACAAGCTGCCATCGATTCGGTGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAAATTCGGCATTCCACA.....................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGCATTCCACAAGCT.................	19	1	1.00	1	0	1	0	0	0	0

droWil2

TCAT----TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------TTTCTTT-----T------T------CTATAGGGACCCGATGGAAAATTCGGCATTCCCCAAGCGGCCATCGATTCGGTCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCAAGCGGCCATCGATTCG.....	23	1	2.00	2	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCCAAGCGGCCATCGATTC......	23	1	2.00	2	0	1	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCATTCCCCAAGCGGC...............	18	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCAAGCGGCCATCG..........	18	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTCGGCATTCCCCAAGCG.................	23	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATGGAAAATTCGGCATTCCC.......................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCCCCAAGCGGCCATC...........	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCATCGATTCGGTCAA	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCATCGATTCGGTC..	18	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAAGCGGCCATCGATTCGGTC..	24	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTCGGCATTCCCCAAGCGGC...............	25	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCATTCCCCAAGCGGCCA.............	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCATCGATTCGGTC..	19	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGGCCATCGATTCGGTC..	21	1	1.00	1	0	1	0	0	0

droVir3

GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCT------GTGCGAAGACCCGATGGAAAGTTCGGTATACCCCAGGCTGCCATCGATTCGGTCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGATGGAAAGTTCGGTA............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGGTCCCGATGGCAAATTCGGCATACCCCAGGCCGCCATCGATTCGGTCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCCAGGCCGCCATCGATTCGGTC..	27	1	1.00	1	1	0	0	0	0	0

droGri2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC------ACACAGGGACCCGATGGCAGATTCGGCATTCCCCAGGCTGCCATCGATTCGGTCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-13.2	-13.2	-12.6	-12.6

dsi_30377

x:18303910-18304059 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads