ID:

dsi_30366

 Coordinate:

3r:10808334-10808483 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.3 -14.3 -14.3 -14.3

Flybase annnotation

five_prime_UTR [3r_10808256_10808333_+]; exon [3r_10808256_10808333_+]; intron [3r_10808334_10809035_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAAAAACGTTGAAAACGAAGCATGCGAACGGCATAAACACTGGATTTAAGGTAAAACAACGCAACAACAGCACTCAGTGGACGGTAGACCTATTTAACCTCAAAATGACACCGACAAACTCGGCTGAAAATTAAAAATAAAATATTCCAAAGTTTCGGCTGTGCAAGAATCTTGGGCGTGTGATGTGTGATGTAATCGCGTGGCCGCAAAGGCTATTGCCGTCTGTCGCTTCTTTTTGATATTAATATAT
*******************************************************************((........((.(((((.(((.(((((.............((((((.....)))).)).............))))).......)))...))))).)).......))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 M053
female body
 SRR1275487
Male larvae		 SRR902008
ovaries
.....................ATGCGAACGGCATAAACACTG................................................................................................................................................................................................................ 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGGCTGTGCGAGAGTCTTGGG.......................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CAGCACTCAGTGGACGGTAGA.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................CAACGGCACTCGGTGGACGGTT.................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....AACGTTGAAAACGAAGCATGCGAACGGC.......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................CGCAACAACAGCACTCAGTGGACGGT..................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGGCTGTGCAAGAATCTTG............................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGATGTGTGATGTAATCGCGT................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................AAGGCTATTGCCGTCTGTCGC..................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................GTGCAAGAATTTTGGGCGTGT..................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAGAATCTTGGGCGTGTGATG................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................AACAGCACTCAGTGGACGGTA.................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................AACAACAGCACTCAGTGGACG....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................ACAGCACTCAGTGGACGGTAGACCTAT............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CAAAATGACACCGACAAACTCG................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................GCACTCAGTGGACGGTAGACC................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGGCTGTGCAAGAGTCTTGGG.......................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGCACTCAGTGGACGGTAGACC................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................GAACGGCATAAACACTGGATT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................ACAACAGCACTAAGTGGGTGGTA.................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TCCAAAGTTTCGGCTGTGCAA.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................AAAGATTCCAAAGTCTCGGCT.......................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................TTCCAAAGTTTCGGCTGTGCA..................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................TGCAAGAATTTTGGGCGTGTG.................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TATTCCAAAGTTTCGGCTG......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AACCTCAAAATGACACCGA........................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................CATAAACACTGGATTTAAGGT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................CAACAGCAGCACTCGGTGGAC........................................................................................................................................................................ 21 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TCGGCTGTGCAAGAATCTTGG........................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................TATTCCAAGGTTTCGGCTGTGC...................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTGTGATGTGTGATGTAATCGCG.................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................AGCACTCAGTGGACGGTAGAC................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................GTGATGTAATCGCGTGGCCG............................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................CTCGGCTGAAAATTAAAAAT................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AATATTCCAAAGTTTTGGCTG......................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................ATTCCAAAGTCTCGGCTGTGC...................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................AACCTCAAAATGACACCGACA...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................GACAAACTCGGCTGAAAATT...................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GCCGCAAAGGCTATTGCCGTCTGTC....................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGTCTGTCGCTTTTTTTTTATA......... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CAACACGGCTGCAAATTAAAAA................................................................................................................. 22 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 2
...................................................................................................................................................................................................................GCCATTGCCGCCTGTCGCT.................... 19 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........AAGACGAACCGTGCGAACG............................................................................................................................................................................................................................ 19 3 20 0.15 3 0 0 0 0 2 0 0 0 1 0 0 0 0
............................................................................................................................................................................................GGTGTAATCGCGTGGCCTA........................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................GTTCCAAGGTTTCGGCTG......................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGTGTAATCGCGTGG............................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATTTTTGCAACTTTTGCTTCGTACGCTTGCCGTATTTGTGACCTAAATTCCATTTTGTTGCGTTGTTGTCGTGAGTCACCTGCCATCTGGATAAATTGGAGTTTTACTGTGGCTGTTTGAGCCGACTTTTAATTTTTATTTTATAAGGTTTCAAAGCCGACACGTTCTTAGAACCCGCACACTACACACTACATTAGCGCACCGGCGTTTCCGATAACGGCAGACAGCGAAGAAAAACTATAATTATATA
****************************************************************************((........((.(((((.(((.(((((.............((((((.....)))).)).............))))).......)))...))))).)).......))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.................................................................................................GGAGTTTTACTGTGGCTGTTT.................................................................................................................................... 21 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0 0 0
...................................................................GTCGTGAGTCACCTGCCATC................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CGCACACTACACACTACATT....................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................CTACACACTACATTAGCGCACC............................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................GGAGTTTTGCTGTGGCTGTT..................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGTTGTCGTGAGTCACCTGCCGTC................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................ACATTTTGTTGCGTTGTTGTCC................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................AGAGCCGACACGTTCTTAAAA............................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTGCGTTGTTGTCGTG................................................................................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGTCACCTGCCATCTGGAT.............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTCGTGAGTCACCTGCCATCTG................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TACGGCAGACAGCGAAGAAAAA............. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................ACATTAGCGCACCGGCGTTT........................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................GTCGTGAGTCACCTGCCATCT.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTTATTTTATAAGGTTT................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................GTGAGTCACCTGCCATCTGGA............................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGCGTTTCCGATAACGGCAGA.......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................GGTTGTCGTGAGTCACCTGCCGTC................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CTTAGAACCCGCACACTACAC............................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................CTACATTAGCGCACT............................................... 15 1 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACGGAAGACAGCGAAAAAAAA............. 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAGGATTCAAAGTCGAAACGT..................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................TTTTGCGGCGTTGCTGTCGT.................................................................................................................................................................................. 20 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 4
...................................................................................................................................................................................................................................CGAAGAAAAACTATAAG...... 17 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CACCACATTAGCGCACT............................................... 17 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAGGTTTCGAAGCCGTC......................................................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......GCAAGTTTTGCTTCG..................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAAAGTCGAAACGTTGTTA................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TCAAAGCCGAAACGT..................................................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................GAGTCACCTGCCATAA.................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................TTGTTGTCGTGAGGC............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCACCACATTAGCGCACT............................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:49 AM